Wall clock time and date at job start Wed Apr 1 2020 02:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29320 * 126.06944 * 2 1 4 4 N 1.26090 * 117.97101 * 179.76114 * 3 2 1 5 5 C 1.30245 * 117.62210 * 0.54262 * 4 3 2 6 6 N 1.38704 * 126.16942 * 179.67668 * 5 4 3 7 7 C 1.46953 * 110.99625 * 123.84566 * 6 5 4 8 8 C 1.53052 * 109.36054 * 176.81326 * 7 6 5 9 9 N 1.46959 * 109.36710 * 58.40408 * 8 7 6 10 10 C 1.46895 * 110.99996 * 176.81153 * 9 8 7 11 11 C 1.50702 * 109.47326 * 313.79425 * 10 9 8 12 12 C 1.38633 * 119.75122 * 269.73472 * 11 10 9 13 13 C 1.37617 * 120.24733 * 179.72537 * 12 11 10 14 14 C 1.40719 * 119.74359 * 0.51750 * 13 12 11 15 15 C 1.41394 * 120.24161 * 179.73273 * 14 13 12 16 16 H 1.08007 * 119.99956 * 204.40889 * 15 14 13 17 17 C 1.39947 * 120.00253 * 24.40804 * 15 14 13 18 18 N 1.30825 * 120.00071 * 17.84522 * 17 15 14 19 19 Si 1.86797 * 119.99824 * 197.84721 * 17 15 14 20 20 H 1.48501 * 109.47381 * 60.00190 * 19 17 15 21 21 H 1.48498 * 109.47210 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47557 * 299.99838 * 19 17 15 23 23 C 1.40716 * 119.51350 * 359.75015 * 14 13 12 24 24 C 1.37618 * 119.74077 * 0.02562 * 23 14 13 25 25 C 1.46953 * 110.87557 * 300.67760 * 9 8 7 26 26 C 1.46958 * 110.99597 * 0.05013 * 6 5 4 27 27 S 1.76483 * 126.06543 * 180.30212 * 2 1 3 28 28 H 1.08997 * 109.47638 * 269.69697 * 1 2 3 29 29 H 1.09006 * 109.47154 * 29.69340 * 1 2 3 30 30 H 1.08998 * 109.47440 * 149.69073 * 1 2 3 31 31 H 1.09001 * 109.49036 * 296.77469 * 7 6 5 32 32 H 1.09000 * 109.49051 * 56.85009 * 7 6 5 33 33 H 1.08995 * 109.48998 * 298.43211 * 8 7 6 34 34 H 1.09007 * 109.48685 * 178.36665 * 8 7 6 35 35 H 1.08999 * 109.47671 * 73.79890 * 10 9 8 36 36 H 1.09001 * 109.46924 * 193.80056 * 10 9 8 37 37 H 1.07999 * 119.87320 * 359.96808 * 12 11 10 38 38 H 1.07999 * 120.12656 * 180.27426 * 13 12 11 39 39 H 0.96999 * 119.99887 * 180.02562 * 18 17 15 40 40 H 1.07994 * 120.12617 * 179.97438 * 23 14 13 41 41 H 1.08004 * 119.87455 * 179.97438 * 24 23 14 42 42 H 1.08997 * 109.49420 * 299.35122 * 25 9 8 43 43 H 1.09004 * 109.50368 * 179.29899 * 25 9 8 44 44 H 1.09007 * 109.49197 * 303.14644 * 26 6 5 45 45 H 1.08990 * 109.49267 * 63.19881 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2684 1.0453 0.0000 4 7 3.5167 0.8677 0.0046 5 6 3.9520 -0.3599 -0.0018 6 7 5.2809 -0.7571 -0.0046 7 6 5.5672 -1.6458 1.1302 8 6 7.0187 -2.1240 1.0466 9 7 7.9163 -0.9603 1.0531 10 6 9.3237 -1.3811 1.0501 11 6 9.5237 -2.4731 2.0692 12 6 9.8696 -2.1444 3.3709 13 6 10.0493 -3.1330 4.3112 14 6 9.8913 -4.4824 3.9444 15 6 10.0789 -5.5069 4.9006 16 1 10.3486 -6.5023 4.5796 17 6 9.9151 -5.2313 6.2628 18 7 9.2643 -4.1609 6.6400 19 14 10.6259 -6.3917 7.5425 20 1 12.0981 -6.4787 7.3686 21 1 10.3181 -5.8784 8.9015 22 1 10.0271 -7.7403 7.3749 23 6 9.5455 -4.8045 2.6189 24 6 9.3663 -3.7991 1.6965 25 6 7.6299 -0.0717 -0.0817 26 6 6.1784 0.4066 0.0019 27 16 2.5459 -1.4266 -0.0075 28 1 -0.3634 -0.0054 1.0276 29 1 -0.3634 0.8928 -0.5091 30 1 -0.3634 -0.8872 -0.5186 31 1 5.4162 -1.1037 2.0637 32 1 4.8985 -2.5059 1.0963 33 1 7.1629 -2.6893 0.1259 34 1 7.2419 -2.7601 1.9031 35 1 9.5894 -1.7541 0.0610 36 1 9.9578 -0.5304 1.3000 37 1 9.9947 -1.1083 3.6489 38 1 10.3144 -2.8745 5.3257 39 1 9.1512 -3.9697 7.5842 40 1 9.4222 -5.8368 2.3266 41 1 9.1014 -4.0439 0.6785 42 1 7.7810 -0.6137 -1.0153 43 1 8.2987 0.7884 -0.0483 44 1 5.9553 1.0428 -0.8547 45 1 6.0340 0.9721 0.9223 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363313621.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:08:40 Heat of formation + Delta-G solvation = 82.287466 kcal Electronic energy + Delta-G solvation = -26828.146434 eV Core-core repulsion = 23164.817823 eV Total energy + Delta-G solvation = -3663.328611 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 344.137 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.22147 -40.70818 -39.36616 -37.07255 -35.41616 -33.58602 -32.44036 -32.02368 -31.09471 -30.03884 -28.54452 -27.10051 -25.51715 -24.88975 -24.24287 -22.85442 -21.82241 -21.24288 -20.48509 -19.99324 -19.19208 -18.13506 -17.18851 -17.05457 -16.43241 -16.30180 -16.09281 -15.92876 -15.72129 -15.53550 -15.15398 -14.91498 -14.81776 -14.29714 -14.18877 -13.85308 -13.76489 -13.56647 -13.45088 -13.17703 -13.08501 -12.78472 -12.71108 -12.48650 -12.35816 -12.26570 -12.15417 -11.93628 -11.61885 -11.49223 -11.35512 -11.20565 -11.07006 -10.97515 -10.59925 -9.60918 -9.38406 -9.30859 -9.06341 -8.62507 -6.31489 -0.62851 -0.35252 0.22459 0.96062 1.17565 1.37843 1.44889 1.48385 1.52750 2.20536 2.26500 2.66342 3.06355 3.23364 3.52107 3.73203 3.78594 3.87892 4.08432 4.09259 4.18380 4.25471 4.32760 4.41066 4.43360 4.58353 4.63094 4.65321 4.68203 4.74138 4.81931 4.85117 4.92153 4.99148 5.09229 5.10049 5.17533 5.31783 5.41458 5.45157 5.48786 5.73191 5.93781 6.04669 6.13044 6.20776 6.30560 6.41438 6.73493 6.96455 7.06477 7.54602 8.33545 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.015173 B = 0.002379 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.895743 B =11767.955667 C =12875.905375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.024 3.976 3 N -0.283 5.283 4 N -0.334 5.334 5 C 0.200 3.800 6 N -0.441 5.441 7 C 0.066 3.934 8 C 0.067 3.933 9 N -0.547 5.547 10 C 0.127 3.873 11 C -0.200 4.200 12 C -0.085 4.085 13 C -0.192 4.192 14 C 0.081 3.919 15 C -0.501 4.501 16 H 0.074 0.926 17 C 0.036 3.964 18 N -0.824 5.824 19 Si 0.978 3.022 20 H -0.262 1.262 21 H -0.269 1.269 22 H -0.259 1.259 23 C -0.241 4.241 24 C -0.078 4.078 25 C 0.059 3.941 26 C 0.074 3.926 27 S 0.095 5.905 28 H 0.107 0.893 29 H 0.103 0.897 30 H 0.108 0.892 31 H 0.049 0.951 32 H 0.098 0.902 33 H 0.047 0.953 34 H 0.080 0.920 35 H 0.043 0.957 36 H 0.080 0.920 37 H 0.101 0.899 38 H 0.096 0.904 39 H 0.287 0.713 40 H 0.094 0.906 41 H 0.112 0.888 42 H 0.049 0.951 43 H 0.105 0.895 44 H 0.098 0.902 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.355 5.959 -12.267 19.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.258 4.258 3 N -0.119 5.119 4 N -0.176 5.176 5 C -0.172 4.172 6 N -0.162 5.162 7 C -0.061 4.061 8 C -0.061 4.061 9 N -0.272 5.272 10 C 0.001 3.999 11 C -0.202 4.202 12 C -0.104 4.104 13 C -0.212 4.212 14 C 0.079 3.921 15 C -0.531 4.531 16 H 0.092 0.908 17 C -0.179 4.179 18 N -0.450 5.450 19 Si 0.799 3.201 20 H -0.186 1.186 21 H -0.193 1.193 22 H -0.183 1.183 23 C -0.260 4.260 24 C -0.097 4.097 25 C -0.069 4.069 26 C -0.054 4.054 27 S 0.335 5.665 28 H 0.125 0.875 29 H 0.122 0.878 30 H 0.127 0.873 31 H 0.068 0.932 32 H 0.116 0.884 33 H 0.065 0.935 34 H 0.098 0.902 35 H 0.061 0.939 36 H 0.098 0.902 37 H 0.119 0.881 38 H 0.114 0.886 39 H 0.097 0.903 40 H 0.113 0.887 41 H 0.130 0.870 42 H 0.068 0.932 43 H 0.123 0.877 44 H 0.116 0.884 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -13.338 6.384 -12.071 19.088 hybrid contribution 0.528 -0.618 0.749 1.105 sum -12.810 5.766 -11.322 18.043 Atomic orbital electron populations 1.20651 0.80619 1.06151 1.05810 1.30455 1.04362 0.88323 1.02704 1.70737 0.96922 1.28153 1.16049 1.71556 1.06624 1.17643 1.21793 1.28276 0.97172 0.91227 1.00486 1.59226 0.97165 1.18890 1.40932 1.22511 0.98432 0.95688 0.89454 1.22064 0.89532 0.92732 1.01776 1.62285 1.04343 1.17509 1.43097 1.20686 0.87750 0.95755 0.95698 1.19224 1.12812 0.93449 0.94665 1.20720 0.99012 0.97375 0.93253 1.21255 1.07868 0.93274 0.98801 1.17946 0.88382 0.93249 0.92560 1.19810 1.43939 0.97481 0.91842 0.90817 1.26720 0.92419 0.97308 1.01479 1.69879 1.29682 1.26300 1.19116 0.85309 0.79638 0.78765 0.76359 1.18604 1.19325 1.18343 1.21128 1.12113 0.97849 0.94953 1.20636 0.98997 0.92376 0.97673 1.22260 0.94693 0.97896 0.92058 1.22231 0.90718 0.89557 1.02920 1.85709 0.98402 1.10885 1.71466 0.87472 0.87846 0.87343 0.93249 0.88423 0.93506 0.90182 0.93909 0.90150 0.88098 0.88601 0.90268 0.88732 0.87015 0.93240 0.87728 0.88406 0.93089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.65 10.51 71.23 0.75 0.09 16 2 C 0.02 0.47 7.79 88.48 0.69 1.16 16 3 N -0.28 -7.59 11.55 -47.71 -0.55 -8.14 16 4 N -0.33 -9.75 10.65 -55.84 -0.59 -10.34 16 5 C 0.20 5.22 7.05 179.13 1.26 6.48 16 6 N -0.44 -11.28 4.78 -702.15 -3.36 -14.64 16 7 C 0.07 1.77 5.49 86.31 0.47 2.24 16 8 C 0.07 2.00 4.64 86.31 0.40 2.40 16 9 N -0.55 -15.87 4.85 -900.27 -4.37 -20.24 16 10 C 0.13 3.88 5.43 85.56 0.46 4.35 16 11 C -0.20 -7.84 4.16 -19.67 -0.08 -7.92 16 12 C -0.08 -3.80 9.67 22.22 0.21 -3.59 16 13 C -0.19 -10.02 8.70 22.73 0.20 -9.82 16 14 C 0.08 4.31 5.58 -21.29 -0.12 4.19 16 15 C -0.50 -26.93 9.05 23.46 0.21 -26.71 16 16 H 0.07 3.82 7.91 -2.91 -0.02 3.80 16 17 C 0.04 1.80 5.14 85.26 0.44 2.24 16 18 N -0.82 -43.24 10.95 21.83 0.24 -43.00 16 19 Si 0.98 38.22 29.59 68.60 2.03 40.25 16 20 H -0.26 -10.03 7.11 99.48 0.71 -9.33 16 21 H -0.27 -9.97 7.11 99.48 0.71 -9.26 16 22 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 23 C -0.24 -11.40 9.80 22.73 0.22 -11.18 16 24 C -0.08 -3.17 7.80 22.22 0.17 -2.99 16 25 C 0.06 1.36 5.58 86.31 0.48 1.84 16 26 C 0.07 1.81 4.98 86.31 0.43 2.24 16 27 S 0.09 1.89 22.85 -56.49 -1.29 0.60 16 28 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.10 0.81 8.14 -2.38 -0.02 0.79 16 30 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.10 2.34 7.57 -2.39 -0.02 2.32 16 33 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.08 2.90 5.85 -2.38 -0.01 2.88 16 35 H 0.04 1.19 8.02 -2.39 -0.02 1.17 16 36 H 0.08 2.31 8.08 -2.39 -0.02 2.29 16 37 H 0.10 4.18 8.06 -2.91 -0.02 4.15 16 38 H 0.10 5.31 6.16 -2.91 -0.02 5.29 16 39 H 0.29 13.70 8.30 -92.71 -0.77 12.93 16 40 H 0.09 4.27 8.06 -2.91 -0.02 4.25 16 41 H 0.11 3.86 8.06 -2.91 -0.02 3.84 16 42 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 44 H 0.10 2.25 8.01 -2.38 -0.02 2.23 16 45 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -63.09 377.10 -0.69 -63.78 By element: Atomic # 1 Polarization: 25.72 SS G_CDS: 1.00 Total: 26.72 kcal Atomic # 6 Polarization: -41.20 SS G_CDS: 6.21 Total: -34.99 kcal Atomic # 7 Polarization: -87.73 SS G_CDS: -8.63 Total: -96.36 kcal Atomic # 14 Polarization: 38.22 SS G_CDS: 2.03 Total: 40.25 kcal Atomic # 16 Polarization: 1.89 SS G_CDS: -1.29 Total: 0.60 kcal Total: -63.09 -0.69 -63.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363313621.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.063 kcal (2) G-P(sol) polarization free energy of solvation -63.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds