Wall clock time and date at job start Wed Apr 1 2020 03:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50706 * 120.00302 * 2 1 4 4 H 1.09000 * 109.46958 * 4.99415 * 3 2 1 5 5 N 1.46498 * 109.46756 * 245.00144 * 3 2 1 6 6 C 1.39890 * 120.00446 * 84.99721 * 5 3 2 7 7 C 1.38909 * 120.00350 * 359.72361 * 6 5 3 8 8 C 1.38050 * 120.01176 * 179.72082 * 7 6 5 9 9 C 1.38860 * 119.99354 * 0.56633 * 8 7 6 10 10 C 1.38849 * 119.99052 * 359.70413 * 9 8 7 11 11 C 1.38048 * 120.04270 * 0.02562 * 10 9 8 12 12 C 1.50673 * 119.83580 * 179.97438 * 10 9 8 13 13 C 1.52902 * 109.53490 * 325.99349 * 12 10 9 14 14 C 1.50494 * 109.90572 * 48.67912 * 13 12 10 15 15 O 1.21300 * 119.61926 * 144.77311 * 14 13 12 16 16 N 1.34562 * 120.76044 * 324.80040 * 14 13 12 17 17 C 1.46502 * 119.78409 * 180.78418 * 16 14 13 18 18 C 1.52996 * 109.47292 * 89.99569 * 17 16 14 19 19 C 1.50697 * 109.46877 * 180.02562 * 18 17 16 20 20 H 1.07995 * 120.00484 * 359.97438 * 19 18 17 21 21 C 1.37884 * 119.99830 * 179.97438 * 19 18 17 22 22 N 1.31514 * 120.00142 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99867 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47284 * 60.00139 * 23 21 19 25 25 H 1.48505 * 109.47025 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47171 * 299.99984 * 23 21 19 27 27 C 1.50694 * 109.47477 * 124.99972 * 3 2 1 28 28 O 1.20818 * 120.00035 * 120.00043 * 27 3 2 29 29 O 1.34235 * 119.99871 * 300.00043 * 27 3 2 30 30 H 1.08002 * 120.00352 * 180.02562 * 1 2 3 31 31 H 1.08005 * 119.99880 * 359.72812 * 1 2 3 32 32 H 1.07998 * 120.00195 * 179.97438 * 2 1 3 33 33 H 0.97008 * 119.99792 * 264.99379 * 5 3 2 34 34 H 1.07996 * 119.99567 * 359.97438 * 7 6 5 35 35 H 1.07996 * 120.00444 * 180.25805 * 8 7 6 36 36 H 1.08001 * 120.01909 * 180.02562 * 11 10 9 37 37 H 1.08990 * 109.46753 * 86.01710 * 12 10 9 38 38 H 1.09004 * 109.46161 * 205.99116 * 12 10 9 39 39 H 1.09004 * 109.40183 * 168.81358 * 13 12 10 40 40 H 1.08999 * 109.40233 * 288.54510 * 13 12 10 41 41 H 1.09006 * 109.46958 * 210.00102 * 17 16 14 42 42 H 1.08999 * 109.46808 * 329.99411 * 17 16 14 43 43 H 1.09001 * 109.47118 * 299.99961 * 18 17 16 44 44 H 1.08999 * 109.47323 * 60.00158 * 18 17 16 45 45 H 0.96991 * 120.00268 * 179.97438 * 22 21 19 46 46 H 0.96698 * 116.99718 * 180.02562 * 29 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3586 2.1317 0.0895 5 7 2.8132 1.4361 -1.2518 6 6 2.1870 1.9518 -2.3915 7 6 0.8527 2.3345 -2.3379 8 6 0.2363 2.8489 -3.4609 9 6 0.9468 2.9728 -4.6475 10 6 2.2789 2.5850 -4.7025 11 6 2.8975 2.0757 -3.5784 12 6 3.0463 2.7204 -5.9921 13 6 2.1092 2.4684 -7.1737 14 6 0.8496 3.2756 -7.0099 15 8 0.3040 3.7404 -7.9884 16 7 0.3221 3.4881 -5.7904 17 6 -0.9143 4.2626 -5.6572 18 6 -2.1172 3.3203 -5.7339 19 6 -3.3890 4.1171 -5.5975 20 1 -3.3439 5.1884 -5.4686 21 6 -4.6103 3.4784 -5.6374 22 7 -4.6653 2.1738 -5.7939 23 14 -6.1867 4.4660 -5.4676 24 1 -6.2671 5.4627 -6.5655 25 1 -7.3543 3.5514 -5.5422 26 1 -6.1920 5.1690 -4.1596 27 6 3.0205 1.3327 1.1638 28 8 4.2069 1.4498 0.9677 29 8 2.5547 1.2272 2.4183 30 1 -0.5401 -0.9353 0.0004 31 1 -0.5400 0.9354 0.0044 32 1 1.8500 -0.9353 0.0004 33 1 3.7438 1.1651 -1.2904 34 1 0.2987 2.2334 -1.4164 35 1 -0.7999 3.1502 -3.4179 36 1 3.9338 1.7746 -3.6215 37 1 3.4599 3.7261 -6.0647 38 1 3.8572 1.9922 -6.0103 39 1 2.6072 2.7582 -8.0990 40 1 1.8571 1.4088 -7.2164 41 1 -0.9179 4.7791 -4.6973 42 1 -0.9736 4.9938 -6.4633 43 1 -2.1136 2.8039 -6.6938 44 1 -2.0579 2.5891 -4.9277 45 1 -5.5244 1.7244 -5.8215 46 1 3.2067 1.2504 3.1320 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588702720.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:21:34 Heat of formation + Delta-G solvation = -98.451123 kcal Electronic energy + Delta-G solvation = -29767.700224 eV Core-core repulsion = 25621.488578 eV Total energy + Delta-G solvation = -4146.211646 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.06521 -41.51882 -39.93149 -37.99673 -37.15401 -36.65477 -35.49233 -34.83559 -33.64064 -31.82622 -30.91470 -29.87481 -27.58061 -27.11408 -25.40353 -23.84680 -23.35165 -22.93463 -22.14846 -21.11641 -19.68754 -19.40495 -18.78375 -18.69976 -18.17266 -17.62967 -17.07642 -16.86685 -16.66210 -16.60551 -16.23520 -15.73322 -15.22549 -15.16338 -14.93338 -14.78176 -14.59232 -14.45074 -14.14036 -14.10186 -13.89639 -13.59535 -13.48563 -13.20557 -12.87182 -12.83054 -12.71984 -12.64324 -12.45906 -12.33450 -12.08375 -11.93837 -11.88015 -11.70403 -11.47005 -11.33961 -10.80803 -10.58970 -10.50780 -10.00570 -9.66099 -8.23307 -8.01951 -6.35789 0.40948 0.48392 0.97934 1.24581 1.39054 1.43379 1.50846 1.63898 1.70435 1.98904 2.41001 2.74724 2.92534 3.10388 3.50293 3.72015 3.76795 3.85004 3.89060 4.10777 4.14745 4.24159 4.27236 4.39373 4.45247 4.47487 4.50237 4.56704 4.81045 4.83942 4.92677 4.96744 5.02828 5.04972 5.14798 5.27081 5.41355 5.43360 5.47319 5.49087 5.60262 5.63148 5.70612 5.74973 5.84493 6.14303 6.25750 6.54076 6.73030 6.78126 6.91378 7.08435 7.33511 8.89181 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.009378 B = 0.003225 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2984.933298 B = 8681.271786 C =11105.178426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.184 4.184 3 C 0.192 3.808 4 H 0.124 0.876 5 N -0.726 5.726 6 C 0.200 3.800 7 C -0.169 4.169 8 C -0.112 4.112 9 C 0.085 3.915 10 C -0.077 4.077 11 C -0.148 4.148 12 C -0.067 4.067 13 C -0.128 4.128 14 C 0.495 3.505 15 O -0.585 6.585 16 N -0.548 5.548 17 C 0.125 3.875 18 C 0.030 3.970 19 C -0.546 4.546 20 H 0.064 0.936 21 C 0.004 3.996 22 N -0.930 5.930 23 Si 0.969 3.031 24 H -0.272 1.272 25 H -0.281 1.281 26 H -0.259 1.259 27 C 0.493 3.507 28 O -0.536 6.536 29 O -0.502 6.502 30 H 0.116 0.884 31 H 0.105 0.895 32 H 0.122 0.878 33 H 0.412 0.588 34 H 0.136 0.864 35 H 0.113 0.887 36 H 0.160 0.840 37 H 0.091 0.909 38 H 0.129 0.871 39 H 0.123 0.877 40 H 0.108 0.892 41 H 0.085 0.915 42 H 0.059 0.941 43 H -0.027 1.027 44 H 0.006 0.994 45 H 0.265 0.735 46 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.318 -4.921 16.070 26.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.204 4.204 3 C 0.085 3.915 4 H 0.142 0.858 5 N -0.360 5.360 6 C 0.098 3.902 7 C -0.191 4.191 8 C -0.132 4.132 9 C -0.010 4.010 10 C -0.080 4.080 11 C -0.170 4.170 12 C -0.103 4.103 13 C -0.167 4.167 14 C 0.287 3.713 15 O -0.466 6.466 16 N -0.271 5.271 17 C 0.004 3.996 18 C -0.007 4.007 19 C -0.584 4.584 20 H 0.082 0.918 21 C -0.194 4.194 22 N -0.570 5.570 23 Si 0.793 3.207 24 H -0.197 1.197 25 H -0.207 1.207 26 H -0.184 1.184 27 C 0.335 3.665 28 O -0.426 6.426 29 O -0.315 6.315 30 H 0.134 0.866 31 H 0.123 0.877 32 H 0.140 0.860 33 H 0.250 0.750 34 H 0.154 0.846 35 H 0.131 0.869 36 H 0.177 0.823 37 H 0.109 0.891 38 H 0.147 0.853 39 H 0.141 0.859 40 H 0.126 0.874 41 H 0.103 0.897 42 H 0.078 0.922 43 H -0.009 1.009 44 H 0.024 0.976 45 H 0.074 0.926 46 H 0.295 0.705 Dipole moment (debyes) X Y Z Total from point charges 19.832 -4.757 15.295 25.493 hybrid contribution -0.840 0.224 0.244 0.903 sum 18.992 -4.533 15.540 24.955 Atomic orbital electron populations 1.24174 0.95580 1.03511 0.95264 1.22900 0.96230 0.96933 1.04330 1.19309 0.91641 0.99260 0.81306 0.85817 1.44176 1.14228 1.71530 1.06050 1.17604 0.91507 0.94012 0.87036 1.20571 0.94121 1.05707 0.98727 1.20799 0.99496 1.00680 0.92272 1.17865 0.92944 1.03304 0.86854 1.19501 0.90802 1.00460 0.97247 1.20411 1.01107 1.05629 0.89854 1.20499 0.97125 1.05076 0.87635 1.21737 0.91485 1.00897 1.02574 1.21738 0.87497 0.80494 0.81590 1.90688 1.64530 1.52335 1.39030 1.45721 1.24787 1.50621 1.05930 1.21576 0.82448 0.94057 1.01554 1.19152 0.92442 0.94631 0.94518 1.21469 0.91814 0.94450 1.50716 0.91768 1.25980 1.03117 0.95987 0.94339 1.70107 1.26533 1.09871 1.50445 0.85446 0.77631 0.78260 0.79378 1.19667 1.20657 1.18360 1.23215 0.87642 0.70845 0.84813 1.90722 1.19058 1.46717 1.86138 1.84483 1.46544 1.83975 1.16489 0.86611 0.87713 0.86003 0.74965 0.84594 0.86934 0.82284 0.89092 0.85326 0.85902 0.87375 0.89692 0.92214 1.00886 0.97557 0.92649 0.70453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 13.76 67.79 0.93 -1.25 16 2 C -0.18 -2.66 8.93 25.65 0.23 -2.43 16 3 C 0.19 2.89 2.60 43.50 0.11 3.00 16 4 H 0.12 1.77 6.15 -2.39 -0.01 1.76 16 5 N -0.73 -12.19 5.12 -325.93 -1.67 -13.86 16 6 C 0.20 4.22 6.63 38.17 0.25 4.47 16 7 C -0.17 -4.26 9.15 22.39 0.20 -4.06 16 8 C -0.11 -3.66 8.83 22.37 0.20 -3.46 16 9 C 0.08 2.81 6.32 38.12 0.24 3.05 16 10 C -0.08 -1.89 5.65 -19.77 -0.11 -2.00 16 11 C -0.15 -2.90 9.53 22.38 0.21 -2.69 16 12 C -0.07 -1.24 5.99 29.81 0.18 -1.06 16 13 C -0.13 -3.21 6.07 29.75 0.18 -3.03 16 14 C 0.50 19.51 7.46 87.63 0.65 20.17 16 15 O -0.59 -28.60 16.60 -3.09 -0.05 -28.66 16 16 N -0.55 -22.01 2.70 -631.69 -1.70 -23.71 16 17 C 0.13 5.82 4.62 86.38 0.40 6.22 16 18 C 0.03 1.71 5.10 29.85 0.15 1.86 16 19 C -0.55 -32.08 9.11 25.60 0.23 -31.84 16 20 H 0.06 3.58 7.74 -2.91 -0.02 3.55 16 21 C 0.00 0.25 5.46 84.66 0.46 0.71 16 22 N -0.93 -57.84 13.29 21.45 0.28 -57.56 16 23 Si 0.97 44.93 29.54 68.60 2.03 46.96 16 24 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 25 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 26 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 27 C 0.49 7.25 7.68 71.23 0.55 7.80 16 28 O -0.54 -10.63 16.59 21.99 0.36 -10.26 16 29 O -0.50 -4.84 13.34 -51.46 -0.69 -5.53 16 30 H 0.12 1.55 8.06 -2.91 -0.02 1.52 16 31 H 0.10 1.53 6.97 -2.91 -0.02 1.51 16 32 H 0.12 1.61 8.06 -2.91 -0.02 1.59 16 33 H 0.41 6.34 7.81 -92.70 -0.72 5.62 16 34 H 0.14 2.93 4.74 -2.91 -0.01 2.92 16 35 H 0.11 4.29 5.71 -2.91 -0.02 4.27 16 36 H 0.16 2.03 8.06 -2.91 -0.02 2.01 16 37 H 0.09 1.57 8.14 -2.39 -0.02 1.56 16 38 H 0.13 1.39 8.06 -2.39 -0.02 1.37 16 39 H 0.12 2.58 8.14 -2.39 -0.02 2.56 16 40 H 0.11 2.54 8.14 -2.39 -0.02 2.52 16 41 H 0.08 3.60 7.12 -2.38 -0.02 3.58 16 42 H 0.06 2.95 7.37 -2.39 -0.02 2.94 16 43 H -0.03 -1.78 8.14 -2.39 -0.02 -1.80 16 44 H 0.01 0.36 6.86 -2.39 -0.02 0.34 16 45 H 0.26 15.42 8.31 -92.72 -0.77 14.65 16 46 H 0.43 0.46 9.10 -74.06 -0.67 -0.21 16 Total: -1.00 -82.34 384.07 3.29 -79.05 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: -0.35 Total: 18.12 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: 5.08 Total: -4.54 kcal Atomic # 7 Polarization: -92.04 SS G_CDS: -3.09 Total: -95.13 kcal Atomic # 8 Polarization: -44.07 SS G_CDS: -0.37 Total: -44.45 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -82.34 3.29 -79.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588702720.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.404 kcal (2) G-P(sol) polarization free energy of solvation -82.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds