Wall clock time and date at job start Wed Apr 1 2020 03:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47151 * 2 1 4 4 N 1.46498 * 109.47427 * 120.00191 * 2 1 3 5 5 C 1.46505 * 119.99826 * 294.76124 * 4 2 1 6 6 C 1.52998 * 109.46995 * 270.00109 * 5 4 2 7 7 N 1.46497 * 109.47023 * 180.02562 * 6 5 4 8 8 C 1.46500 * 119.99595 * 269.99729 * 7 6 5 9 9 C 1.36932 * 120.00271 * 90.00104 * 7 6 5 10 10 H 1.08005 * 119.99949 * 21.19999 * 9 7 6 11 11 C 1.38816 * 120.00229 * 201.21001 * 9 7 6 12 12 N 1.31621 * 119.99907 * 15.79173 * 11 9 7 13 13 Si 1.86801 * 120.00273 * 195.80123 * 11 9 7 14 14 H 1.48499 * 109.46766 * 359.97438 * 13 11 9 15 15 H 1.48496 * 109.47217 * 119.99288 * 13 11 9 16 16 H 1.48498 * 109.46883 * 239.99558 * 13 11 9 17 17 C 1.34772 * 120.00265 * 114.76159 * 4 2 1 18 18 O 1.21565 * 120.00275 * 185.03235 * 17 4 2 19 19 C 1.47738 * 119.99898 * 4.75734 * 17 4 2 20 20 C 1.39629 * 120.10209 * 220.65498 * 19 17 4 21 21 C 1.38075 * 119.90100 * 179.79295 * 20 19 17 22 22 F 1.35098 * 119.95545 * 180.25209 * 21 20 19 23 23 C 1.38787 * 120.09775 * 0.48177 * 21 20 19 24 24 F 1.35093 * 119.90106 * 179.72200 * 23 21 20 25 25 C 1.38789 * 120.20446 * 359.74979 * 23 21 20 26 26 F 1.35095 * 119.95167 * 179.97438 * 25 23 21 27 27 C 1.38080 * 120.09766 * 0.02562 * 25 23 21 28 28 H 1.09001 * 109.47193 * 299.99473 * 1 2 3 29 29 H 1.08996 * 109.47574 * 59.99994 * 1 2 3 30 30 H 1.09008 * 109.46869 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47193 * 240.00527 * 2 1 3 32 32 H 1.08991 * 109.47478 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.46918 * 300.00336 * 3 2 1 34 34 H 1.08996 * 109.46937 * 59.99796 * 3 2 1 35 35 H 1.08996 * 109.46793 * 29.99479 * 5 4 2 36 36 H 1.08994 * 109.46865 * 150.00263 * 5 4 2 37 37 H 1.09005 * 109.47077 * 300.00140 * 6 5 4 38 38 H 1.09005 * 109.47386 * 59.99633 * 6 5 4 39 39 H 1.09002 * 109.47255 * 94.63795 * 8 7 6 40 40 H 1.09004 * 109.47263 * 214.63412 * 8 7 6 41 41 H 1.09003 * 109.47462 * 334.63098 * 8 7 6 42 42 H 0.96992 * 120.00304 * 180.02562 * 12 11 9 43 43 H 1.08002 * 120.04868 * 359.97438 * 20 19 17 44 44 H 1.07999 * 120.04848 * 179.97438 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.7616 -0.1268 2.5237 6 6 2.9071 0.8111 2.9097 7 7 2.6506 1.3745 4.2375 8 6 1.9053 2.6288 4.3694 9 6 3.1075 0.7287 5.3552 10 1 3.9215 0.0233 5.2765 11 6 2.5243 0.9806 6.5895 12 7 1.3559 1.5831 6.6546 13 14 3.3978 0.4647 8.1580 14 1 4.6862 -0.1891 7.8149 15 1 3.6579 1.6623 8.9966 16 1 2.5434 -0.4897 8.9093 17 6 2.7039 -1.8446 1.0753 18 8 3.0298 -2.4650 2.0686 19 6 3.0542 -2.3589 -0.2647 20 6 2.9556 -3.7246 -0.5384 21 6 3.2799 -4.2001 -1.7935 22 9 3.1801 -5.5206 -2.0611 23 6 3.7128 -3.3243 -2.7792 24 9 4.0345 -3.7947 -4.0041 25 6 3.8170 -1.9667 -2.5103 26 9 4.2394 -1.1188 -3.4734 27 6 3.4904 -1.4815 -1.2595 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0278 0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 3.1299 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9563 0.8899 35 1 0.8254 0.4312 2.5065 36 1 1.6907 -0.9333 3.2534 37 1 3.8434 0.2532 2.9268 38 1 2.9781 1.6176 2.1799 39 1 0.8512 2.4091 4.5388 40 1 2.2978 3.1978 5.2122 41 1 2.0124 3.2130 3.4554 42 1 0.9485 1.7594 7.5170 43 1 2.6234 -4.4075 0.2295 44 1 3.5721 -0.4250 -1.0510 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571614756.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:40 Heat of formation + Delta-G solvation = -117.291628 kcal Electronic energy + Delta-G solvation = -30904.252717 eV Core-core repulsion = 26215.367345 eV Total energy + Delta-G solvation = -4688.885372 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -50.97363 -50.35543 -49.65269 -41.83812 -39.39824 -38.19199 -37.20569 -33.78642 -32.64221 -32.33414 -31.89687 -29.78223 -28.10040 -27.87298 -26.07605 -24.90840 -24.41897 -22.87325 -22.35933 -20.73524 -19.47106 -19.12459 -18.98117 -18.76958 -18.01944 -17.75420 -17.18237 -17.13596 -16.75829 -16.63941 -16.28790 -16.12360 -15.96274 -15.61559 -15.57917 -15.28563 -15.13205 -14.93696 -14.44302 -14.19767 -13.98160 -13.83485 -13.80144 -13.29606 -13.16906 -13.13447 -12.93045 -12.80301 -12.79577 -12.72815 -12.38856 -12.15998 -12.02591 -11.98381 -11.81911 -11.41734 -11.14130 -10.67239 -10.23308 -10.13983 -9.83663 -8.77999 -7.85400 -5.30321 -0.87703 -0.51757 1.27830 1.43905 1.46117 1.56228 1.69769 1.97157 2.13741 2.51408 2.87719 2.91349 3.02354 3.15308 3.28831 3.58785 3.74213 3.85120 3.97789 4.12551 4.14805 4.21946 4.29612 4.39638 4.48706 4.57618 4.63363 4.67988 4.75478 4.82255 4.86781 4.95757 5.00085 5.04308 5.14365 5.25171 5.32884 5.39046 5.45573 5.53751 5.64877 5.73506 6.30202 6.34704 6.97830 7.15211 7.86809 8.26597 9.17658 Molecular weight = 344.15amu Principal moments of inertia in cm(-1) A = 0.016640 B = 0.002850 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.310464 B = 9823.362158 C =10676.229789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.104 3.896 3 C -0.170 4.170 4 N -0.585 5.585 5 C 0.113 3.887 6 C 0.143 3.857 7 N -0.613 5.613 8 C 0.175 3.825 9 C -0.263 4.263 10 H 0.059 0.941 11 C -0.047 4.047 12 N -0.931 5.931 13 Si 0.961 3.039 14 H -0.273 1.273 15 H -0.286 1.286 16 H -0.293 1.293 17 C 0.551 3.449 18 O -0.567 6.567 19 C -0.075 4.075 20 C -0.079 4.079 21 C 0.100 3.900 22 F -0.118 7.118 23 C 0.052 3.948 24 F -0.118 7.118 25 C 0.106 3.894 26 F -0.112 7.112 27 C -0.094 4.094 28 H 0.048 0.952 29 H 0.096 0.904 30 H 0.053 0.947 31 H 0.121 0.879 32 H 0.066 0.934 33 H 0.099 0.901 34 H 0.055 0.945 35 H 0.077 0.923 36 H 0.042 0.958 37 H 0.027 0.973 38 H 0.079 0.921 39 H 0.007 0.993 40 H 0.015 0.985 41 H 0.040 0.960 42 H 0.249 0.751 43 H 0.164 0.836 44 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.373 -4.280 -24.278 24.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.002 3.998 3 C -0.227 4.227 4 N -0.317 5.317 5 C -0.012 4.012 6 C 0.016 3.984 7 N -0.336 5.336 8 C 0.030 3.970 9 C -0.393 4.393 10 H 0.077 0.923 11 C -0.242 4.242 12 N -0.578 5.578 13 Si 0.789 3.211 14 H -0.198 1.198 15 H -0.212 1.212 16 H -0.220 1.220 17 C 0.339 3.661 18 O -0.446 6.446 19 C -0.079 4.079 20 C -0.099 4.099 21 C 0.079 3.921 22 F -0.097 7.097 23 C 0.030 3.970 24 F -0.096 7.096 25 C 0.085 3.915 26 F -0.090 7.090 27 C -0.113 4.113 28 H 0.068 0.932 29 H 0.115 0.885 30 H 0.072 0.928 31 H 0.138 0.862 32 H 0.085 0.915 33 H 0.118 0.882 34 H 0.074 0.926 35 H 0.095 0.905 36 H 0.060 0.940 37 H 0.045 0.955 38 H 0.097 0.903 39 H 0.026 0.974 40 H 0.034 0.966 41 H 0.058 0.942 42 H 0.058 0.942 43 H 0.182 0.818 44 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 0.471 -4.540 -23.713 24.148 hybrid contribution 0.255 -0.689 1.034 1.269 sum 0.726 -5.229 -22.678 23.285 Atomic orbital electron populations 1.22176 0.93937 1.02453 1.03469 1.22034 0.95785 0.94779 0.87169 1.22350 1.01998 0.94398 1.03990 1.48201 1.53021 1.22157 1.08298 1.22047 1.00314 0.96978 0.81844 1.21404 0.95173 0.95434 0.86430 1.44177 1.64860 1.23061 1.01551 1.20604 0.94444 0.85518 0.96387 1.19455 1.11323 1.21598 0.86952 0.92284 1.25626 0.96451 1.01338 1.00815 1.70209 1.15828 1.47884 1.23858 0.85303 0.78242 0.77278 0.80249 1.19774 1.21231 1.21965 1.18374 0.78566 0.80950 0.88195 1.90869 1.55144 1.58633 1.39954 1.19391 1.01846 0.93332 0.93292 1.21161 0.98281 0.95309 0.95120 1.17009 1.03800 0.78242 0.93042 1.91589 1.93718 1.30218 1.94140 1.17838 1.05819 0.91431 0.81886 1.91571 1.90185 1.88629 1.39253 1.16938 1.02191 0.84922 0.87435 1.91611 1.87182 1.68902 1.61326 1.21522 0.97781 1.02760 0.89253 0.93244 0.88491 0.92776 0.86207 0.91522 0.88222 0.92553 0.90473 0.93969 0.95480 0.90292 0.97448 0.96595 0.94199 0.94186 0.81816 0.79816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.64 9.26 71.98 0.67 -1.97 16 2 C 0.10 1.77 2.35 44.99 0.11 1.88 16 3 C -0.17 -2.55 7.61 71.98 0.55 -2.00 16 4 N -0.59 -15.60 2.40 -801.35 -1.92 -17.52 16 5 C 0.11 4.08 5.05 86.38 0.44 4.52 16 6 C 0.14 5.58 5.73 86.38 0.50 6.07 16 7 N -0.61 -30.30 2.92 -726.91 -2.13 -32.43 16 8 C 0.18 8.23 9.03 127.77 1.15 9.38 16 9 C -0.26 -14.82 9.66 84.04 0.81 -14.01 16 10 H 0.06 3.40 7.87 -2.91 -0.02 3.37 16 11 C -0.05 -2.65 5.04 84.86 0.43 -2.23 16 12 N -0.93 -54.69 10.77 21.65 0.23 -54.45 16 13 Si 0.96 46.22 29.58 68.60 2.03 48.25 16 14 H -0.27 -12.79 7.11 99.48 0.71 -12.09 16 15 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 16 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 17 C 0.55 15.96 7.30 86.76 0.63 16.59 16 18 O -0.57 -22.36 16.48 -3.92 -0.06 -22.43 16 19 C -0.07 -1.51 5.22 -20.09 -0.10 -1.61 16 20 C -0.08 -1.49 9.61 22.57 0.22 -1.27 16 21 C 0.10 1.77 7.29 22.36 0.16 1.93 16 22 F -0.12 -2.29 17.17 44.97 0.77 -1.51 16 23 C 0.05 0.89 7.32 22.53 0.16 1.05 16 24 F -0.12 -2.25 17.08 44.97 0.77 -1.48 16 25 C 0.11 1.60 7.30 22.36 0.16 1.76 16 26 F -0.11 -1.74 17.17 44.97 0.77 -0.96 16 27 C -0.09 -1.40 7.27 22.57 0.16 -1.24 16 28 H 0.05 0.99 6.88 -2.39 -0.02 0.98 16 29 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 31 H 0.12 1.51 3.87 -2.39 -0.01 1.50 16 32 H 0.07 0.96 7.43 -2.39 -0.02 0.94 16 33 H 0.10 0.92 8.14 -2.38 -0.02 0.90 16 34 H 0.06 1.10 6.37 -2.39 -0.02 1.09 16 35 H 0.08 2.71 6.70 -2.39 -0.02 2.69 16 36 H 0.04 1.92 7.36 -2.39 -0.02 1.90 16 37 H 0.03 1.15 8.03 -2.38 -0.02 1.13 16 38 H 0.08 2.54 5.13 -2.38 -0.01 2.52 16 39 H 0.01 0.37 7.41 -2.39 -0.02 0.35 16 40 H 0.02 0.80 7.26 -2.38 -0.02 0.78 16 41 H 0.04 1.51 7.84 -2.39 -0.02 1.49 16 42 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 43 H 0.16 3.09 8.06 -2.91 -0.02 3.06 16 44 H 0.18 2.10 5.71 -2.91 -0.02 2.09 16 Total: -1.00 -69.34 368.59 7.56 -61.78 By element: Atomic # 1 Polarization: 0.84 SS G_CDS: 1.05 Total: 1.89 kcal Atomic # 6 Polarization: 12.82 SS G_CDS: 6.04 Total: 18.87 kcal Atomic # 7 Polarization: -100.59 SS G_CDS: -3.81 Total: -104.40 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: -0.06 Total: -22.43 kcal Atomic # 9 Polarization: -6.27 SS G_CDS: 2.31 Total: -3.96 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.25 kcal Total: -69.34 7.56 -61.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571614756.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.516 kcal (2) G-P(sol) polarization free energy of solvation -69.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds