Wall clock time and date at job start Wed Apr 1 2020 02:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53008 * 109.46916 * 2 1 4 4 C 1.53001 * 109.47108 * 119.99254 * 2 1 3 5 5 H 1.08992 * 109.47820 * 300.00319 * 4 2 1 6 6 C 1.53003 * 109.46949 * 60.00539 * 4 2 1 7 7 C 1.52996 * 109.47301 * 184.99469 * 6 4 2 8 8 N 1.46498 * 109.47059 * 179.97438 * 7 6 4 9 9 C 1.34777 * 119.99828 * 179.72339 * 8 7 6 10 10 O 1.21583 * 119.99943 * 0.28074 * 9 8 7 11 11 C 1.47578 * 120.00056 * 180.27917 * 9 8 7 12 12 C 1.39740 * 120.13270 * 0.02562 * 11 9 8 13 13 C 1.37748 * 119.94620 * 180.02562 * 12 11 9 14 14 C 1.38723 * 120.21101 * 359.97438 * 13 12 11 15 15 F 1.35097 * 119.86251 * 180.02562 * 14 13 12 16 16 C 1.38657 * 120.26962 * 0.02562 * 14 13 12 17 17 F 1.35100 * 119.97531 * 179.97438 * 16 14 13 18 18 C 1.38391 * 120.04882 * 359.72598 * 16 14 13 19 19 F 1.35106 * 120.10244 * 180.27522 * 18 16 14 20 20 N 1.46503 * 109.46962 * 179.97438 * 4 2 1 21 21 C 1.36938 * 119.99628 * 85.00236 * 20 4 2 22 22 H 1.08001 * 120.00307 * 0.02562 * 21 20 4 23 23 C 1.38816 * 120.00044 * 179.97438 * 21 20 4 24 24 N 1.31609 * 120.00152 * 180.02562 * 23 21 20 25 25 Si 1.86802 * 119.99773 * 0.02562 * 23 21 20 26 26 H 1.48494 * 109.47170 * 89.99582 * 25 23 21 27 27 H 1.48507 * 109.46991 * 209.99967 * 25 23 21 28 28 H 1.48502 * 109.46956 * 329.99388 * 25 23 21 29 29 H 1.09000 * 109.47371 * 299.99980 * 1 2 3 30 30 H 1.08991 * 109.47521 * 60.00056 * 1 2 3 31 31 H 1.09003 * 109.46801 * 180.02562 * 1 2 3 32 32 H 1.08992 * 109.47040 * 240.00050 * 2 1 3 33 33 H 1.08994 * 109.47242 * 180.02562 * 3 2 1 34 34 H 1.08998 * 109.46585 * 300.00236 * 3 2 1 35 35 H 1.09000 * 109.47084 * 59.99845 * 3 2 1 36 36 H 1.09004 * 109.47038 * 64.99479 * 6 4 2 37 37 H 1.09000 * 109.46939 * 305.00131 * 6 4 2 38 38 H 1.09004 * 109.47066 * 60.00027 * 7 6 4 39 39 H 1.08994 * 109.46974 * 300.00175 * 7 6 4 40 40 H 0.97001 * 120.00384 * 0.02562 * 8 7 6 41 41 H 1.07996 * 120.02429 * 0.02562 * 12 11 9 42 42 H 1.07994 * 119.89547 * 180.02562 * 13 12 11 43 43 H 0.97002 * 120.00479 * 265.00508 * 20 4 2 44 44 H 0.97005 * 120.00432 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 1.6767 -0.2073 2.1393 6 6 1.5301 -2.1636 1.2494 7 6 1.9349 -2.8476 2.5567 8 7 1.4461 -4.2287 2.5570 9 6 1.6913 -5.0301 3.6125 10 8 2.3138 -4.6053 4.5666 11 6 1.2043 -6.4231 3.6102 12 6 0.4890 -6.9144 2.5149 13 6 0.0357 -8.2151 2.5170 14 6 0.2874 -9.0403 3.6034 15 9 -0.1600 -10.3150 3.5978 16 6 0.9962 -8.5620 4.6949 17 9 1.2375 -9.3706 5.7500 18 6 1.4612 -7.2586 4.7021 19 9 2.1568 -6.7931 5.7627 20 7 3.5050 -0.7216 1.2490 21 6 4.1902 0.3531 1.7498 22 1 3.6505 1.2009 2.1454 23 6 5.5783 0.3525 1.7500 24 7 6.2368 1.3852 2.2318 25 14 6.5117 -1.1142 1.0665 26 1 6.7594 -0.9112 -0.3835 27 1 7.8092 -1.2497 1.7762 28 1 5.7085 -2.3476 1.2636 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 3.1299 1.4427 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 1.9647 -2.7027 0.4076 37 1 0.4438 -2.1650 1.1598 38 1 1.5003 -2.3086 3.3986 39 1 3.0212 -2.8462 2.6463 40 1 0.9498 -4.5677 1.7957 41 1 0.2918 -6.2747 1.6674 42 1 -0.5166 -8.5941 1.6699 43 1 3.9898 -1.4832 0.8940 44 1 7.2068 1.3849 2.2316 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485788621.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:40:04 Heat of formation + Delta-G solvation = -135.930040 kcal Electronic energy + Delta-G solvation = -29746.774101 eV Core-core repulsion = 25057.080507 eV Total energy + Delta-G solvation = -4689.693594 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -50.21975 -49.60395 -48.85293 -40.37989 -38.58558 -37.62243 -35.01169 -33.10771 -32.03664 -31.21404 -30.99913 -29.80314 -26.49798 -25.82395 -24.40731 -23.73787 -22.62616 -21.28138 -21.10649 -19.49340 -19.07832 -18.48100 -18.26060 -17.45604 -17.27066 -16.95678 -16.34545 -15.97014 -15.77752 -15.63686 -15.32022 -15.07236 -14.95651 -14.83587 -14.47719 -14.07157 -13.93086 -13.73612 -13.59214 -13.31039 -12.69244 -12.65544 -12.42061 -12.41640 -12.30966 -11.93173 -11.68696 -11.44546 -11.07099 -10.88449 -10.81915 -10.51952 -10.30819 -10.19660 -10.08356 -9.91454 -9.56823 -9.52652 -9.44483 -9.09495 -8.87670 -7.27033 -5.76389 -3.11528 -0.21193 0.14390 2.11403 2.62681 2.92478 3.05861 3.37432 3.39261 3.46744 3.56327 3.66227 3.79631 3.97978 4.13305 4.59350 4.76566 4.92542 5.04689 5.08001 5.08546 5.15022 5.22521 5.33156 5.42437 5.54460 5.58316 5.73568 5.83151 5.92899 5.96007 6.04933 6.17744 6.18744 6.32462 6.35148 6.43973 6.55773 6.60681 6.73529 7.01004 7.27684 7.34462 7.98682 7.99864 8.42123 9.20301 9.92758 10.11463 11.41701 Molecular weight = 344.15amu Principal moments of inertia in cm(-1) A = 0.013695 B = 0.002568 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.044095 B =10901.061815 C =12126.220680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.110 4.110 3 C -0.141 4.141 4 C 0.190 3.810 5 H 0.059 0.941 6 C -0.140 4.140 7 C 0.120 3.880 8 N -0.719 5.719 9 C 0.552 3.448 10 O -0.511 6.511 11 C -0.151 4.151 12 C -0.038 4.038 13 C -0.142 4.142 14 C 0.121 3.879 15 F -0.115 7.115 16 C 0.023 3.977 17 F -0.113 7.113 18 C 0.158 3.842 19 F -0.091 7.091 20 N -0.746 5.746 21 C -0.238 4.238 22 H 0.094 0.906 23 C 0.006 3.994 24 N -0.933 5.933 25 Si 0.880 3.120 26 H -0.286 1.286 27 H -0.292 1.292 28 H -0.278 1.278 29 H 0.050 0.950 30 H 0.044 0.956 31 H 0.048 0.952 32 H 0.058 0.942 33 H 0.089 0.911 34 H 0.029 0.971 35 H 0.043 0.957 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.396 0.604 41 H 0.156 0.844 42 H 0.162 0.838 43 H 0.360 0.640 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.716 -19.927 -3.417 26.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.131 4.131 3 C -0.198 4.198 4 C 0.080 3.920 5 H 0.077 0.923 6 C -0.179 4.179 7 C -0.002 4.002 8 N -0.371 5.371 9 C 0.336 3.664 10 O -0.386 6.386 11 C -0.155 4.155 12 C -0.057 4.057 13 C -0.161 4.161 14 C 0.100 3.900 15 F -0.093 7.093 16 C 0.002 3.998 17 F -0.091 7.091 18 C 0.136 3.864 19 F -0.068 7.068 20 N -0.389 5.389 21 C -0.367 4.367 22 H 0.111 0.889 23 C -0.190 4.190 24 N -0.580 5.580 25 Si 0.711 3.289 26 H -0.213 1.213 27 H -0.219 1.219 28 H -0.204 1.204 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.107 0.893 34 H 0.048 0.952 35 H 0.062 0.938 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.102 0.898 40 H 0.231 0.769 41 H 0.174 0.826 42 H 0.179 0.821 43 H 0.193 0.807 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -17.137 -19.413 -2.496 26.015 hybrid contribution 0.667 -1.553 -0.484 1.758 sum -16.470 -20.966 -2.981 26.828 Atomic orbital electron populations 1.21935 0.96901 1.00583 1.01059 1.21741 0.93515 0.98025 0.99863 1.21839 1.04500 0.94418 0.99080 1.20164 0.84735 0.91031 0.96045 0.92331 1.22198 1.01111 0.98295 0.96266 1.21558 1.01181 0.78685 0.98793 1.45976 1.57453 1.13972 1.19667 1.17699 0.80741 0.84234 0.83692 1.90930 1.38939 1.74933 1.33809 1.20170 1.04450 0.95915 0.95002 1.21162 0.93020 0.94840 0.96677 1.21088 1.03201 0.93568 0.98272 1.17584 0.97419 0.80745 0.94214 1.91593 1.86532 1.34711 1.96447 1.17449 1.05951 0.88919 0.87524 1.91593 1.92711 1.71297 1.53512 1.17351 0.93519 0.89782 0.85706 1.91695 1.74745 1.88065 1.52345 1.42823 1.00494 1.20489 1.75084 1.19039 0.89264 0.95947 1.32471 0.88854 1.24652 0.96240 0.97049 1.01088 1.69683 1.07002 1.29867 1.51477 0.86618 0.79998 0.83518 0.78744 1.21279 1.21885 1.20435 0.93067 0.93652 0.93277 0.92312 0.89264 0.95185 0.93809 0.91652 0.90890 0.90945 0.89849 0.76915 0.82614 0.82075 0.80733 0.93093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 8.85 37.16 0.33 -1.43 16 2 C -0.11 -1.68 2.69 -90.61 -0.24 -1.93 16 3 C -0.14 -2.49 8.26 37.16 0.31 -2.19 16 4 C 0.19 3.16 2.02 -67.93 -0.14 3.03 16 5 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 6 C -0.14 -1.74 4.65 -26.73 -0.12 -1.86 16 7 C 0.12 1.69 5.56 -4.04 -0.02 1.66 16 8 N -0.72 -7.75 5.51 -61.34 -0.34 -8.09 16 9 C 0.55 7.28 7.76 -12.45 -0.10 7.18 16 10 O -0.51 -9.35 15.33 5.29 0.08 -9.27 16 11 C -0.15 -1.48 5.88 -104.92 -0.62 -2.10 16 12 C -0.04 -0.20 9.53 -39.20 -0.37 -0.58 16 13 C -0.14 -0.68 10.00 -39.58 -0.40 -1.08 16 14 C 0.12 0.91 7.31 -39.25 -0.29 0.63 16 15 F -0.11 -0.93 17.17 2.25 0.04 -0.89 16 16 C 0.02 0.23 7.30 -39.37 -0.29 -0.06 16 17 F -0.11 -1.27 17.09 2.25 0.04 -1.23 16 18 C 0.16 1.80 7.29 -38.92 -0.28 1.51 16 19 F -0.09 -1.32 15.46 2.25 0.03 -1.28 16 20 N -0.75 -15.89 4.26 -53.42 -0.23 -16.12 16 21 C -0.24 -6.21 8.05 -15.06 -0.12 -6.33 16 22 H 0.09 2.64 7.63 -52.49 -0.40 2.24 16 23 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 24 N -0.93 -28.68 13.97 55.49 0.78 -27.90 16 25 Si 0.88 21.72 27.74 -169.99 -4.71 17.00 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 27 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 28 H -0.28 -6.46 6.52 56.52 0.37 -6.09 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.49 6.32 -51.93 -0.33 0.16 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.09 1.92 6.01 -51.93 -0.31 1.61 16 34 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.71 6.17 -51.93 -0.32 0.39 16 38 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.08 1.48 7.75 -51.93 -0.40 1.08 16 40 H 0.40 2.60 6.50 -40.82 -0.27 2.33 16 41 H 0.16 0.32 6.40 -52.49 -0.34 -0.02 16 42 H 0.16 0.27 8.06 -52.49 -0.42 -0.15 16 43 H 0.36 7.67 5.66 -40.82 -0.23 7.44 16 44 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 371.79 15.07 5.60 5.60 Total: -1.00 -33.47 371.79 -6.72 -40.19 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -5.57 Total: 5.46 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: -2.45 Total: -3.48 kcal Atomic # 7 Polarization: -52.32 SS G_CDS: 0.21 Total: -52.11 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: 0.08 Total: -9.27 kcal Atomic # 9 Polarization: -3.51 SS G_CDS: 0.11 Total: -3.40 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.71 Total: 17.00 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.47 -6.72 -40.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485788621.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.737 kcal (2) G-P(sol) polarization free energy of solvation -33.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds