Wall clock time and date at job start Wed Apr 1 2020 02:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50696 * 109.47032 * 2 1 4 4 N 1.34629 * 125.89594 * 264.97309 * 3 2 1 5 5 H 0.96999 * 124.81219 * 0.02562 * 4 3 2 6 6 C 1.36433 * 110.37820 * 180.02562 * 4 3 2 7 7 C 1.50707 * 125.45529 * 180.02562 * 6 4 3 8 8 N 1.46898 * 109.47094 * 84.99808 * 7 6 4 9 9 C 1.46902 * 111.00020 * 179.97438 * 8 7 6 10 10 C 1.50697 * 109.47272 * 179.97438 * 9 8 7 11 11 C 1.38305 * 119.93136 * 269.72837 * 10 9 8 12 12 C 1.38105 * 120.06682 * 179.71991 * 11 10 9 13 13 C 1.38884 * 119.92766 * 0.57662 * 12 11 10 14 14 O 1.35752 * 120.06094 * 179.67805 * 13 12 11 15 15 C 1.34839 * 116.99404 * 174.48300 * 14 13 12 16 16 H 1.08006 * 119.99939 * 5.06066 * 15 14 13 17 17 C 1.38646 * 120.00079 * 185.05644 * 15 14 13 18 18 N 1.31562 * 119.99797 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00205 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47223 * 59.99849 * 19 17 15 21 21 H 1.48501 * 109.46910 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.46706 * 299.99589 * 19 17 15 23 23 C 1.38873 * 119.86313 * 359.69672 * 13 12 11 24 24 C 1.38092 * 119.93314 * 0.02562 * 23 13 12 25 25 C 1.34427 * 109.08850 * 0.26171 * 6 4 3 26 26 C 1.37841 * 125.90066 * 85.02270 * 3 2 1 27 27 C 1.47110 * 127.01862 * 359.97438 * 26 3 2 28 28 O 1.21556 * 120.00431 * 0.02562 * 27 26 3 29 29 O 1.34786 * 120.00199 * 180.02562 * 27 26 3 30 30 H 1.08998 * 109.46978 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47051 * 300.00128 * 1 2 3 32 32 H 1.08998 * 109.46682 * 59.99933 * 1 2 3 33 33 H 1.09007 * 109.46680 * 239.99988 * 2 1 3 34 34 H 1.08996 * 109.47043 * 120.00446 * 2 1 3 35 35 H 1.08998 * 109.46760 * 325.00231 * 7 6 4 36 36 H 1.08998 * 109.47258 * 205.00236 * 7 6 4 37 37 H 1.00897 * 110.99904 * 56.04528 * 8 7 6 38 38 H 1.08999 * 109.47302 * 300.00224 * 9 8 7 39 39 H 1.09004 * 109.46876 * 59.99934 * 9 8 7 40 40 H 1.07994 * 119.96661 * 359.97438 * 11 10 9 41 41 H 1.07996 * 120.03339 * 180.26834 * 12 11 10 42 42 H 0.97007 * 119.99707 * 179.97438 * 18 17 15 43 43 H 1.08002 * 120.03512 * 179.97438 * 23 13 12 44 44 H 1.08001 * 119.96812 * 179.97438 * 24 23 13 45 45 H 1.07997 * 126.81380 * 179.71082 * 25 6 4 46 46 H 0.96696 * 117.00511 * 179.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.3855 2.1331 -1.0864 5 1 2.3540 1.8044 -1.9984 6 6 2.7941 3.3830 -0.7228 7 6 3.2624 4.4592 -1.6681 8 7 2.1011 5.1930 -2.1887 9 6 2.5202 6.2529 -3.1154 10 6 1.3048 6.9816 -3.6280 11 6 0.6758 6.5484 -4.7811 12 6 -0.4416 7.2106 -5.2502 13 6 -0.9265 8.3198 -4.5694 14 8 -2.0208 8.9767 -5.0317 15 6 -2.5066 9.9728 -4.2637 16 1 -1.9804 10.2703 -3.3687 17 6 -3.6815 10.6153 -4.6230 18 7 -4.3222 10.2532 -5.7135 19 14 -4.3541 11.9958 -3.5594 20 1 -3.3554 13.0919 -3.4811 21 1 -5.6117 12.5128 -4.1565 22 1 -4.6305 11.4794 -2.1947 23 6 -0.2893 8.7556 -3.4150 24 6 0.8243 8.0858 -2.9478 25 6 2.7170 3.4991 0.6143 26 6 2.2104 2.2151 1.1123 27 6 1.9509 1.8486 2.5132 28 8 1.5337 0.7394 2.7840 29 8 2.1756 2.7426 3.4965 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3632 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 3.8056 4.0041 -2.4963 36 1 3.9195 5.1482 -1.1375 37 1 1.5448 5.5702 -1.4362 38 1 3.1720 6.9543 -2.5944 39 1 3.0587 5.8106 -3.9536 40 1 1.0565 5.6890 -5.3129 41 1 -0.9349 6.8693 -6.1482 42 1 -5.1445 10.7025 -5.9647 43 1 -0.6637 9.6181 -2.8836 44 1 1.3205 8.4245 -2.0504 45 1 2.9751 4.3659 1.2046 46 1 1.9900 2.4561 4.4012 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001597395069.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:17:54 Heat of formation + Delta-G solvation = -60.896749 kcal Electronic energy + Delta-G solvation = -28110.199595 eV Core-core repulsion = 23965.616429 eV Total energy + Delta-G solvation = -4144.583166 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.67875 -39.73451 -39.09949 -37.18790 -36.18263 -35.57314 -33.82175 -32.33636 -31.44992 -30.70134 -30.17706 -28.54500 -25.96786 -25.14334 -24.76725 -23.53378 -22.39356 -21.97003 -20.71921 -20.41720 -19.84247 -18.16965 -17.99703 -17.34586 -16.87045 -15.98373 -15.78457 -15.47875 -15.12918 -15.04294 -14.57552 -14.56626 -14.31010 -14.21562 -13.91231 -13.75815 -13.53974 -13.43853 -13.26193 -12.89899 -12.70997 -12.52141 -12.32171 -11.99618 -11.97063 -11.73328 -11.66754 -11.56866 -11.28314 -11.21267 -10.80840 -10.69714 -10.64906 -10.60830 -10.45149 -9.35966 -9.18083 -8.86415 -8.60004 -8.33549 -8.19402 -7.21024 -6.46803 -4.05857 1.24946 1.99110 2.20529 2.29874 2.67196 3.08869 3.11871 3.13242 3.15915 3.23130 3.95199 4.20525 4.36137 4.55602 4.64826 4.70039 4.89973 5.01911 5.08189 5.15624 5.19245 5.26528 5.26883 5.29428 5.35141 5.40867 5.51154 5.58313 5.70128 5.72143 5.76145 5.85220 5.96546 5.97889 6.19046 6.37899 6.39945 6.45194 6.67363 6.67819 6.84313 6.91766 7.02867 7.12703 7.23762 7.27597 7.39313 7.42785 7.80653 7.87698 7.97994 8.98677 9.68403 10.71037 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.012635 B = 0.001916 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2215.529391 B =14613.025810 C =15241.994474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.065 4.065 3 C 0.128 3.872 4 N -0.528 5.528 5 H 0.420 0.580 6 C 0.022 3.978 7 C 0.122 3.878 8 N -0.684 5.684 9 C 0.118 3.882 10 C -0.187 4.187 11 C -0.052 4.052 12 C -0.195 4.195 13 C 0.156 3.844 14 O -0.177 6.177 15 C -0.393 4.393 16 H 0.091 0.909 17 C 0.039 3.961 18 N -0.862 5.862 19 Si 0.941 3.059 20 H -0.270 1.270 21 H -0.278 1.278 22 H -0.270 1.270 23 C -0.234 4.234 24 C -0.064 4.064 25 C -0.137 4.137 26 C -0.232 4.232 27 C 0.559 3.441 28 O -0.531 6.531 29 O -0.514 6.514 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.072 0.928 34 H 0.101 0.899 35 H 0.079 0.921 36 H 0.055 0.945 37 H 0.348 0.652 38 H 0.031 0.969 39 H 0.070 0.930 40 H 0.110 0.890 41 H 0.116 0.884 42 H 0.271 0.729 43 H 0.126 0.874 44 H 0.103 0.897 45 H 0.149 0.851 46 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.872 -16.311 11.849 25.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.103 4.103 3 C 0.007 3.993 4 N -0.123 5.123 5 H 0.258 0.742 6 C -0.088 4.088 7 C -0.007 4.007 8 N -0.317 5.317 9 C -0.009 4.009 10 C -0.188 4.188 11 C -0.071 4.071 12 C -0.215 4.215 13 C 0.102 3.898 14 O -0.080 6.080 15 C -0.469 4.469 16 H 0.109 0.891 17 C -0.165 4.165 18 N -0.497 5.497 19 Si 0.765 3.235 20 H -0.195 1.195 21 H -0.203 1.203 22 H -0.195 1.195 23 C -0.254 4.254 24 C -0.083 4.083 25 C -0.161 4.161 26 C -0.240 4.240 27 C 0.405 3.595 28 O -0.423 6.423 29 O -0.325 6.325 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.119 0.881 35 H 0.097 0.903 36 H 0.073 0.927 37 H 0.167 0.833 38 H 0.049 0.951 39 H 0.089 0.911 40 H 0.128 0.872 41 H 0.134 0.866 42 H 0.081 0.919 43 H 0.144 0.856 44 H 0.121 0.879 45 H 0.167 0.833 46 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 15.390 -16.855 10.518 25.131 hybrid contribution -0.165 1.156 1.402 1.824 sum 15.225 -15.699 11.920 24.907 Atomic orbital electron populations 1.21675 0.93548 1.02289 1.02558 1.20353 0.97080 0.88757 1.04093 1.20570 0.98713 0.94545 0.85477 1.41485 1.50396 1.11446 1.08927 0.74198 1.20116 1.07528 0.86736 0.94380 1.20419 0.92638 0.92319 0.95360 1.60671 1.19864 1.29549 1.21588 1.20627 0.94415 0.90797 0.95094 1.19066 1.00888 0.99687 0.99197 1.20442 0.94061 0.97487 0.95082 1.20224 1.00249 0.97758 1.03226 1.19410 0.87943 0.90800 0.91631 1.83982 1.36576 1.43250 1.44206 1.21279 1.07455 1.10945 1.07196 0.89118 1.25292 0.95337 0.98848 0.97019 1.70033 1.16672 1.40372 1.22632 0.85784 0.78514 0.79867 0.79291 1.19499 1.20256 1.19473 1.21118 0.99664 1.04371 1.00223 1.20593 0.95316 0.94619 0.97771 1.21842 1.04542 0.97182 0.92528 1.19186 1.19003 0.96978 0.88836 1.19820 0.73044 0.81310 0.85283 1.90856 1.44438 1.22592 1.84398 1.84598 1.81303 1.46650 1.19926 0.91787 0.91838 0.92700 0.90959 0.88051 0.90274 0.92708 0.83334 0.95131 0.91111 0.87178 0.86600 0.91943 0.85626 0.87859 0.83318 0.73337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 9.90 37.16 0.37 -0.83 16 2 C -0.06 -0.52 5.81 -27.88 -0.16 -0.68 16 3 C 0.13 1.22 6.47 -81.51 -0.53 0.70 16 4 N -0.53 -4.42 5.89 -5.20 -0.03 -4.45 16 5 H 0.42 2.58 8.96 -40.82 -0.37 2.22 16 6 C 0.02 0.20 6.63 -81.89 -0.54 -0.34 16 7 C 0.12 1.04 6.21 -4.97 -0.03 1.01 16 8 N -0.68 -7.57 6.48 -116.34 -0.75 -8.32 16 9 C 0.12 1.42 5.81 -4.98 -0.03 1.39 16 10 C -0.19 -3.00 5.40 -104.57 -0.56 -3.56 16 11 C -0.05 -0.90 9.69 -39.61 -0.38 -1.28 16 12 C -0.20 -4.07 9.99 -39.39 -0.39 -4.47 16 13 C 0.16 3.74 6.65 -39.11 -0.26 3.48 16 14 O -0.18 -5.03 9.76 0.02 0.00 -5.03 16 15 C -0.39 -10.92 9.49 30.88 0.29 -10.62 16 16 H 0.09 2.33 5.20 -52.48 -0.27 2.05 16 17 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 18 N -0.86 -25.22 13.67 55.48 0.76 -24.46 16 19 Si 0.94 20.42 29.55 -169.99 -5.02 15.39 16 20 H -0.27 -5.66 7.11 56.52 0.40 -5.25 16 21 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 22 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 23 C -0.23 -4.99 9.17 -39.40 -0.36 -5.35 16 24 C -0.06 -1.12 9.69 -39.61 -0.38 -1.51 16 25 C -0.14 -1.40 10.89 -37.49 -0.41 -1.81 16 26 C -0.23 -2.57 6.33 -103.01 -0.65 -3.23 16 27 C 0.56 6.31 8.32 34.33 0.29 6.59 16 28 O -0.53 -6.82 15.66 -19.31 -0.30 -7.12 16 29 O -0.51 -4.56 13.33 -40.73 -0.54 -5.10 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.65 8.02 -51.93 -0.42 0.23 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.10 0.91 6.79 -51.93 -0.35 0.56 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.35 4.15 8.71 -39.29 -0.34 3.81 16 38 H 0.03 0.34 8.08 -51.93 -0.42 -0.08 16 39 H 0.07 0.78 8.08 -51.93 -0.42 0.36 16 40 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 41 H 0.12 2.35 8.06 -52.49 -0.42 1.93 16 42 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 43 H 0.13 2.69 5.64 -52.49 -0.30 2.40 16 44 H 0.10 1.53 8.06 -52.49 -0.42 1.11 16 45 H 0.15 1.38 8.06 -52.49 -0.42 0.95 16 46 H 0.41 1.73 9.11 45.56 0.42 2.14 16 LS Contribution 397.45 15.07 5.99 5.99 Total: -1.00 -33.49 397.45 -9.16 -42.65 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -5.41 Total: 10.00 kcal Atomic # 6 Polarization: -15.70 SS G_CDS: -3.85 Total: -19.55 kcal Atomic # 7 Polarization: -37.20 SS G_CDS: -0.03 Total: -37.23 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: -0.85 Total: -17.25 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.49 -9.16 -42.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001597395069.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.246 kcal (2) G-P(sol) polarization free energy of solvation -33.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds