Wall clock time and date at job start Wed Apr 1 2020 02:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47007 * 2 1 4 4 C 1.52997 * 109.47565 * 119.99947 * 2 1 3 5 5 C 1.53005 * 109.46955 * 300.00326 * 4 2 1 6 6 N 1.46500 * 109.46967 * 179.97438 * 5 4 2 7 7 C 1.34777 * 119.99616 * 179.97438 * 6 5 4 8 8 O 1.21660 * 120.00173 * 4.70131 * 7 6 5 9 9 C 1.46896 * 119.99628 * 184.70686 * 7 6 5 10 10 C 1.36125 * 125.43574 * 173.63035 * 9 7 6 11 11 C 1.41702 * 107.74678 * 180.23797 * 10 9 7 12 12 C 1.40013 * 133.34656 * 179.81792 * 11 10 9 13 13 C 1.36581 * 119.82907 * 179.97438 * 12 11 10 14 14 C 1.38855 * 120.60037 * 0.02562 * 13 12 11 15 15 C 1.37847 * 120.63211 * 359.97438 * 14 13 12 16 16 C 1.39086 * 119.81378 * 0.02562 * 15 14 13 17 17 N 1.37839 * 133.16192 * 180.02562 * 16 15 14 18 18 C 1.36881 * 125.62215 * 359.93735 * 17 16 15 19 19 H 1.08002 * 120.00421 * 137.97323 * 18 17 16 20 20 C 1.39017 * 120.00211 * 317.97917 * 18 17 16 21 21 N 1.31346 * 119.99507 * 341.86883 * 20 18 17 22 22 Si 1.86804 * 120.00014 * 161.59557 * 20 18 17 23 23 H 1.48501 * 109.46959 * 180.27354 * 22 20 18 24 24 H 1.48496 * 109.47051 * 300.27075 * 22 20 18 25 25 H 1.48496 * 109.46880 * 60.27289 * 22 20 18 26 26 C 1.50707 * 109.47053 * 240.00111 * 2 1 3 27 27 O 1.20827 * 119.99813 * 239.99714 * 26 2 1 28 28 O 1.34225 * 119.99637 * 59.99935 * 26 2 1 29 29 H 1.09004 * 109.47036 * 300.00219 * 1 2 3 30 30 H 1.09004 * 109.47408 * 60.00008 * 1 2 3 31 31 H 1.09003 * 109.46951 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46902 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.46765 * 299.99868 * 3 2 1 34 34 H 1.08990 * 109.47287 * 60.00095 * 3 2 1 35 35 H 1.08991 * 109.47323 * 179.97438 * 4 2 1 36 36 H 1.08997 * 109.46949 * 59.99566 * 4 2 1 37 37 H 1.08999 * 109.47256 * 59.99922 * 5 4 2 38 38 H 1.09003 * 109.46862 * 299.99772 * 5 4 2 39 39 H 0.97001 * 120.00162 * 0.02562 * 6 5 4 40 40 H 1.07993 * 126.12192 * 0.02562 * 10 9 7 41 41 H 1.08002 * 120.09096 * 359.94374 * 12 11 10 42 42 H 1.08004 * 119.70199 * 180.02562 * 13 12 11 43 43 H 1.07996 * 119.68642 * 180.02562 * 14 13 12 44 44 H 1.07997 * 120.09192 * 180.02562 * 15 14 13 45 45 H 0.97002 * 120.00380 * 353.60242 * 21 20 18 46 46 H 0.96700 * 116.99356 * 180.02562 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.5300 0.0000 2.4985 6 7 2.0179 -0.6909 3.6946 7 6 1.6926 -0.2302 4.9187 8 8 0.9252 0.7070 5.0318 9 6 2.2649 -0.8596 6.1163 10 6 2.1122 -0.4118 7.3927 11 6 2.8214 -1.2922 8.2470 12 6 3.0220 -1.3333 9.6321 13 6 3.7741 -2.3330 10.1802 14 6 4.3438 -3.3112 9.3759 15 6 4.1604 -3.2917 8.0098 16 6 3.3985 -2.2837 7.4287 17 7 3.0430 -2.0018 6.1271 18 6 3.4050 -2.7303 5.0262 19 1 2.6820 -2.9301 4.2491 20 6 4.7033 -3.2130 4.9082 21 7 5.6651 -2.6957 5.6379 22 14 5.0785 -4.6027 3.7175 23 1 6.5242 -4.9355 3.7850 24 1 4.2777 -5.7983 4.0841 25 1 4.7319 -4.1789 2.3372 26 6 2.0323 -0.7104 -1.2305 27 8 2.7270 -1.6928 -1.1197 28 8 1.7080 -0.2518 -2.4496 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 3.1300 -0.7216 1.2489 36 1 1.6767 -1.7488 1.2492 37 1 0.4400 0.0000 2.4985 38 1 1.8933 1.0277 2.4984 39 1 2.5757 -1.4795 3.6056 40 1 1.5537 0.4603 7.6989 41 1 2.5836 -0.5763 10.2655 42 1 3.9272 -2.3630 11.2489 43 1 4.9354 -4.0951 9.8250 44 1 4.6071 -4.0571 7.3926 45 1 5.4902 -1.9172 6.1897 46 1 2.0534 -0.7410 -3.2088 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001602942672.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:29:43 Heat of formation + Delta-G solvation = -84.428370 kcal Electronic energy + Delta-G solvation = -30284.279194 eV Core-core repulsion = 26138.675620 eV Total energy + Delta-G solvation = -4145.603574 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.84160 -40.66843 -38.72550 -37.08905 -36.20945 -36.10293 -34.19350 -33.57867 -30.65700 -29.64565 -28.77208 -27.81105 -27.66424 -25.29210 -24.83563 -23.64216 -22.13318 -21.07771 -20.22450 -19.82709 -19.19781 -18.38210 -18.05086 -16.85961 -16.46661 -15.97292 -15.73313 -15.40685 -15.36334 -14.94606 -14.54167 -14.14946 -14.09120 -13.93099 -13.68661 -13.60481 -13.19478 -13.15441 -12.93927 -12.62718 -12.43578 -12.19784 -12.12569 -11.83289 -11.76830 -11.55578 -11.52157 -11.23691 -11.12617 -10.95522 -10.91157 -10.58713 -10.48089 -10.44163 -10.37332 -9.93229 -9.49992 -9.22619 -8.85864 -8.56740 -7.58595 -7.08036 -6.79648 -4.75054 1.68059 2.02664 2.58320 2.75020 2.97435 3.08013 3.08587 3.25898 3.71023 3.80931 4.16618 4.31696 4.44823 4.52842 4.60223 4.66545 4.85756 5.08957 5.11636 5.20387 5.42012 5.50253 5.52483 5.56030 5.61726 5.70521 5.80085 5.81014 5.83782 5.91555 6.02174 6.12662 6.19430 6.26813 6.29357 6.38029 6.51550 6.73317 6.84540 6.93345 6.96535 7.17170 7.35526 7.44461 7.52881 7.69516 7.74186 7.77692 8.09185 8.19569 8.60008 8.86471 9.04896 10.03393 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.013663 B = 0.003374 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2048.894089 B = 8296.026091 C =10021.602216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.046 4.046 3 C -0.147 4.147 4 C -0.117 4.117 5 C 0.118 3.882 6 N -0.729 5.729 7 C 0.596 3.404 8 O -0.558 6.558 9 C -0.022 4.022 10 C -0.165 4.165 11 C -0.129 4.129 12 C -0.081 4.081 13 C -0.160 4.160 14 C -0.135 4.135 15 C -0.080 4.080 16 C 0.069 3.931 17 N -0.265 5.265 18 C -0.450 4.450 19 H 0.103 0.897 20 C 0.031 3.969 21 N -0.819 5.819 22 Si 1.070 2.930 23 H -0.270 1.270 24 H -0.274 1.274 25 H -0.272 1.272 26 C 0.486 3.514 27 O -0.508 6.508 28 O -0.515 6.515 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.418 0.582 40 H 0.134 0.866 41 H 0.107 0.893 42 H 0.106 0.894 43 H 0.110 0.890 44 H 0.119 0.881 45 H 0.291 0.709 46 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.111 2.899 -10.264 11.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.047 4.047 3 C -0.204 4.204 4 C -0.155 4.155 5 C -0.006 4.006 6 N -0.389 5.389 7 C 0.385 3.615 8 O -0.438 6.438 9 C -0.136 4.136 10 C -0.192 4.192 11 C -0.134 4.134 12 C -0.100 4.100 13 C -0.179 4.179 14 C -0.156 4.156 15 C -0.100 4.100 16 C -0.046 4.046 17 N 0.071 4.929 18 C -0.577 4.577 19 H 0.120 0.880 20 C -0.186 4.186 21 N -0.444 5.444 22 Si 0.892 3.108 23 H -0.194 1.194 24 H -0.200 1.200 25 H -0.197 1.197 26 C 0.328 3.672 27 O -0.394 6.394 28 O -0.327 6.327 29 H 0.099 0.901 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.099 0.901 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.264 0.736 40 H 0.152 0.848 41 H 0.126 0.874 42 H 0.124 0.876 43 H 0.128 0.872 44 H 0.137 0.863 45 H 0.103 0.897 46 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -4.264 2.340 -10.716 11.768 hybrid contribution -0.583 0.282 -0.075 0.652 sum -4.848 2.622 -10.791 12.117 Atomic orbital electron populations 1.21978 0.91314 1.03219 1.03888 1.20398 0.98131 0.96793 0.89423 1.21979 1.01854 0.92737 1.03863 1.21730 1.02641 0.99954 0.91189 1.21355 0.99286 0.96303 0.83641 1.46723 1.54129 1.33519 1.04566 1.17210 0.79743 0.82279 0.82240 1.90710 1.36266 1.29812 1.87011 1.20187 1.07052 0.91943 0.94461 1.20406 1.06535 1.01991 0.90301 1.18008 1.03796 0.98375 0.93193 1.20121 0.99136 0.98160 0.92580 1.20336 1.02076 0.96978 0.98490 1.20611 1.02328 0.99727 0.92887 1.20207 0.98124 0.97526 0.94144 1.18433 1.03457 0.98722 0.83942 1.40134 1.33219 1.15435 1.04108 1.20452 0.99370 1.37185 1.00708 0.88021 1.26826 0.90474 1.01265 1.00037 1.70601 1.33873 1.18894 1.21077 0.83485 0.77727 0.74551 0.75019 1.19440 1.19975 1.19681 1.23464 0.76836 0.82283 0.84649 1.90760 1.35478 1.26029 1.87179 1.84524 1.72341 1.59009 1.16797 0.90144 0.91108 0.91856 0.91794 0.91112 0.90152 0.89887 0.90082 0.91355 0.91473 0.73605 0.84803 0.87447 0.87554 0.87227 0.86348 0.89651 0.73377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 8.05 37.16 0.30 -1.01 16 2 C -0.05 -0.48 0.74 -155.66 -0.11 -0.60 16 3 C -0.15 -1.35 8.05 37.16 0.30 -1.05 16 4 C -0.12 -1.55 3.67 -26.73 -0.10 -1.65 16 5 C 0.12 1.76 4.97 -4.04 -0.02 1.74 16 6 N -0.73 -13.97 5.49 -61.55 -0.34 -14.31 16 7 C 0.60 13.29 7.76 -12.76 -0.10 13.19 16 8 O -0.56 -13.05 16.85 5.22 0.09 -12.96 16 9 C -0.02 -0.52 6.77 -82.24 -0.56 -1.07 16 10 C -0.16 -3.80 10.55 -39.02 -0.41 -4.21 16 11 C -0.13 -2.96 6.16 -106.90 -0.66 -3.62 16 12 C -0.08 -1.61 10.06 -39.52 -0.40 -2.01 16 13 C -0.16 -2.97 9.97 -39.95 -0.40 -3.37 16 14 C -0.14 -2.67 10.02 -39.50 -0.40 -3.07 16 15 C -0.08 -1.83 8.56 -39.41 -0.34 -2.17 16 16 C 0.07 1.68 5.42 -83.83 -0.45 1.22 16 17 N -0.26 -6.51 2.57 -56.08 -0.14 -6.66 16 18 C -0.45 -10.71 7.79 -15.01 -0.12 -10.83 16 19 H 0.10 2.29 6.27 -52.49 -0.33 1.96 16 20 C 0.03 0.73 4.40 -17.47 -0.08 0.65 16 21 N -0.82 -20.88 12.00 55.50 0.67 -20.21 16 22 Si 1.07 20.68 29.96 -169.99 -5.09 15.59 16 23 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 24 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 25 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 26 C 0.49 5.54 6.92 36.01 0.25 5.79 16 27 O -0.51 -7.61 16.74 -18.75 -0.31 -7.93 16 28 O -0.51 -4.24 13.23 -39.25 -0.52 -4.76 16 29 H 0.08 0.71 6.43 -51.93 -0.33 0.37 16 30 H 0.07 0.54 8.11 -51.93 -0.42 0.12 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.56 8.11 -51.93 -0.42 0.13 16 34 H 0.08 0.72 6.43 -51.93 -0.33 0.39 16 35 H 0.08 1.19 8.10 -51.93 -0.42 0.77 16 36 H 0.08 1.12 8.10 -51.93 -0.42 0.70 16 37 H 0.07 0.97 6.43 -51.93 -0.33 0.64 16 38 H 0.07 0.97 6.43 -51.93 -0.33 0.64 16 39 H 0.42 8.29 4.24 -40.82 -0.17 8.12 16 40 H 0.13 2.84 8.06 -52.49 -0.42 2.41 16 41 H 0.11 1.83 8.06 -52.49 -0.42 1.40 16 42 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 43 H 0.11 1.86 8.06 -52.49 -0.42 1.43 16 44 H 0.12 2.79 6.77 -52.49 -0.36 2.44 16 45 H 0.29 7.89 6.92 -40.82 -0.28 7.60 16 46 H 0.41 1.73 9.10 45.56 0.41 2.15 16 LS Contribution 378.00 15.07 5.70 5.70 Total: -1.00 -30.70 378.00 -8.32 -39.03 By element: Atomic # 1 Polarization: 23.67 SS G_CDS: -5.08 Total: 18.59 kcal Atomic # 6 Polarization: -8.78 SS G_CDS: -3.29 Total: -12.07 kcal Atomic # 7 Polarization: -41.36 SS G_CDS: 0.18 Total: -41.18 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: -0.74 Total: -25.65 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.09 Total: 15.59 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.70 -8.32 -39.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001602942672.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.403 kcal (2) G-P(sol) polarization free energy of solvation -30.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds