Wall clock time and date at job start Wed Apr 1 2020 03:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50706 * 120.00302 * 2 1 4 4 H 1.09000 * 109.46958 * 4.99415 * 3 2 1 5 5 N 1.46498 * 109.46756 * 245.00144 * 3 2 1 6 6 C 1.39890 * 120.00446 * 84.99721 * 5 3 2 7 7 C 1.38909 * 120.00350 * 359.72361 * 6 5 3 8 8 C 1.38050 * 120.01176 * 179.72082 * 7 6 5 9 9 C 1.38860 * 119.99354 * 0.56633 * 8 7 6 10 10 C 1.38849 * 119.99052 * 359.70413 * 9 8 7 11 11 C 1.38048 * 120.04270 * 0.02562 * 10 9 8 12 12 C 1.50673 * 119.83580 * 179.97438 * 10 9 8 13 13 C 1.52902 * 109.53490 * 325.99349 * 12 10 9 14 14 C 1.50494 * 109.90572 * 48.67912 * 13 12 10 15 15 O 1.21300 * 119.61926 * 144.77311 * 14 13 12 16 16 N 1.34562 * 120.76044 * 324.80040 * 14 13 12 17 17 C 1.46502 * 119.78409 * 180.78418 * 16 14 13 18 18 C 1.52996 * 109.47292 * 89.99569 * 17 16 14 19 19 C 1.50697 * 109.46877 * 180.02562 * 18 17 16 20 20 H 1.07995 * 120.00484 * 359.97438 * 19 18 17 21 21 C 1.37884 * 119.99830 * 179.97438 * 19 18 17 22 22 N 1.31514 * 120.00142 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99867 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47284 * 60.00139 * 23 21 19 25 25 H 1.48505 * 109.47025 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47171 * 299.99984 * 23 21 19 27 27 C 1.50694 * 109.47477 * 124.99972 * 3 2 1 28 28 O 1.20818 * 120.00035 * 120.00043 * 27 3 2 29 29 O 1.34235 * 119.99871 * 300.00043 * 27 3 2 30 30 H 1.08002 * 120.00352 * 180.02562 * 1 2 3 31 31 H 1.08005 * 119.99880 * 359.72812 * 1 2 3 32 32 H 1.07998 * 120.00195 * 179.97438 * 2 1 3 33 33 H 0.97008 * 119.99792 * 264.99379 * 5 3 2 34 34 H 1.07996 * 119.99567 * 359.97438 * 7 6 5 35 35 H 1.07996 * 120.00444 * 180.25805 * 8 7 6 36 36 H 1.08001 * 120.01909 * 180.02562 * 11 10 9 37 37 H 1.08990 * 109.46753 * 86.01710 * 12 10 9 38 38 H 1.09004 * 109.46161 * 205.99116 * 12 10 9 39 39 H 1.09004 * 109.40183 * 168.81358 * 13 12 10 40 40 H 1.08999 * 109.40233 * 288.54510 * 13 12 10 41 41 H 1.09006 * 109.46958 * 210.00102 * 17 16 14 42 42 H 1.08999 * 109.46808 * 329.99411 * 17 16 14 43 43 H 1.09001 * 109.47118 * 299.99961 * 18 17 16 44 44 H 1.08999 * 109.47323 * 60.00158 * 18 17 16 45 45 H 0.96991 * 120.00268 * 179.97438 * 22 21 19 46 46 H 0.96698 * 116.99718 * 180.02562 * 29 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3586 2.1317 0.0895 5 7 2.8132 1.4361 -1.2518 6 6 2.1870 1.9518 -2.3915 7 6 0.8527 2.3345 -2.3379 8 6 0.2363 2.8489 -3.4609 9 6 0.9468 2.9728 -4.6475 10 6 2.2789 2.5850 -4.7025 11 6 2.8975 2.0757 -3.5784 12 6 3.0463 2.7204 -5.9921 13 6 2.1092 2.4684 -7.1737 14 6 0.8496 3.2756 -7.0099 15 8 0.3040 3.7404 -7.9884 16 7 0.3221 3.4881 -5.7904 17 6 -0.9143 4.2626 -5.6572 18 6 -2.1172 3.3203 -5.7339 19 6 -3.3890 4.1171 -5.5975 20 1 -3.3439 5.1884 -5.4686 21 6 -4.6103 3.4784 -5.6374 22 7 -4.6653 2.1738 -5.7939 23 14 -6.1867 4.4660 -5.4676 24 1 -6.2671 5.4627 -6.5655 25 1 -7.3543 3.5514 -5.5422 26 1 -6.1920 5.1690 -4.1596 27 6 3.0205 1.3327 1.1638 28 8 4.2069 1.4498 0.9677 29 8 2.5547 1.2272 2.4183 30 1 -0.5401 -0.9353 0.0004 31 1 -0.5400 0.9354 0.0044 32 1 1.8500 -0.9353 0.0004 33 1 3.7438 1.1651 -1.2904 34 1 0.2987 2.2334 -1.4164 35 1 -0.7999 3.1502 -3.4179 36 1 3.9338 1.7746 -3.6215 37 1 3.4599 3.7261 -6.0647 38 1 3.8572 1.9922 -6.0103 39 1 2.6072 2.7582 -8.0990 40 1 1.8571 1.4088 -7.2164 41 1 -0.9179 4.7791 -4.6973 42 1 -0.9736 4.9938 -6.4633 43 1 -2.1136 2.8039 -6.6938 44 1 -2.0579 2.5891 -4.9277 45 1 -5.5244 1.7244 -5.8215 46 1 3.2067 1.2504 3.1320 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588702720.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:21:35 Heat of formation + Delta-G solvation = -74.753672 kcal Electronic energy + Delta-G solvation = -29766.672625 eV Core-core repulsion = 25621.488578 eV Total energy + Delta-G solvation = -4145.184048 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.99161 -40.63506 -38.78697 -37.01302 -36.43452 -35.22305 -34.39123 -32.98063 -32.65045 -30.23084 -29.59208 -28.89349 -26.61604 -25.33333 -24.22197 -22.58503 -22.19582 -21.86872 -20.79779 -20.26372 -18.77555 -18.48194 -17.87754 -17.20760 -16.62264 -16.35604 -16.22911 -15.96439 -15.47132 -15.20356 -14.57838 -14.43653 -14.41232 -14.11303 -13.76455 -13.72463 -13.45306 -13.19100 -12.94282 -12.80837 -12.45585 -12.34287 -12.28857 -12.04431 -11.97212 -11.59864 -11.39071 -11.34673 -11.14478 -10.92519 -10.86927 -10.68058 -10.48488 -9.95130 -9.86069 -9.77003 -9.49310 -9.12365 -8.70318 -8.62225 -8.36113 -6.90579 -6.01606 -4.05221 1.45836 1.59901 1.63365 1.91550 2.32340 3.02862 3.33078 3.35193 3.37938 3.42476 3.51342 4.01683 4.42543 4.45493 4.45924 4.66771 4.73961 4.79565 4.88490 5.08163 5.10579 5.23446 5.34362 5.35983 5.38443 5.54992 5.62455 5.76731 5.83608 5.90535 5.98466 6.07725 6.12712 6.20814 6.25861 6.29669 6.34121 6.46077 6.55276 6.75726 6.79442 7.01838 7.21871 7.38412 7.58602 7.61396 7.70221 7.95921 7.97991 8.33107 8.53023 9.00811 9.58639 11.09569 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.009378 B = 0.003225 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2984.933298 B = 8681.271786 C =11105.178426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.183 4.183 3 C 0.198 3.802 4 H 0.120 0.880 5 N -0.735 5.735 6 C 0.187 3.813 7 C -0.164 4.164 8 C -0.095 4.095 9 C 0.126 3.874 10 C -0.086 4.086 11 C -0.155 4.155 12 C -0.073 4.073 13 C -0.138 4.138 14 C 0.511 3.489 15 O -0.528 6.528 16 N -0.544 5.544 17 C 0.108 3.892 18 C 0.013 3.987 19 C -0.523 4.523 20 H 0.057 0.943 21 C 0.061 3.939 22 N -0.892 5.892 23 Si 0.894 3.106 24 H -0.276 1.276 25 H -0.287 1.287 26 H -0.276 1.276 27 C 0.483 3.517 28 O -0.510 6.510 29 O -0.507 6.507 30 H 0.109 0.891 31 H 0.105 0.895 32 H 0.115 0.885 33 H 0.406 0.594 34 H 0.122 0.878 35 H 0.143 0.857 36 H 0.123 0.877 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.102 0.898 40 H 0.099 0.901 41 H 0.069 0.931 42 H 0.079 0.921 43 H 0.021 0.979 44 H 0.021 0.979 45 H 0.262 0.738 46 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.199 -4.563 14.149 23.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.203 4.203 3 C 0.090 3.910 4 H 0.137 0.863 5 N -0.370 5.370 6 C 0.087 3.913 7 C -0.187 4.187 8 C -0.116 4.116 9 C 0.030 3.970 10 C -0.089 4.089 11 C -0.177 4.177 12 C -0.110 4.110 13 C -0.177 4.177 14 C 0.300 3.700 15 O -0.404 6.404 16 N -0.267 5.267 17 C -0.012 4.012 18 C -0.024 4.024 19 C -0.561 4.561 20 H 0.075 0.925 21 C -0.141 4.141 22 N -0.530 5.530 23 Si 0.722 3.278 24 H -0.202 1.202 25 H -0.213 1.213 26 H -0.202 1.202 27 C 0.324 3.676 28 O -0.397 6.397 29 O -0.318 6.318 30 H 0.127 0.873 31 H 0.123 0.877 32 H 0.133 0.867 33 H 0.243 0.757 34 H 0.140 0.860 35 H 0.161 0.839 36 H 0.141 0.859 37 H 0.098 0.902 38 H 0.104 0.896 39 H 0.120 0.880 40 H 0.117 0.883 41 H 0.088 0.912 42 H 0.097 0.903 43 H 0.040 0.960 44 H 0.039 0.961 45 H 0.071 0.929 46 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 17.662 -4.375 13.281 22.527 hybrid contribution -0.225 0.200 0.669 0.734 sum 17.437 -4.175 13.951 22.718 Atomic orbital electron populations 1.24033 0.95370 1.03072 0.95497 1.22895 0.96277 0.96945 1.04172 1.19203 0.91491 0.98786 0.81531 0.86278 1.44174 1.13992 1.72544 1.06248 1.17524 0.92087 0.95534 0.86187 1.20510 0.93223 1.05801 0.99150 1.20938 1.00536 0.99133 0.90980 1.17578 0.91214 1.00446 0.87783 1.19211 0.92172 1.01996 0.95514 1.20062 0.99687 1.07047 0.90931 1.20377 0.97223 1.03038 0.90351 1.21678 0.94011 1.01779 1.00281 1.20533 0.86081 0.80801 0.82581 1.90731 1.62477 1.49746 1.37470 1.45783 1.25732 1.50689 1.04450 1.22083 0.82291 0.95145 1.01670 1.19412 0.90424 0.94596 0.98016 1.21031 0.90694 0.93832 1.50577 0.92517 1.24984 0.99171 0.94875 0.95100 1.69961 1.25434 1.07963 1.49677 0.86628 0.82627 0.79877 0.78694 1.20166 1.21281 1.20179 1.23405 0.88362 0.71560 0.84248 1.90725 1.18098 1.45234 1.85654 1.84527 1.45854 1.84720 1.16714 0.87281 0.87717 0.86655 0.75653 0.85974 0.83939 0.85878 0.90202 0.89642 0.87969 0.88312 0.91219 0.90292 0.96013 0.96050 0.92882 0.72756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 13.76 29.02 0.40 -0.75 16 2 C -0.18 -1.51 8.93 -36.02 -0.32 -1.83 16 3 C 0.20 1.71 2.60 -70.24 -0.18 1.52 16 4 H 0.12 0.97 6.15 -51.93 -0.32 0.65 16 5 N -0.73 -7.22 5.12 -54.37 -0.28 -7.49 16 6 C 0.19 2.20 6.63 -83.69 -0.56 1.64 16 7 C -0.16 -2.13 9.15 -39.40 -0.36 -2.49 16 8 C -0.10 -1.50 8.83 -39.42 -0.35 -1.85 16 9 C 0.13 2.07 6.32 -83.64 -0.53 1.54 16 10 C -0.09 -1.14 5.65 -104.48 -0.59 -1.73 16 11 C -0.15 -1.80 9.53 -39.41 -0.38 -2.17 16 12 C -0.07 -0.80 5.99 -27.95 -0.17 -0.97 16 13 C -0.14 -1.83 6.07 -28.03 -0.17 -2.00 16 14 C 0.51 9.69 7.46 -11.18 -0.08 9.61 16 15 O -0.53 -12.13 16.60 5.54 0.09 -12.04 16 16 N -0.54 -10.39 2.70 -113.56 -0.31 -10.70 16 17 C 0.11 2.34 4.62 -4.04 -0.02 2.32 16 18 C 0.01 0.35 5.10 -27.89 -0.14 0.20 16 19 C -0.52 -14.69 9.11 -34.44 -0.31 -15.00 16 20 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 21 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 22 N -0.89 -26.74 13.29 55.43 0.74 -26.00 16 23 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 27 C 0.48 4.13 7.68 36.00 0.28 4.41 16 28 O -0.51 -5.64 16.59 -18.74 -0.31 -5.95 16 29 O -0.51 -3.09 13.34 -39.27 -0.52 -3.61 16 30 H 0.11 0.79 8.06 -52.49 -0.42 0.37 16 31 H 0.10 0.81 6.97 -52.48 -0.37 0.45 16 32 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 33 H 0.41 3.82 7.81 -40.82 -0.32 3.51 16 34 H 0.12 1.36 4.74 -52.49 -0.25 1.11 16 35 H 0.14 2.50 5.71 -52.49 -0.30 2.20 16 36 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 37 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.09 0.71 8.06 -51.93 -0.42 0.29 16 39 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.07 1.38 7.12 -51.93 -0.37 1.01 16 42 H 0.08 1.81 7.37 -51.93 -0.38 1.42 16 43 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.02 0.57 6.86 -51.93 -0.36 0.21 16 45 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 46 H 0.41 0.77 9.10 45.56 0.41 1.19 16 LS Contribution 384.07 15.07 5.79 5.79 Total: -1.00 -35.55 384.07 -8.57 -44.12 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -5.17 Total: 5.28 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: -3.58 Total: -5.93 kcal Atomic # 7 Polarization: -44.35 SS G_CDS: 0.15 Total: -44.19 kcal Atomic # 8 Polarization: -20.86 SS G_CDS: -0.74 Total: -21.60 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.55 -8.57 -44.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588702720.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.636 kcal (2) G-P(sol) polarization free energy of solvation -35.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds