Wall clock time and date at job start Wed Apr 1 2020 03:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47151 * 2 1 4 4 N 1.46498 * 109.47427 * 120.00191 * 2 1 3 5 5 C 1.46505 * 119.99826 * 294.76124 * 4 2 1 6 6 C 1.52998 * 109.46995 * 270.00109 * 5 4 2 7 7 N 1.46497 * 109.47023 * 180.02562 * 6 5 4 8 8 C 1.46500 * 119.99595 * 269.99729 * 7 6 5 9 9 C 1.36932 * 120.00271 * 90.00104 * 7 6 5 10 10 H 1.08005 * 119.99949 * 21.19999 * 9 7 6 11 11 C 1.38816 * 120.00229 * 201.21001 * 9 7 6 12 12 N 1.31621 * 119.99907 * 15.79173 * 11 9 7 13 13 Si 1.86801 * 120.00273 * 195.80123 * 11 9 7 14 14 H 1.48499 * 109.46766 * 359.97438 * 13 11 9 15 15 H 1.48496 * 109.47217 * 119.99288 * 13 11 9 16 16 H 1.48498 * 109.46883 * 239.99558 * 13 11 9 17 17 C 1.34772 * 120.00265 * 114.76159 * 4 2 1 18 18 O 1.21565 * 120.00275 * 185.03235 * 17 4 2 19 19 C 1.47738 * 119.99898 * 4.75734 * 17 4 2 20 20 C 1.39629 * 120.10209 * 220.65498 * 19 17 4 21 21 C 1.38075 * 119.90100 * 179.79295 * 20 19 17 22 22 F 1.35098 * 119.95545 * 180.25209 * 21 20 19 23 23 C 1.38787 * 120.09775 * 0.48177 * 21 20 19 24 24 F 1.35093 * 119.90106 * 179.72200 * 23 21 20 25 25 C 1.38789 * 120.20446 * 359.74979 * 23 21 20 26 26 F 1.35095 * 119.95167 * 179.97438 * 25 23 21 27 27 C 1.38080 * 120.09766 * 0.02562 * 25 23 21 28 28 H 1.09001 * 109.47193 * 299.99473 * 1 2 3 29 29 H 1.08996 * 109.47574 * 59.99994 * 1 2 3 30 30 H 1.09008 * 109.46869 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47193 * 240.00527 * 2 1 3 32 32 H 1.08991 * 109.47478 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.46918 * 300.00336 * 3 2 1 34 34 H 1.08996 * 109.46937 * 59.99796 * 3 2 1 35 35 H 1.08996 * 109.46793 * 29.99479 * 5 4 2 36 36 H 1.08994 * 109.46865 * 150.00263 * 5 4 2 37 37 H 1.09005 * 109.47077 * 300.00140 * 6 5 4 38 38 H 1.09005 * 109.47386 * 59.99633 * 6 5 4 39 39 H 1.09002 * 109.47255 * 94.63795 * 8 7 6 40 40 H 1.09004 * 109.47263 * 214.63412 * 8 7 6 41 41 H 1.09003 * 109.47462 * 334.63098 * 8 7 6 42 42 H 0.96992 * 120.00304 * 180.02562 * 12 11 9 43 43 H 1.08002 * 120.04868 * 359.97438 * 20 19 17 44 44 H 1.07999 * 120.04848 * 179.97438 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.7616 -0.1268 2.5237 6 6 2.9071 0.8111 2.9097 7 7 2.6506 1.3745 4.2375 8 6 1.9053 2.6288 4.3694 9 6 3.1075 0.7287 5.3552 10 1 3.9215 0.0233 5.2765 11 6 2.5243 0.9806 6.5895 12 7 1.3559 1.5831 6.6546 13 14 3.3978 0.4647 8.1580 14 1 4.6862 -0.1891 7.8149 15 1 3.6579 1.6623 8.9966 16 1 2.5434 -0.4897 8.9093 17 6 2.7039 -1.8446 1.0753 18 8 3.0298 -2.4650 2.0686 19 6 3.0542 -2.3589 -0.2647 20 6 2.9556 -3.7246 -0.5384 21 6 3.2799 -4.2001 -1.7935 22 9 3.1801 -5.5206 -2.0611 23 6 3.7128 -3.3243 -2.7792 24 9 4.0345 -3.7947 -4.0041 25 6 3.8170 -1.9667 -2.5103 26 9 4.2394 -1.1188 -3.4734 27 6 3.4904 -1.4815 -1.2595 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0278 0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 3.1299 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9563 0.8899 35 1 0.8254 0.4312 2.5065 36 1 1.6907 -0.9333 3.2534 37 1 3.8434 0.2532 2.9268 38 1 2.9781 1.6176 2.1799 39 1 0.8512 2.4091 4.5388 40 1 2.2978 3.1978 5.2122 41 1 2.0124 3.2130 3.4554 42 1 0.9485 1.7594 7.5170 43 1 2.6234 -4.4075 0.2295 44 1 3.5721 -0.4250 -1.0510 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571614756.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:41 Heat of formation + Delta-G solvation = -100.816768 kcal Electronic energy + Delta-G solvation = -30903.538314 eV Core-core repulsion = 26215.367345 eV Total energy + Delta-G solvation = -4688.170968 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -50.16921 -49.57482 -48.84992 -40.77483 -38.42260 -36.92881 -35.49228 -32.18566 -31.61488 -31.10279 -30.93224 -28.30845 -27.29412 -25.89752 -24.82802 -23.97386 -23.15371 -21.92739 -20.65644 -19.69160 -18.55288 -18.27810 -18.10664 -17.20185 -16.88479 -16.69387 -16.30054 -15.87271 -15.85742 -15.49329 -15.30581 -15.03594 -14.77354 -14.58925 -14.34451 -14.10892 -13.59423 -13.43422 -13.38997 -13.14917 -12.91203 -12.67468 -12.33780 -12.26304 -12.24497 -12.10824 -11.83855 -11.58670 -11.20844 -10.99937 -10.92129 -10.78968 -10.51768 -10.16887 -9.98168 -9.87814 -9.74946 -9.42485 -9.28677 -8.71886 -8.46300 -6.79653 -5.75038 -3.17866 -0.03310 0.25423 2.24795 2.74346 2.88939 3.07168 3.39695 3.47314 3.50581 3.69029 3.73017 3.91146 3.97411 4.37843 4.52166 4.63772 4.84025 4.91291 4.93707 5.06312 5.18015 5.28493 5.40870 5.45182 5.50460 5.52725 5.66764 5.69513 5.71223 5.77023 6.04403 6.06026 6.10297 6.17802 6.28156 6.51593 6.65730 6.69728 6.95934 7.30706 7.46821 7.65136 7.83846 8.14357 8.37690 9.21971 9.84707 10.31624 11.30459 Molecular weight = 344.15amu Principal moments of inertia in cm(-1) A = 0.016640 B = 0.002850 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.310464 B = 9823.362158 C =10676.229789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.108 3.892 3 C -0.169 4.169 4 N -0.590 5.590 5 C 0.092 3.908 6 C 0.138 3.862 7 N -0.596 5.596 8 C 0.161 3.839 9 C -0.253 4.253 10 H 0.071 0.929 11 C 0.002 3.998 12 N -0.907 5.907 13 Si 0.903 3.097 14 H -0.277 1.277 15 H -0.290 1.290 16 H -0.290 1.290 17 C 0.551 3.449 18 O -0.513 6.513 19 C -0.069 4.069 20 C -0.086 4.086 21 C 0.097 3.903 22 F -0.115 7.115 23 C 0.047 3.953 24 F -0.114 7.114 25 C 0.095 3.905 26 F -0.115 7.115 27 C -0.112 4.112 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.096 0.904 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.088 0.912 37 H 0.045 0.955 38 H 0.045 0.955 39 H 0.029 0.971 40 H 0.044 0.956 41 H -0.002 1.002 42 H 0.252 0.748 43 H 0.164 0.836 44 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.009 -4.897 -21.583 22.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.005 3.995 3 C -0.227 4.227 4 N -0.323 5.323 5 C -0.032 4.032 6 C 0.009 3.991 7 N -0.319 5.319 8 C 0.017 3.983 9 C -0.383 4.383 10 H 0.089 0.911 11 C -0.196 4.196 12 N -0.552 5.552 13 Si 0.733 3.267 14 H -0.202 1.202 15 H -0.216 1.216 16 H -0.217 1.217 17 C 0.337 3.663 18 O -0.388 6.388 19 C -0.073 4.073 20 C -0.105 4.105 21 C 0.077 3.923 22 F -0.093 7.093 23 C 0.025 3.975 24 F -0.093 7.093 25 C 0.075 3.925 26 F -0.093 7.093 27 C -0.132 4.132 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.114 0.886 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.106 0.894 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.048 0.952 40 H 0.062 0.938 41 H 0.017 0.983 42 H 0.062 0.938 43 H 0.182 0.818 44 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 0.108 -5.164 -20.946 21.573 hybrid contribution 0.354 -0.462 0.358 0.684 sum 0.463 -5.626 -20.588 21.347 Atomic orbital electron populations 1.22168 0.94593 1.02504 1.02909 1.21679 0.95219 0.94252 0.88395 1.22331 1.01686 0.95286 1.03377 1.48252 1.53372 1.22083 1.08554 1.22741 1.01013 0.98930 0.80512 1.21341 0.95644 0.94388 0.87710 1.44005 1.64739 1.22466 1.00644 1.20822 0.96194 0.85738 0.95567 1.19308 1.11599 1.21957 0.85410 0.91106 1.24971 0.95712 1.00610 0.98321 1.70081 1.14840 1.46618 1.23651 0.86197 0.79221 0.77724 0.83538 1.20223 1.21646 1.21732 1.17898 0.79668 0.81392 0.87371 1.90892 1.53084 1.57085 1.37778 1.19833 0.99840 0.92785 0.94830 1.21200 0.98781 0.95570 0.94971 1.17137 1.03595 0.78368 0.93247 1.91593 1.93659 1.29929 1.94155 1.17750 1.06375 0.91136 0.82195 1.91574 1.90202 1.88510 1.38987 1.17113 1.02520 0.85332 0.87543 1.91593 1.87254 1.69039 1.61429 1.21508 0.99220 1.02323 0.90104 0.91446 0.91446 0.92351 0.88600 0.91948 0.91415 0.90572 0.90936 0.89361 0.93683 0.93724 0.95238 0.93772 0.98345 0.93819 0.81797 0.81600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.53 9.26 37.16 0.34 -1.19 16 2 C 0.11 1.07 2.35 -67.93 -0.16 0.91 16 3 C -0.17 -1.58 7.61 37.16 0.28 -1.29 16 4 N -0.59 -8.08 2.40 -167.26 -0.40 -8.48 16 5 C 0.09 1.62 5.05 -4.04 -0.02 1.60 16 6 C 0.14 2.70 5.73 -4.04 -0.02 2.67 16 7 N -0.60 -14.54 2.92 -181.11 -0.53 -15.07 16 8 C 0.16 3.79 9.03 59.85 0.54 4.33 16 9 C -0.25 -6.96 9.66 -15.06 -0.15 -7.10 16 10 H 0.07 1.97 7.87 -52.48 -0.41 1.56 16 11 C 0.00 0.06 5.04 -17.43 -0.09 -0.03 16 12 N -0.91 -26.00 10.77 55.49 0.60 -25.40 16 13 Si 0.90 22.04 29.58 -169.99 -5.03 17.02 16 14 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 15 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 16 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 17 C 0.55 8.03 7.30 -12.38 -0.09 7.94 16 18 O -0.51 -9.75 16.48 5.31 0.09 -9.66 16 19 C -0.07 -0.75 5.22 -104.98 -0.55 -1.30 16 20 C -0.09 -0.86 9.61 -39.12 -0.38 -1.23 16 21 C 0.10 0.95 7.29 -39.44 -0.29 0.66 16 22 F -0.12 -1.19 17.17 2.25 0.04 -1.15 16 23 C 0.05 0.46 7.32 -39.17 -0.29 0.18 16 24 F -0.11 -1.23 17.08 2.25 0.04 -1.19 16 25 C 0.10 0.88 7.30 -39.44 -0.29 0.59 16 26 F -0.11 -1.10 17.17 2.25 0.04 -1.06 16 27 C -0.11 -1.01 7.27 -39.12 -0.28 -1.29 16 28 H 0.07 0.73 6.88 -51.93 -0.36 0.37 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.56 8.14 -51.92 -0.42 0.13 16 31 H 0.10 0.79 3.87 -51.93 -0.20 0.59 16 32 H 0.06 0.57 7.43 -51.93 -0.39 0.19 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.86 6.37 -51.93 -0.33 0.53 16 35 H 0.07 1.26 6.70 -51.93 -0.35 0.91 16 36 H 0.09 1.91 7.36 -51.93 -0.38 1.53 16 37 H 0.04 0.95 8.03 -51.93 -0.42 0.53 16 38 H 0.04 0.76 5.13 -51.93 -0.27 0.49 16 39 H 0.03 0.74 7.41 -51.93 -0.38 0.36 16 40 H 0.04 1.13 7.26 -51.93 -0.38 0.75 16 41 H 0.00 -0.04 7.84 -51.93 -0.41 -0.45 16 42 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 43 H 0.16 1.57 8.06 -52.49 -0.42 1.14 16 44 H 0.17 1.29 5.71 -52.49 -0.30 0.99 16 LS Contribution 368.59 15.07 5.55 5.55 Total: -1.00 -30.81 368.59 -6.43 -37.24 By element: Atomic # 1 Polarization: 2.16 SS G_CDS: -5.40 Total: -3.24 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: -1.43 Total: 5.44 kcal Atomic # 7 Polarization: -48.62 SS G_CDS: -0.33 Total: -48.95 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.09 Total: -9.66 kcal Atomic # 9 Polarization: -3.52 SS G_CDS: 0.12 Total: -3.40 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.03 Total: 17.02 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.81 -6.43 -37.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571614756.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.574 kcal (2) G-P(sol) polarization free energy of solvation -30.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds