Wall clock time and date at job start Wed Apr 1 2020 02:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47151 * 2 1 4 4 C 1.50704 * 109.47024 * 240.00570 * 2 1 3 5 5 H 1.07994 * 120.00122 * 240.00316 * 4 2 1 6 6 C 1.37876 * 120.00284 * 59.99558 * 4 2 1 7 7 N 1.31519 * 119.99632 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00437 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46872 * 90.00549 * 8 6 4 10 10 H 1.48498 * 109.47322 * 210.00211 * 8 6 4 11 11 H 1.48498 * 109.46972 * 330.00598 * 8 6 4 12 12 C 1.52991 * 109.47265 * 120.00451 * 2 1 3 13 13 N 1.46493 * 109.47190 * 300.00285 * 12 2 1 14 14 C 1.34787 * 120.00189 * 180.02562 * 13 12 2 15 15 O 1.21552 * 119.99635 * 359.97438 * 14 13 12 16 16 C 1.47855 * 120.00207 * 179.97438 * 14 13 12 17 17 C 1.39623 * 120.10994 * 359.72282 * 16 14 13 18 18 C 1.37977 * 119.98109 * 179.69742 * 17 16 14 19 19 C 1.38264 * 120.21715 * 0.57894 * 18 17 16 20 20 C 1.38903 * 120.22894 * 359.72194 * 19 18 17 21 21 N 1.40233 * 119.99928 * 180.02562 * 20 19 18 22 22 C 1.33871 * 122.76230 * 112.41001 * 21 20 19 23 23 O 1.21227 * 125.40143 * 359.97438 * 22 21 20 24 24 C 1.51324 * 109.20106 * 179.84836 * 22 21 20 25 25 C 1.54220 * 103.55498 * 0.38138 * 24 22 21 26 26 C 1.33881 * 122.75453 * 292.70284 * 21 20 19 27 27 O 1.21222 * 125.40255 * 0.02562 * 26 21 20 28 28 C 1.38590 * 120.01161 * 359.97319 * 20 19 18 29 29 H 1.08997 * 109.47269 * 299.99319 * 1 2 3 30 30 H 1.09002 * 109.47147 * 59.99999 * 1 2 3 31 31 H 1.09005 * 109.47168 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47158 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47646 * 300.00562 * 3 2 1 34 34 H 1.09001 * 109.46918 * 60.00380 * 3 2 1 35 35 H 0.97007 * 119.99729 * 179.97438 * 7 6 4 36 36 H 1.09009 * 109.47389 * 59.99994 * 12 2 1 37 37 H 1.09003 * 109.47319 * 179.97438 * 12 2 1 38 38 H 0.96993 * 120.00249 * 359.97438 * 13 12 2 39 39 H 1.07997 * 120.00719 * 359.97438 * 17 16 14 40 40 H 1.07998 * 119.88928 * 180.26896 * 18 17 16 41 41 H 1.07999 * 119.88943 * 179.69337 * 19 18 17 42 42 H 1.09000 * 110.79058 * 241.77476 * 24 22 21 43 43 H 1.08999 * 110.54920 * 118.88216 * 24 22 21 44 44 H 1.08996 * 110.61282 * 241.25944 * 25 24 22 45 45 H 1.09008 * 110.73811 * 118.36048 * 25 24 22 46 46 H 1.08000 * 120.10831 * 180.02562 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6532 -1.5884 -1.1316 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8303 -2.6033 8 14 2.3224 -1.1192 -4.0081 9 1 1.3447 -2.1611 -4.4126 10 1 2.4871 -0.1398 -5.1121 11 1 3.6307 -1.7563 -3.7122 12 6 2.0400 -0.7213 1.2491 13 7 1.5517 -0.0309 2.4453 14 6 1.8777 -0.4911 3.6695 15 8 2.5766 -1.4794 3.7808 16 6 1.3853 0.2060 4.8768 17 6 0.5872 1.3448 4.7515 18 6 0.1240 1.9896 5.8799 19 6 0.4573 1.5190 7.1365 20 6 1.2559 0.3906 7.2715 21 7 1.5906 -0.0828 8.5484 22 6 1.1397 -1.2476 9.0303 23 8 0.4083 -2.0150 8.4423 24 6 1.6904 -1.4560 10.4243 25 6 2.5386 -0.1917 10.6706 26 6 2.3826 0.5956 9.3879 27 8 2.8934 1.6705 9.1572 28 6 1.7212 -0.2682 6.1445 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 0.7094 1.1620 -3.4844 36 1 1.6767 -1.7491 1.2491 37 1 3.1301 -0.7217 1.2489 38 1 0.9943 0.7579 2.3564 39 1 0.3288 1.7181 3.7716 40 1 -0.4969 2.8678 5.7812 41 1 0.0959 2.0308 8.0162 42 1 2.3132 -2.3496 10.4647 43 1 0.8798 -1.5217 11.1500 44 1 3.5833 -0.4563 10.8337 45 1 2.1508 0.3743 11.5177 46 1 2.3419 -1.1460 6.2477 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001527971888.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:27 Heat of formation + Delta-G solvation = -68.659615 kcal Electronic energy + Delta-G solvation = -29488.552308 eV Core-core repulsion = 25343.632519 eV Total energy + Delta-G solvation = -4144.919789 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.57717 -39.98155 -38.97514 -38.30918 -36.38387 -36.23837 -34.07869 -33.29091 -31.51198 -30.81397 -29.74443 -26.68429 -25.88182 -25.74956 -25.17714 -23.85858 -23.27535 -22.58942 -21.05408 -19.65317 -18.90942 -18.37496 -17.50633 -16.94144 -16.75828 -16.42958 -15.78438 -15.67436 -15.34185 -14.84289 -14.74428 -14.64730 -14.62092 -14.38323 -14.06617 -13.98219 -13.51542 -13.29480 -13.15102 -12.93700 -12.53475 -12.30444 -12.16891 -11.91249 -11.79498 -11.41167 -11.21305 -11.06562 -10.88279 -10.70580 -10.66426 -10.42819 -10.41021 -10.21748 -9.71535 -9.66005 -9.30897 -9.22688 -9.08709 -8.81236 -8.48436 -8.34092 -6.03402 -4.13356 0.63224 0.95817 1.07368 2.01333 2.23306 2.88032 3.28066 3.35046 3.38645 3.57675 3.60833 3.70050 3.81701 3.90201 4.29800 4.39215 4.59888 4.60848 4.70123 4.90209 4.93312 4.98861 5.03130 5.07362 5.17307 5.23519 5.52628 5.69137 5.92388 6.04194 6.07688 6.21520 6.29852 6.34425 6.46346 6.52097 6.73723 6.79222 6.86903 6.90927 6.96216 6.99674 7.32871 7.37721 7.53445 7.68057 7.96707 7.98946 8.12297 8.36247 8.58801 8.87105 9.52490 10.98096 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.025349 B = 0.002144 C = 0.002083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.298199 B =13057.285776 C =13439.907551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.055 3.945 3 C -0.132 4.132 4 C -0.505 4.505 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.894 3.106 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.131 3.869 13 N -0.707 5.707 14 C 0.547 3.453 15 O -0.545 6.545 16 C -0.113 4.113 17 C -0.074 4.074 18 C -0.114 4.114 19 C -0.081 4.081 20 C 0.094 3.906 21 N -0.529 5.529 22 C 0.522 3.478 23 O -0.464 6.464 24 C -0.153 4.153 25 C -0.153 4.153 26 C 0.524 3.476 27 O -0.469 6.469 28 C -0.043 4.043 29 H 0.005 0.995 30 H 0.086 0.914 31 H 0.028 0.972 32 H 0.027 0.973 33 H 0.087 0.913 34 H 0.005 0.995 35 H 0.260 0.740 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.398 0.602 39 H 0.137 0.863 40 H 0.139 0.861 41 H 0.129 0.871 42 H 0.125 0.875 43 H 0.123 0.877 44 H 0.124 0.876 45 H 0.124 0.876 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.657 2.303 27.402 27.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.055 3.945 3 C -0.189 4.189 4 C -0.544 4.544 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.722 3.278 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 C 0.009 3.991 13 N -0.358 5.358 14 C 0.333 3.667 15 O -0.424 6.424 16 C -0.117 4.117 17 C -0.093 4.093 18 C -0.132 4.132 19 C -0.100 4.100 20 C 0.006 3.994 21 N -0.270 5.270 22 C 0.311 3.689 23 O -0.333 6.333 24 C -0.193 4.193 25 C -0.193 4.193 26 C 0.314 3.686 27 O -0.339 6.339 28 C -0.063 4.063 29 H 0.024 0.976 30 H 0.105 0.895 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.105 0.895 34 H 0.024 0.976 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.234 0.766 39 H 0.154 0.846 40 H 0.157 0.843 41 H 0.146 0.854 42 H 0.143 0.857 43 H 0.141 0.859 44 H 0.142 0.858 45 H 0.142 0.858 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.348 1.866 26.834 26.933 hybrid contribution 0.018 -0.036 -0.943 0.944 sum -1.330 1.830 25.891 25.989 Atomic orbital electron populations 1.21846 0.97712 0.99305 1.00079 1.18370 0.92837 0.92795 0.90520 1.21842 0.98699 0.98301 1.00083 1.20969 1.31507 1.12102 0.89818 0.92392 1.24882 0.94867 0.94920 0.98872 1.69803 1.36706 1.22689 1.23251 0.86558 0.79330 0.79371 0.82539 1.20706 1.21266 1.19904 1.21796 0.98340 0.95919 0.83086 1.46245 1.52122 1.31616 1.05801 1.18129 0.80940 0.84273 0.83372 1.90748 1.38538 1.26291 1.86856 1.20013 1.00785 0.97169 0.93709 1.21553 0.94539 0.93465 0.99733 1.20987 1.00526 1.00523 0.91165 1.21204 0.95365 0.94830 0.98624 1.17453 1.01316 0.97511 0.83094 1.44399 1.45586 1.22151 1.14861 1.21016 0.79322 0.79548 0.88981 1.90841 1.32535 1.45556 1.64386 1.22470 1.02144 1.00423 0.94262 1.22471 1.04418 0.95912 0.96509 1.21000 0.76415 0.85131 0.86083 1.90813 1.45412 1.19309 1.78360 1.21141 0.96346 0.98825 0.90018 0.97578 0.89490 0.95326 0.95333 0.89480 0.97588 0.92990 0.92407 0.92417 0.76574 0.84550 0.84292 0.85351 0.85712 0.85851 0.85781 0.85835 0.84321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 8.08 37.16 0.30 -2.65 16 2 C 0.06 1.28 0.50 -155.66 -0.08 1.20 16 3 C -0.13 -2.94 8.08 37.16 0.30 -2.64 16 4 C -0.51 -13.21 8.01 -34.44 -0.28 -13.49 16 5 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 6 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 7 N -0.89 -23.49 9.35 55.43 0.52 -22.97 16 8 Si 0.89 20.74 29.54 -169.99 -5.02 15.72 16 9 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 12 C 0.13 2.80 4.50 -4.05 -0.02 2.78 16 13 N -0.71 -12.91 4.91 -61.25 -0.30 -13.21 16 14 C 0.55 10.12 7.77 -12.32 -0.10 10.03 16 15 O -0.54 -11.91 16.35 5.32 0.09 -11.82 16 16 C -0.11 -1.71 5.87 -104.99 -0.62 -2.33 16 17 C -0.07 -0.90 9.54 -39.16 -0.37 -1.28 16 18 C -0.11 -1.16 10.02 -39.67 -0.40 -1.56 16 19 C -0.08 -0.88 9.79 -39.33 -0.38 -1.26 16 20 C 0.09 1.19 4.94 -83.64 -0.41 0.78 16 21 N -0.53 -5.39 2.61 -59.44 -0.16 -5.54 16 22 C 0.52 4.83 7.96 -11.08 -0.09 4.74 16 23 O -0.46 -6.24 17.60 5.60 0.10 -6.14 16 24 C -0.15 -0.51 7.03 -26.94 -0.19 -0.70 16 25 C -0.15 -0.48 7.03 -26.94 -0.19 -0.67 16 26 C 0.52 4.57 7.95 -11.08 -0.09 4.48 16 27 O -0.47 -5.79 17.60 5.61 0.10 -5.69 16 28 C -0.04 -0.64 9.35 -39.00 -0.36 -1.00 16 29 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 30 H 0.09 2.15 6.07 -51.93 -0.32 1.83 16 31 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.09 2.15 6.07 -51.93 -0.32 1.83 16 34 H 0.01 0.10 6.86 -51.93 -0.36 -0.26 16 35 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 36 H 0.06 1.30 8.14 -51.92 -0.42 0.88 16 37 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.40 6.43 4.19 -40.82 -0.17 6.26 16 39 H 0.14 1.45 6.40 -52.49 -0.34 1.11 16 40 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 41 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 42 H 0.12 0.22 8.14 -51.93 -0.42 -0.20 16 43 H 0.12 0.15 8.14 -51.93 -0.42 -0.27 16 44 H 0.12 0.19 8.14 -51.93 -0.42 -0.24 16 45 H 0.12 0.11 8.14 -51.92 -0.42 -0.31 16 46 H 0.14 2.15 7.65 -52.49 -0.40 1.75 16 LS Contribution 382.25 15.07 5.76 5.76 Total: -1.00 -33.98 382.25 -8.00 -41.98 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -6.02 Total: 3.83 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: -3.06 Total: -1.93 kcal Atomic # 7 Polarization: -41.78 SS G_CDS: 0.06 Total: -41.72 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: 0.28 Total: -23.65 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.98 -8.00 -41.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001527971888.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.676 kcal (2) G-P(sol) polarization free energy of solvation -33.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds