Wall clock time and date at job start Wed Apr 1 2020 02:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53007 * 109.46895 * 2 1 4 4 C 1.52992 * 109.47509 * 120.00386 * 2 1 3 5 5 C 1.53000 * 109.47283 * 174.80514 * 4 2 1 6 6 H 1.09001 * 109.46861 * 54.03320 * 5 4 2 7 7 C 1.52998 * 109.47052 * 294.03076 * 5 4 2 8 8 N 1.46496 * 109.46939 * 185.00236 * 7 5 4 9 9 C 1.36941 * 120.00062 * 180.02562 * 8 7 5 10 10 H 1.08001 * 119.99573 * 359.97438 * 9 8 7 11 11 C 1.38804 * 120.00123 * 179.97438 * 9 8 7 12 12 N 1.31624 * 120.00290 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 120.00045 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.46869 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.47179 * 120.00277 * 13 11 9 16 16 H 1.48501 * 109.47088 * 239.99938 * 13 11 9 17 17 N 1.46503 * 109.46915 * 174.03053 * 5 4 2 18 18 C 1.34778 * 119.99609 * 277.91128 * 17 5 4 19 19 O 1.21582 * 120.00338 * 354.98568 * 18 17 5 20 20 C 1.47581 * 119.99367 * 174.98500 * 18 17 5 21 21 C 1.39739 * 120.13410 * 0.02562 * 20 18 17 22 22 C 1.37752 * 119.93972 * 180.02562 * 21 20 18 23 23 C 1.38711 * 120.22077 * 359.97438 * 22 21 20 24 24 F 1.35096 * 119.86887 * 180.02562 * 23 22 21 25 25 C 1.38670 * 120.26533 * 0.02562 * 23 22 21 26 26 F 1.35089 * 119.97417 * 180.02562 * 25 23 22 27 27 C 1.38383 * 120.05112 * 359.97438 * 25 23 22 28 28 F 1.35097 * 120.10894 * 180.02562 * 27 25 23 29 29 H 1.09001 * 109.46739 * 299.99640 * 1 2 3 30 30 H 1.08998 * 109.47012 * 59.99660 * 1 2 3 31 31 H 1.08999 * 109.47021 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46779 * 240.00843 * 2 1 3 33 33 H 1.08997 * 109.46783 * 65.52662 * 3 2 1 34 34 H 1.09003 * 109.46744 * 185.52313 * 3 2 1 35 35 H 1.08995 * 109.47431 * 305.52682 * 3 2 1 36 36 H 1.09003 * 109.47273 * 54.80510 * 4 2 1 37 37 H 1.09004 * 109.47106 * 294.80761 * 4 2 1 38 38 H 1.09002 * 109.46766 * 304.99822 * 7 5 4 39 39 H 1.09000 * 109.47429 * 64.99788 * 7 5 4 40 40 H 0.97006 * 119.99920 * 359.97438 * 8 7 5 41 41 H 0.97000 * 120.00178 * 179.97438 * 12 11 9 42 42 H 0.96994 * 119.99947 * 97.91492 * 17 5 4 43 43 H 1.07992 * 120.02680 * 359.74389 * 21 20 18 44 44 H 1.08002 * 119.88989 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5645 -0.8353 1.1854 6 1 3.9967 0.1534 1.0312 7 6 3.9594 -1.7512 0.0252 8 7 5.4099 -1.9563 0.0369 9 6 5.9975 -2.7460 -0.9152 10 1 5.3914 -3.2179 -1.6744 11 6 7.3719 -2.9398 -0.9045 12 7 8.1104 -2.3650 0.0210 13 14 8.1732 -4.0177 -2.2028 14 1 7.1316 -4.5434 -3.1214 15 1 9.1548 -3.2148 -2.9757 16 1 8.8705 -5.1511 -1.5437 17 7 4.0651 -1.3964 2.4428 18 6 4.2430 -0.5975 3.5136 19 8 4.0757 0.6024 3.4114 20 6 4.6409 -1.1794 4.8102 21 6 4.8344 -2.5581 4.9306 22 6 5.2052 -3.0970 6.1429 23 6 5.3879 -2.2754 7.2455 24 9 5.7521 -2.8114 8.4309 25 6 5.1983 -0.9061 7.1360 26 9 5.3783 -0.1115 8.2135 27 6 4.8257 -0.3530 5.9235 28 9 4.6411 0.9810 5.8153 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5137 -0.8900 33 1 1.7597 1.9270 0.9353 34 1 3.1256 1.4441 -0.0989 35 1 1.5982 1.9842 -0.8363 36 1 1.6029 -1.7186 1.2968 37 1 1.7547 -0.1566 2.1367 38 1 3.4558 -2.7119 0.1331 39 1 3.6651 -1.2906 -0.9178 40 1 5.9543 -1.5320 0.7186 41 1 9.0709 -2.5008 0.0287 42 1 4.2686 -2.3428 2.5045 43 1 4.6889 -3.2009 4.0752 44 1 5.3542 -4.1627 6.2352 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568334575.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:27:57 Heat of formation + Delta-G solvation = -162.137330 kcal Electronic energy + Delta-G solvation = -30467.366824 eV Core-core repulsion = 25776.536796 eV Total energy + Delta-G solvation = -4690.830028 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.95581 -50.35671 -49.63756 -41.38603 -39.55620 -38.35280 -36.34245 -35.21902 -33.18638 -32.06839 -31.80701 -30.20593 -27.99409 -27.19492 -25.69390 -24.54787 -24.34831 -22.91859 -21.78385 -20.60356 -19.88723 -19.27035 -19.15285 -18.85416 -17.99996 -17.75651 -17.33602 -16.84507 -16.80181 -16.66489 -16.21363 -16.07097 -15.87802 -15.72612 -15.59102 -15.30619 -15.23039 -15.00922 -14.55765 -14.30028 -14.21095 -13.79907 -13.43053 -13.35105 -13.16562 -13.04154 -13.02241 -12.91927 -12.77912 -12.59461 -12.16030 -11.98108 -11.90824 -11.73619 -11.54595 -11.36165 -11.13128 -10.89658 -10.27970 -10.17599 -9.95678 -8.96947 -7.90972 -5.20121 -0.86096 -0.46684 1.40895 1.50886 1.53011 1.61642 1.84958 2.19060 2.26570 2.59143 2.92349 2.96664 3.22665 3.32391 3.44517 3.53376 3.76249 3.89891 4.06845 4.14940 4.21195 4.22952 4.33868 4.45878 4.59012 4.61124 4.65067 4.74460 4.78865 4.83911 4.92720 4.98053 5.02860 5.06631 5.15157 5.16963 5.33326 5.37370 5.48973 5.50104 5.56635 5.58804 6.29785 6.44287 7.09075 7.37866 8.10701 8.34203 9.32066 Molecular weight = 344.15amu Principal moments of inertia in cm(-1) A = 0.007679 B = 0.003817 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3645.637778 B = 7334.786353 C =10050.520140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.096 4.096 3 C -0.147 4.147 4 C -0.108 4.108 5 C 0.144 3.856 6 H 0.063 0.937 7 C 0.148 3.852 8 N -0.743 5.743 9 C -0.238 4.238 10 H 0.080 0.920 11 C -0.070 4.070 12 N -0.968 5.968 13 Si 0.967 3.033 14 H -0.264 1.264 15 H -0.302 1.302 16 H -0.293 1.293 17 N -0.694 5.694 18 C 0.556 3.444 19 O -0.565 6.565 20 C -0.161 4.161 21 C -0.018 4.018 22 C -0.115 4.115 23 C 0.127 3.873 24 F -0.114 7.114 25 C 0.010 3.990 26 F -0.125 7.125 27 C 0.133 3.867 28 F -0.117 7.117 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.047 0.953 34 H 0.036 0.964 35 H 0.064 0.936 36 H 0.085 0.915 37 H 0.056 0.944 38 H 0.046 0.954 39 H 0.040 0.960 40 H 0.374 0.626 41 H 0.249 0.751 42 H 0.413 0.587 43 H 0.184 0.816 44 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.548 -3.262 11.050 17.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.115 4.115 3 C -0.204 4.204 4 C -0.147 4.147 5 C 0.039 3.961 6 H 0.081 0.919 7 C 0.021 3.979 8 N -0.386 5.386 9 C -0.370 4.370 10 H 0.098 0.902 11 C -0.262 4.262 12 N -0.619 5.619 13 Si 0.797 3.203 14 H -0.189 1.189 15 H -0.230 1.230 16 H -0.220 1.220 17 N -0.345 5.345 18 C 0.343 3.657 19 O -0.445 6.445 20 C -0.165 4.165 21 C -0.036 4.036 22 C -0.134 4.134 23 C 0.107 3.893 24 F -0.093 7.093 25 C -0.011 4.011 26 F -0.104 7.104 27 C 0.112 3.888 28 F -0.095 7.095 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.066 0.934 34 H 0.055 0.945 35 H 0.083 0.917 36 H 0.104 0.896 37 H 0.075 0.925 38 H 0.064 0.936 39 H 0.057 0.943 40 H 0.206 0.794 41 H 0.058 0.942 42 H 0.251 0.749 43 H 0.201 0.799 44 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -13.701 -2.473 10.873 17.665 hybrid contribution 1.417 0.216 0.162 1.442 sum -12.285 -2.257 11.035 16.667 Atomic orbital electron populations 1.21778 0.93554 1.02375 1.01954 1.21133 0.96890 0.95695 0.97735 1.21854 1.00211 0.96730 1.01587 1.21899 0.92533 1.01796 0.98508 1.21245 0.95004 0.97421 0.82409 0.91896 1.21148 0.84573 0.96809 0.95374 1.42556 1.02684 1.58623 1.34763 1.19640 0.90769 1.20490 1.06080 0.90195 1.25463 0.97073 1.02762 1.00951 1.69824 1.04867 1.49756 1.37414 0.85164 0.78327 0.77958 0.78822 1.18869 1.22987 1.22004 1.45770 1.65400 1.12783 1.10551 1.18037 0.77327 0.86144 0.84201 1.90824 1.52675 1.15724 1.85316 1.20037 1.08522 0.95366 0.92609 1.21544 0.91439 0.91425 0.99223 1.21503 0.99763 1.03111 0.88986 1.17692 0.99735 0.88301 0.83599 1.91591 1.88453 1.85565 1.43652 1.17526 1.11137 0.88716 0.83763 1.91536 1.93405 1.73280 1.52168 1.17550 1.00415 0.78350 0.92513 1.91591 1.91957 1.29582 1.96399 0.92921 0.91955 0.91662 0.90628 0.93416 0.94461 0.91666 0.89638 0.92492 0.93615 0.94266 0.79393 0.94207 0.74888 0.79895 0.77991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.19 71.98 0.66 -1.81 16 2 C -0.10 -2.16 2.80 -10.79 -0.03 -2.19 16 3 C -0.15 -3.70 8.82 71.98 0.64 -3.07 16 4 C -0.11 -2.63 4.40 30.59 0.13 -2.50 16 5 C 0.14 4.40 2.08 44.99 0.09 4.50 16 6 H 0.06 2.35 5.89 -2.39 -0.01 2.34 16 7 C 0.15 5.06 5.46 86.38 0.47 5.54 16 8 N -0.74 -34.01 5.43 -343.46 -1.87 -35.87 16 9 C -0.24 -12.17 9.99 84.03 0.84 -11.33 16 10 H 0.08 3.89 7.83 -2.91 -0.02 3.87 16 11 C -0.07 -3.78 5.50 84.86 0.47 -3.31 16 12 N -0.97 -56.51 13.06 21.65 0.28 -56.23 16 13 Si 0.97 43.71 29.55 68.60 2.03 45.74 16 14 H -0.26 -11.11 7.11 99.48 0.71 -10.41 16 15 H -0.30 -14.06 7.11 99.48 0.71 -13.36 16 16 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 17 N -0.69 -19.83 4.49 -445.65 -2.00 -21.83 16 18 C 0.56 17.74 7.65 86.71 0.66 18.40 16 19 O -0.57 -22.58 15.02 -3.97 -0.06 -22.64 16 20 C -0.16 -4.14 5.88 -20.05 -0.12 -4.26 16 21 C -0.02 -0.30 9.53 22.52 0.21 -0.08 16 22 C -0.12 -1.55 10.00 22.27 0.22 -1.33 16 23 C 0.13 2.41 7.31 22.49 0.16 2.57 16 24 F -0.11 -2.19 17.17 44.97 0.77 -1.41 16 25 C 0.01 0.24 7.30 22.41 0.16 0.40 16 26 F -0.13 -3.38 17.09 44.97 0.77 -2.61 16 27 C 0.13 3.77 7.29 22.70 0.17 3.94 16 28 F -0.12 -4.03 15.46 44.97 0.70 -3.34 16 29 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.08 1.76 6.48 -2.39 -0.02 1.74 16 33 H 0.05 1.24 8.14 -2.39 -0.02 1.23 16 34 H 0.04 1.10 6.72 -2.39 -0.02 1.08 16 35 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.06 1.52 8.10 -2.39 -0.02 1.50 16 38 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.04 1.37 6.73 -2.39 -0.02 1.36 16 40 H 0.37 18.81 7.33 -92.70 -0.68 18.13 16 41 H 0.25 14.25 8.31 -92.71 -0.77 13.47 16 42 H 0.41 10.05 6.62 -92.71 -0.61 9.43 16 43 H 0.18 2.17 6.41 -2.91 -0.02 2.15 16 44 H 0.20 1.15 8.06 -2.91 -0.02 1.13 16 Total: -1.00 -69.28 377.27 5.14 -64.14 By element: Atomic # 1 Polarization: 28.82 SS G_CDS: -0.23 Total: 28.59 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: 4.75 Total: 5.47 kcal Atomic # 7 Polarization: -110.34 SS G_CDS: -3.58 Total: -113.93 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: -0.06 Total: -22.64 kcal Atomic # 9 Polarization: -9.60 SS G_CDS: 2.24 Total: -7.36 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -69.28 5.14 -64.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568334575.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.000 kcal (2) G-P(sol) polarization free energy of solvation -69.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds