Wall clock time and date at job start Wed Apr 1 2020 02:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47007 * 2 1 4 4 C 1.52997 * 109.47565 * 119.99947 * 2 1 3 5 5 C 1.53005 * 109.46955 * 300.00326 * 4 2 1 6 6 N 1.46500 * 109.46967 * 179.97438 * 5 4 2 7 7 C 1.34777 * 119.99616 * 179.97438 * 6 5 4 8 8 O 1.21660 * 120.00173 * 4.70131 * 7 6 5 9 9 C 1.46896 * 119.99628 * 184.70686 * 7 6 5 10 10 C 1.36125 * 125.43574 * 173.63035 * 9 7 6 11 11 C 1.41702 * 107.74678 * 180.23797 * 10 9 7 12 12 C 1.40013 * 133.34656 * 179.81792 * 11 10 9 13 13 C 1.36581 * 119.82907 * 179.97438 * 12 11 10 14 14 C 1.38855 * 120.60037 * 0.02562 * 13 12 11 15 15 C 1.37847 * 120.63211 * 359.97438 * 14 13 12 16 16 C 1.39086 * 119.81378 * 0.02562 * 15 14 13 17 17 N 1.37839 * 133.16192 * 180.02562 * 16 15 14 18 18 C 1.36881 * 125.62215 * 359.93735 * 17 16 15 19 19 H 1.08002 * 120.00421 * 137.97323 * 18 17 16 20 20 C 1.39017 * 120.00211 * 317.97917 * 18 17 16 21 21 N 1.31346 * 119.99507 * 341.86883 * 20 18 17 22 22 Si 1.86804 * 120.00014 * 161.59557 * 20 18 17 23 23 H 1.48501 * 109.46959 * 180.27354 * 22 20 18 24 24 H 1.48496 * 109.47051 * 300.27075 * 22 20 18 25 25 H 1.48496 * 109.46880 * 60.27289 * 22 20 18 26 26 C 1.50707 * 109.47053 * 240.00111 * 2 1 3 27 27 O 1.20827 * 119.99813 * 239.99714 * 26 2 1 28 28 O 1.34225 * 119.99637 * 59.99935 * 26 2 1 29 29 H 1.09004 * 109.47036 * 300.00219 * 1 2 3 30 30 H 1.09004 * 109.47408 * 60.00008 * 1 2 3 31 31 H 1.09003 * 109.46951 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46902 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.46765 * 299.99868 * 3 2 1 34 34 H 1.08990 * 109.47287 * 60.00095 * 3 2 1 35 35 H 1.08991 * 109.47323 * 179.97438 * 4 2 1 36 36 H 1.08997 * 109.46949 * 59.99566 * 4 2 1 37 37 H 1.08999 * 109.47256 * 59.99922 * 5 4 2 38 38 H 1.09003 * 109.46862 * 299.99772 * 5 4 2 39 39 H 0.97001 * 120.00162 * 0.02562 * 6 5 4 40 40 H 1.07993 * 126.12192 * 0.02562 * 10 9 7 41 41 H 1.08002 * 120.09096 * 359.94374 * 12 11 10 42 42 H 1.08004 * 119.70199 * 180.02562 * 13 12 11 43 43 H 1.07996 * 119.68642 * 180.02562 * 14 13 12 44 44 H 1.07997 * 120.09192 * 180.02562 * 15 14 13 45 45 H 0.97002 * 120.00380 * 353.60242 * 21 20 18 46 46 H 0.96700 * 116.99356 * 180.02562 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.5300 0.0000 2.4985 6 7 2.0179 -0.6909 3.6946 7 6 1.6926 -0.2302 4.9187 8 8 0.9252 0.7070 5.0318 9 6 2.2649 -0.8596 6.1163 10 6 2.1122 -0.4118 7.3927 11 6 2.8214 -1.2922 8.2470 12 6 3.0220 -1.3333 9.6321 13 6 3.7741 -2.3330 10.1802 14 6 4.3438 -3.3112 9.3759 15 6 4.1604 -3.2917 8.0098 16 6 3.3985 -2.2837 7.4287 17 7 3.0430 -2.0018 6.1271 18 6 3.4050 -2.7303 5.0262 19 1 2.6820 -2.9301 4.2491 20 6 4.7033 -3.2130 4.9082 21 7 5.6651 -2.6957 5.6379 22 14 5.0785 -4.6027 3.7175 23 1 6.5242 -4.9355 3.7850 24 1 4.2777 -5.7983 4.0841 25 1 4.7319 -4.1789 2.3372 26 6 2.0323 -0.7104 -1.2305 27 8 2.7270 -1.6928 -1.1197 28 8 1.7080 -0.2518 -2.4496 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 3.1300 -0.7216 1.2489 36 1 1.6767 -1.7488 1.2492 37 1 0.4400 0.0000 2.4985 38 1 1.8933 1.0277 2.4984 39 1 2.5757 -1.4795 3.6056 40 1 1.5537 0.4603 7.6989 41 1 2.5836 -0.5763 10.2655 42 1 3.9272 -2.3630 11.2489 43 1 4.9354 -4.0951 9.8250 44 1 4.6071 -4.0571 7.3926 45 1 5.4902 -1.9172 6.1897 46 1 2.0534 -0.7410 -3.2088 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001602942672.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:29:42 Heat of formation + Delta-G solvation = -102.487054 kcal Electronic energy + Delta-G solvation = -30285.062277 eV Core-core repulsion = 26138.675620 eV Total energy + Delta-G solvation = -4146.386657 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.44357 -41.69307 -40.32953 -38.12563 -37.76528 -37.09603 -35.80526 -35.16575 -32.38801 -31.13377 -30.33487 -29.32001 -28.38885 -26.68385 -26.23702 -24.98015 -23.44933 -22.78246 -21.87021 -21.30997 -20.55394 -19.90762 -18.90884 -18.22697 -17.77768 -17.49071 -16.96860 -16.78569 -16.71573 -16.44531 -16.08139 -15.67364 -15.54308 -15.10410 -14.93218 -14.86312 -14.73299 -14.60300 -14.16016 -14.04553 -13.84096 -13.51701 -13.47421 -12.90651 -12.83447 -12.59903 -12.59805 -12.47793 -12.44176 -12.20046 -12.14157 -12.06489 -12.00252 -11.97268 -11.57771 -11.38517 -11.21619 -10.97851 -10.59080 -10.11212 -9.40216 -8.83996 -8.53330 -6.61366 -0.01772 0.94666 1.14185 1.25921 1.47862 1.52278 1.72379 1.89771 2.15800 2.30537 2.40659 2.60983 2.88515 3.18387 3.50069 3.65340 3.71438 3.95591 4.04081 4.10247 4.14990 4.29771 4.32093 4.41659 4.47743 4.61693 4.69255 4.71994 4.76663 4.81781 4.83737 4.85446 4.92786 4.97500 5.07785 5.15183 5.24816 5.26210 5.26886 5.39304 5.43653 5.56126 5.66211 5.73883 5.82457 6.03228 6.05716 6.41249 6.48774 6.82414 6.94956 7.16173 7.25940 8.13046 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.013663 B = 0.003374 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2048.894089 B = 8296.026091 C =10021.602216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.044 4.044 3 C -0.145 4.145 4 C -0.110 4.110 5 C 0.117 3.883 6 N -0.724 5.724 7 C 0.591 3.409 8 O -0.576 6.576 9 C -0.048 4.048 10 C -0.172 4.172 11 C -0.149 4.149 12 C -0.083 4.083 13 C -0.152 4.152 14 C -0.121 4.121 15 C -0.113 4.113 16 C 0.044 3.956 17 N -0.282 5.282 18 C -0.459 4.459 19 H 0.107 0.893 20 C 0.002 3.998 21 N -0.842 5.842 22 Si 1.113 2.887 23 H -0.274 1.274 24 H -0.263 1.263 25 H -0.257 1.257 26 C 0.493 3.507 27 O -0.550 6.550 28 O -0.502 6.502 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.414 0.586 40 H 0.147 0.853 41 H 0.140 0.860 42 H 0.152 0.848 43 H 0.141 0.859 44 H 0.101 0.899 45 H 0.271 0.729 46 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.761 3.050 -10.232 12.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.046 4.046 3 C -0.202 4.202 4 C -0.148 4.148 5 C -0.005 4.005 6 N -0.382 5.382 7 C 0.380 3.620 8 O -0.457 6.457 9 C -0.163 4.163 10 C -0.200 4.200 11 C -0.154 4.154 12 C -0.102 4.102 13 C -0.170 4.170 14 C -0.141 4.141 15 C -0.133 4.133 16 C -0.070 4.070 17 N 0.053 4.947 18 C -0.586 4.586 19 H 0.124 0.876 20 C -0.209 4.209 21 N -0.468 5.468 22 Si 0.930 3.070 23 H -0.199 1.199 24 H -0.187 1.187 25 H -0.182 1.182 26 C 0.337 3.663 27 O -0.441 6.441 28 O -0.315 6.315 29 H 0.101 0.899 30 H 0.108 0.892 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.109 0.891 34 H 0.100 0.900 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.098 0.902 38 H 0.092 0.908 39 H 0.259 0.741 40 H 0.164 0.836 41 H 0.157 0.843 42 H 0.170 0.830 43 H 0.159 0.841 44 H 0.119 0.881 45 H 0.081 0.919 46 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges -4.939 2.506 -10.728 12.073 hybrid contribution -0.416 0.273 -0.010 0.497 sum -5.355 2.779 -10.738 12.317 Atomic orbital electron populations 1.21985 0.89734 1.03428 1.04945 1.20371 0.99274 0.97048 0.87906 1.21988 1.01477 0.91797 1.04942 1.21617 1.01563 0.99730 0.91875 1.21586 0.99934 0.96407 0.82591 1.46752 1.53272 1.33158 1.05008 1.17170 0.79800 0.82201 0.82834 1.90676 1.37187 1.30525 1.87340 1.20612 1.07550 0.92468 0.95631 1.20675 1.06569 1.02374 0.90345 1.18401 1.04125 0.98104 0.94740 1.20561 0.98892 0.99229 0.91491 1.20825 1.00216 0.95414 1.00593 1.21079 1.01024 1.00310 0.91708 1.20269 0.99746 0.97733 0.95554 1.18890 1.04074 0.99718 0.84270 1.40280 1.34019 1.15954 1.04494 1.20682 0.99661 1.37173 1.01082 0.87591 1.28044 0.90230 1.02317 1.00328 1.70710 1.34444 1.19087 1.22547 0.82970 0.77349 0.72666 0.73999 1.19884 1.18717 1.18177 1.23499 0.75813 0.81408 0.85594 1.90752 1.37526 1.27943 1.87853 1.84468 1.71762 1.58778 1.16522 0.89925 0.89206 0.92105 0.92462 0.89142 0.89956 0.91510 0.90932 0.90201 0.90782 0.74073 0.83556 0.84263 0.83048 0.84102 0.88129 0.91854 0.71114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 8.05 71.98 0.58 -1.72 16 2 C -0.04 -0.89 0.74 -52.93 -0.04 -0.92 16 3 C -0.15 -2.44 8.05 71.98 0.58 -1.86 16 4 C -0.11 -2.91 3.67 30.60 0.11 -2.80 16 5 C 0.12 3.50 4.97 86.38 0.43 3.93 16 6 N -0.72 -28.48 5.49 -466.87 -2.56 -31.05 16 7 C 0.59 27.06 7.76 86.51 0.67 27.74 16 8 O -0.58 -27.27 16.85 -4.22 -0.07 -27.35 16 9 C -0.05 -2.39 6.77 39.91 0.27 -2.12 16 10 C -0.17 -8.06 10.55 22.63 0.24 -7.82 16 11 C -0.15 -6.86 6.16 -21.34 -0.13 -6.99 16 12 C -0.08 -3.12 10.06 22.31 0.22 -2.90 16 13 C -0.15 -5.14 9.97 22.03 0.22 -4.92 16 14 C -0.12 -4.56 10.02 22.32 0.22 -4.34 16 15 C -0.11 -5.23 8.56 22.38 0.19 -5.03 16 16 C 0.04 2.21 5.42 39.06 0.21 2.42 16 17 N -0.28 -14.41 2.57 -331.33 -0.85 -15.26 16 18 C -0.46 -22.66 7.79 84.09 0.66 -22.01 16 19 H 0.11 4.96 6.27 -2.91 -0.02 4.94 16 20 C 0.00 0.09 4.40 84.95 0.37 0.47 16 21 N -0.84 -44.52 12.00 21.67 0.26 -44.26 16 22 Si 1.11 42.38 29.96 68.60 2.06 44.44 16 23 H -0.27 -10.56 7.11 99.48 0.71 -9.86 16 24 H -0.26 -9.42 7.11 99.48 0.71 -8.72 16 25 H -0.26 -9.15 7.11 99.48 0.71 -8.44 16 26 C 0.49 10.66 6.92 71.24 0.49 11.15 16 27 O -0.55 -16.38 16.74 21.96 0.37 -16.01 16 28 O -0.50 -7.09 13.23 -51.37 -0.68 -7.77 16 29 H 0.08 1.30 6.43 -2.39 -0.02 1.28 16 30 H 0.09 1.12 8.11 -2.38 -0.02 1.10 16 31 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 33 H 0.09 1.18 8.11 -2.39 -0.02 1.16 16 34 H 0.08 1.36 6.43 -2.39 -0.02 1.35 16 35 H 0.07 1.98 8.10 -2.39 -0.02 1.96 16 36 H 0.07 2.03 8.10 -2.39 -0.02 2.01 16 37 H 0.08 2.23 6.43 -2.39 -0.02 2.21 16 38 H 0.07 2.13 6.43 -2.39 -0.02 2.11 16 39 H 0.41 17.05 4.24 -92.71 -0.39 16.66 16 40 H 0.15 6.26 8.06 -2.91 -0.02 6.24 16 41 H 0.14 4.27 8.06 -2.91 -0.02 4.24 16 42 H 0.15 3.80 8.06 -2.91 -0.02 3.78 16 43 H 0.14 4.33 8.06 -2.91 -0.02 4.31 16 44 H 0.10 4.92 6.77 -2.91 -0.02 4.90 16 45 H 0.27 15.38 6.92 -92.71 -0.64 14.74 16 46 H 0.43 2.62 9.10 -74.06 -0.67 1.95 16 Total: -1.00 -68.97 378.00 3.92 -65.04 By element: Atomic # 1 Polarization: 49.84 SS G_CDS: 0.10 Total: 49.94 kcal Atomic # 6 Polarization: -23.03 SS G_CDS: 5.30 Total: -17.73 kcal Atomic # 7 Polarization: -87.41 SS G_CDS: -3.15 Total: -90.57 kcal Atomic # 8 Polarization: -50.74 SS G_CDS: -0.38 Total: -51.12 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.06 Total: 44.44 kcal Total: -68.97 3.92 -65.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001602942672.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.446 kcal (2) G-P(sol) polarization free energy of solvation -68.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds