Wall clock time and date at job start Wed Apr 1 2020 02:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47252 * 2 1 4 4 C 1.53001 * 109.47152 * 240.00203 * 2 1 3 5 5 C 1.53008 * 109.46900 * 294.73186 * 4 2 1 6 6 H 1.08999 * 109.47179 * 54.18166 * 5 4 2 7 7 C 1.52999 * 109.47112 * 294.17987 * 5 4 2 8 8 N 1.46497 * 109.47341 * 184.99607 * 7 5 4 9 9 C 1.36928 * 120.00248 * 180.02562 * 8 7 5 10 10 H 1.08003 * 119.99814 * 0.02562 * 9 8 7 11 11 C 1.38817 * 120.00104 * 180.02562 * 9 8 7 12 12 N 1.31615 * 119.99753 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99956 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.46920 * 60.00275 * 13 11 9 15 15 H 1.48507 * 109.46997 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47259 * 300.00224 * 13 11 9 17 17 N 1.46504 * 109.47064 * 174.18387 * 5 4 2 18 18 C 1.34777 * 119.99959 * 272.44282 * 17 5 4 19 19 O 1.21609 * 119.99824 * 4.96221 * 18 17 5 20 20 C 1.47420 * 120.00127 * 184.95382 * 18 17 5 21 21 C 1.39980 * 120.15663 * 89.72464 * 20 18 17 22 22 F 1.35092 * 120.08671 * 0.02562 * 21 20 18 23 23 C 1.38104 * 119.82667 * 179.72405 * 21 20 18 24 24 C 1.38596 * 120.16635 * 0.55085 * 23 21 20 25 25 F 1.35101 * 119.83730 * 179.73962 * 24 23 21 26 26 C 1.38606 * 120.33144 * 359.72850 * 24 23 21 27 27 C 1.38092 * 120.16195 * 359.97438 * 26 24 23 28 28 F 1.35102 * 120.08401 * 180.02562 * 27 26 24 29 29 H 1.09004 * 109.47534 * 296.34162 * 1 2 3 30 30 H 1.09002 * 109.47434 * 56.33715 * 1 2 3 31 31 H 1.08994 * 109.47590 * 176.33794 * 1 2 3 32 32 H 1.09002 * 109.46869 * 120.00442 * 2 1 3 33 33 H 1.09003 * 109.46832 * 60.00270 * 3 2 1 34 34 H 1.09005 * 109.47175 * 180.02562 * 3 2 1 35 35 H 1.09002 * 109.47544 * 300.00028 * 3 2 1 36 36 H 1.08999 * 109.47095 * 54.72947 * 4 2 1 37 37 H 1.09003 * 109.47252 * 174.73491 * 4 2 1 38 38 H 1.08993 * 109.47649 * 305.00579 * 7 5 4 39 39 H 1.09004 * 109.46545 * 65.00304 * 7 5 4 40 40 H 0.96998 * 119.99634 * 0.02562 * 8 7 5 41 41 H 0.97007 * 119.99863 * 179.97438 * 12 11 9 42 42 H 0.96998 * 120.00057 * 92.43634 * 17 5 4 43 43 H 1.08004 * 119.91569 * 180.28098 * 23 21 20 44 44 H 1.07997 * 119.91686 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6409 -2.1969 -1.1848 6 1 0.5645 -2.2759 -1.0325 7 6 2.3714 -2.8725 -0.0225 8 7 2.0828 -4.3087 -0.0330 9 6 2.6307 -5.1241 0.9209 10 1 3.2752 -4.7084 1.6813 11 6 2.3576 -6.4851 0.9106 12 7 1.5726 -6.9918 -0.0164 13 14 3.1044 -7.5974 2.2123 14 1 2.6600 -7.1526 3.5576 15 1 2.6606 -8.9959 1.9823 16 1 4.5856 -7.5280 2.1322 17 7 2.0062 -2.8569 -2.4407 18 6 1.1463 -2.8540 -3.4785 19 8 0.1064 -2.2278 -3.4046 20 6 1.4663 -3.6096 -4.7032 21 6 1.0698 -4.9462 -4.8285 22 9 0.3917 -5.5483 -3.8271 23 6 1.3682 -5.6460 -5.9811 24 6 2.0683 -5.0316 -7.0074 25 9 2.3613 -5.7240 -8.1299 26 6 2.4693 -3.7101 -6.8880 27 6 2.1728 -2.9958 -5.7440 28 9 2.5639 -1.7077 -5.6296 29 1 -0.3634 0.4560 0.9210 30 1 -0.3634 0.5696 -0.8553 31 1 -0.3634 -1.0255 -0.0656 32 1 1.8932 -0.5139 0.8900 33 1 1.6766 1.9563 0.8900 34 1 3.1300 1.4424 -0.0005 35 1 1.6767 1.9564 -0.8900 36 1 1.6016 -0.2647 -2.1367 37 1 3.1259 -0.6403 -1.2977 38 1 3.4450 -2.7167 -0.1284 39 1 2.0328 -2.4408 0.9194 40 1 1.5037 -4.6820 -0.7157 41 1 1.3821 -7.9429 -0.0238 42 1 2.8670 -3.2959 -2.5254 43 1 1.0591 -6.6760 -6.0812 44 1 3.0141 -3.2379 -7.6920 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482394321.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:27:48 Heat of formation + Delta-G solvation = -145.570351 kcal Electronic energy + Delta-G solvation = -30891.751267 eV Core-core repulsion = 26201.639637 eV Total energy + Delta-G solvation = -4690.111629 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.43883 -49.39474 -49.09263 -39.97877 -38.46750 -37.13184 -34.86167 -33.57467 -31.64293 -30.93747 -30.70558 -28.93066 -27.02500 -25.57168 -24.44548 -23.47613 -22.75850 -21.62266 -20.58206 -19.46428 -18.86831 -18.14871 -18.01112 -17.03417 -16.65198 -16.25910 -16.14430 -16.06153 -15.64129 -15.45901 -15.40391 -15.17506 -14.63962 -14.50326 -14.37884 -14.18153 -13.61710 -13.51187 -13.25211 -12.84020 -12.78195 -12.55258 -12.32221 -12.24350 -12.15986 -11.96103 -11.87859 -11.66613 -11.12225 -10.88407 -10.79199 -10.78220 -10.48223 -10.28078 -10.07437 -9.86598 -9.75533 -9.25446 -9.17942 -8.92517 -8.76415 -6.97170 -5.78143 -3.08530 0.30720 0.51712 2.53674 2.73459 3.13448 3.28865 3.41943 3.46758 3.47509 3.82150 3.89989 4.37458 4.41613 4.53307 4.58112 4.99175 5.02442 5.10032 5.24739 5.32280 5.33970 5.40461 5.45732 5.53080 5.54671 5.57547 5.74272 5.75601 5.83737 5.91747 6.00785 6.09750 6.17089 6.20377 6.28041 6.33926 6.39482 6.49831 6.57204 6.68168 6.85382 7.64953 7.66620 8.27508 8.38910 9.50739 10.06125 10.41637 11.43556 Molecular weight = 344.15amu Principal moments of inertia in cm(-1) A = 0.007141 B = 0.004695 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3919.948400 B = 5961.778656 C = 9108.266025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.096 4.096 3 C -0.144 4.144 4 C -0.120 4.120 5 C 0.134 3.866 6 H 0.094 0.906 7 C 0.144 3.856 8 N -0.731 5.731 9 C -0.245 4.245 10 H 0.070 0.930 11 C -0.010 4.010 12 N -0.928 5.928 13 Si 0.906 3.094 14 H -0.286 1.286 15 H -0.291 1.291 16 H -0.286 1.286 17 N -0.695 5.695 18 C 0.569 3.431 19 O -0.524 6.524 20 C -0.208 4.208 21 C 0.209 3.791 22 F -0.095 7.095 23 C -0.204 4.204 24 C 0.176 3.824 25 F -0.120 7.120 26 C -0.208 4.208 27 C 0.193 3.807 28 F -0.114 7.114 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.078 0.922 33 H 0.052 0.948 34 H 0.052 0.948 35 H 0.051 0.949 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.024 0.976 39 H 0.038 0.962 40 H 0.386 0.614 41 H 0.256 0.744 42 H 0.406 0.594 43 H 0.163 0.837 44 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.089 10.167 -13.109 16.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.115 4.115 3 C -0.201 4.201 4 C -0.159 4.159 5 C 0.030 3.970 6 H 0.112 0.888 7 C 0.016 3.984 8 N -0.376 5.376 9 C -0.376 4.376 10 H 0.088 0.912 11 C -0.206 4.206 12 N -0.576 5.576 13 Si 0.737 3.263 14 H -0.213 1.213 15 H -0.217 1.217 16 H -0.213 1.213 17 N -0.344 5.344 18 C 0.352 3.648 19 O -0.400 6.400 20 C -0.214 4.214 21 C 0.188 3.812 22 F -0.072 7.072 23 C -0.224 4.224 24 C 0.156 3.844 25 F -0.098 7.098 26 C -0.228 4.228 27 C 0.173 3.827 28 F -0.092 7.092 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.042 0.958 39 H 0.055 0.945 40 H 0.220 0.780 41 H 0.066 0.934 42 H 0.241 0.759 43 H 0.181 0.819 44 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 1.417 10.536 -12.872 16.695 hybrid contribution 0.656 -1.148 0.411 1.385 sum 2.074 9.388 -12.462 15.739 Atomic orbital electron populations 1.21883 0.95153 1.02416 1.01125 1.21124 0.96127 0.95822 0.98450 1.21821 1.00727 0.96191 1.01395 1.21971 1.00931 0.94572 0.98425 1.21483 1.01661 0.91124 0.82740 0.88806 1.21023 0.96492 0.86547 0.94300 1.42345 1.58913 1.00973 1.35392 1.19142 1.23340 0.89097 1.05982 0.91238 1.24741 1.00192 0.96883 0.98803 1.69664 1.40343 1.12386 1.35179 0.86294 0.78625 0.80033 0.81342 1.21268 1.21706 1.21310 1.45953 1.19959 1.55782 1.12725 1.17535 0.84191 0.80596 0.82488 1.90818 1.24980 1.42772 1.81430 1.20072 1.07749 0.95114 0.98431 1.16866 0.90928 0.88175 0.85261 1.91750 1.75538 1.82320 1.57620 1.21062 1.05160 1.03297 0.92851 1.16900 0.95592 0.89011 0.82874 1.91578 1.90926 1.78692 1.48610 1.20908 1.07998 0.94120 0.99797 1.16734 0.94186 0.79175 0.92651 1.91598 1.88107 1.33452 1.96003 0.93077 0.92896 0.92001 0.90382 0.92875 0.92863 0.92992 0.91566 0.91746 0.95831 0.94453 0.77999 0.93440 0.75912 0.81912 0.82224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.04 37.15 0.34 -1.61 16 2 C -0.10 -1.22 2.80 -90.62 -0.25 -1.47 16 3 C -0.14 -1.53 9.19 37.16 0.34 -1.19 16 4 C -0.12 -1.66 4.45 -26.73 -0.12 -1.78 16 5 C 0.13 2.24 2.08 -67.92 -0.14 2.10 16 6 H 0.09 1.77 5.68 -51.93 -0.30 1.48 16 7 C 0.14 2.76 5.49 -4.04 -0.02 2.73 16 8 N -0.73 -17.86 5.43 -59.91 -0.33 -18.18 16 9 C -0.24 -6.64 9.99 -15.06 -0.15 -6.80 16 10 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 11 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 12 N -0.93 -27.49 13.06 55.49 0.72 -26.77 16 13 Si 0.91 22.03 29.55 -169.99 -5.02 17.01 16 14 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 15 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 16 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 17 N -0.69 -11.45 4.49 -54.88 -0.25 -11.69 16 18 C 0.57 9.78 6.51 -12.52 -0.08 9.70 16 19 O -0.52 -10.45 16.78 5.27 0.09 -10.36 16 20 C -0.21 -3.03 5.64 -104.85 -0.59 -3.62 16 21 C 0.21 2.98 7.29 -38.98 -0.28 2.70 16 22 F -0.09 -1.68 16.83 2.25 0.04 -1.64 16 23 C -0.20 -2.28 9.99 -39.50 -0.39 -2.67 16 24 C 0.18 1.76 7.30 -39.31 -0.29 1.47 16 25 F -0.12 -1.16 17.26 2.25 0.04 -1.12 16 26 C -0.21 -1.99 9.99 -39.50 -0.39 -2.38 16 27 C 0.19 2.32 7.29 -38.98 -0.28 2.03 16 28 F -0.11 -1.41 16.83 2.25 0.04 -1.37 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.92 6.30 -51.93 -0.33 0.59 16 32 H 0.08 1.03 6.47 -51.93 -0.34 0.69 16 33 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.04 0.72 6.72 -51.93 -0.35 0.37 16 40 H 0.39 10.12 7.33 -40.82 -0.30 9.82 16 41 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 42 H 0.41 6.35 8.62 -40.82 -0.35 6.00 16 43 H 0.16 1.52 8.06 -52.48 -0.42 1.10 16 44 H 0.16 1.10 8.06 -52.49 -0.42 0.67 16 LS Contribution 382.60 15.07 5.77 5.77 Total: -1.00 -31.22 382.60 -7.06 -38.27 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: -5.73 Total: 11.24 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: -2.42 Total: -1.16 kcal Atomic # 7 Polarization: -56.80 SS G_CDS: 0.15 Total: -56.65 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.09 Total: -10.36 kcal Atomic # 9 Polarization: -4.24 SS G_CDS: 0.11 Total: -4.13 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.22 -7.06 -38.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482394321.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.298 kcal (2) G-P(sol) polarization free energy of solvation -31.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds