Wall clock time and date at job start Wed Apr 1 2020 02:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47171 * 2 1 4 4 C 1.53003 * 109.46674 * 119.99555 * 2 1 3 5 5 H 1.08996 * 109.47142 * 300.00234 * 4 2 1 6 6 C 1.53002 * 109.46958 * 60.00314 * 4 2 1 7 7 N 1.46504 * 109.46957 * 182.66825 * 6 4 2 8 8 C 1.34771 * 119.99705 * 185.27539 * 7 6 4 9 9 O 1.21658 * 120.00398 * 5.88797 * 8 7 6 10 10 C 1.46895 * 119.99647 * 185.88221 * 8 7 6 11 11 C 1.36119 * 125.43351 * 173.80142 * 10 8 7 12 12 C 1.41709 * 107.74646 * 180.24556 * 11 10 8 13 13 C 1.40018 * 133.35174 * 179.82404 * 12 11 10 14 14 C 1.36572 * 119.83025 * 179.97438 * 13 12 11 15 15 C 1.38847 * 120.60200 * 359.97438 * 14 13 12 16 16 C 1.37846 * 120.63622 * 359.97438 * 15 14 13 17 17 C 1.39088 * 119.80940 * 0.02562 * 16 15 14 18 18 N 1.37837 * 133.16403 * 180.02562 * 17 16 15 19 19 C 1.36892 * 125.61685 * 359.93971 * 18 17 16 20 20 H 1.08007 * 119.99594 * 136.13454 * 19 18 17 21 21 C 1.39013 * 120.00172 * 316.13169 * 19 18 17 22 22 N 1.31342 * 119.99643 * 337.70772 * 21 19 18 23 23 Si 1.86800 * 119.99919 * 157.43150 * 21 19 18 24 24 H 1.48500 * 109.46763 * 185.28384 * 23 21 19 25 25 H 1.48497 * 109.47226 * 305.28598 * 23 21 19 26 26 H 1.48501 * 109.46888 * 65.28628 * 23 21 19 27 27 C 1.50698 * 109.46998 * 180.02562 * 4 2 1 28 28 O 1.20834 * 120.00027 * 279.49954 * 27 4 2 29 29 O 1.34225 * 120.00215 * 99.49485 * 27 4 2 30 30 H 1.08996 * 109.47527 * 300.00446 * 1 2 3 31 31 H 1.09010 * 109.46914 * 60.00354 * 1 2 3 32 32 H 1.09000 * 109.47306 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47527 * 239.99554 * 2 1 3 34 34 H 1.08997 * 109.47014 * 179.97438 * 3 2 1 35 35 H 1.09001 * 109.47054 * 299.99861 * 3 2 1 36 36 H 1.08996 * 109.47259 * 59.99390 * 3 2 1 37 37 H 1.09003 * 109.47289 * 62.66759 * 6 4 2 38 38 H 1.09002 * 109.46835 * 302.66573 * 6 4 2 39 39 H 0.97000 * 119.99563 * 5.27751 * 7 6 4 40 40 H 1.07997 * 126.13259 * 0.02562 * 11 10 8 41 41 H 1.08006 * 120.08547 * 359.93732 * 13 12 11 42 42 H 1.08004 * 119.69738 * 180.02562 * 14 13 12 43 43 H 1.08000 * 119.68631 * 180.02562 * 15 14 13 44 44 H 1.07990 * 120.09829 * 180.02562 * 16 15 14 45 45 H 0.96998 * 120.00924 * 354.91069 * 22 21 19 46 46 H 0.96702 * 117.00372 * 180.02562 * 29 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 1 1.6765 -0.2073 2.1392 6 6 1.5299 -2.1637 1.2494 7 7 1.9649 -2.8354 2.4765 8 6 1.7220 -4.1500 2.6475 9 8 1.2386 -4.8022 1.7413 10 6 2.0409 -4.7953 3.9279 11 6 1.7347 -6.0787 4.2627 12 6 2.2082 -6.3065 5.5788 13 6 2.1772 -7.4155 6.4330 14 6 2.7318 -7.3297 7.6781 15 6 3.3280 -6.1512 8.1067 16 6 3.3717 -5.0464 7.2835 17 6 2.8136 -5.1096 6.0111 18 7 2.7036 -4.1977 4.9834 19 6 3.1678 -2.9101 5.0069 20 1 3.6891 -2.5084 4.1506 21 6 2.9681 -2.1198 6.1329 22 7 1.9997 -2.4059 6.9727 23 14 4.0820 -0.6553 6.4555 24 1 3.7459 -0.0586 7.7732 25 1 5.4981 -1.1023 6.4612 26 1 3.8874 0.3591 5.3886 27 6 3.5469 -0.7207 1.2497 28 8 4.1515 -1.5279 0.5842 29 8 4.2176 0.1765 1.9893 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0276 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6766 1.9564 0.8899 37 1 1.9318 -2.6912 0.3843 38 1 0.4409 -2.1640 1.2014 39 1 2.4278 -2.3340 3.1659 40 1 1.2197 -6.7940 3.6387 41 1 1.7154 -8.3363 6.1083 42 1 2.7071 -8.1866 8.3351 43 1 3.7624 -6.0999 9.0941 44 1 3.8380 -4.1344 7.6256 45 1 1.3782 -3.1227 6.7705 46 1 5.1833 0.1380 1.9571 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001602983176.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:40:56 Heat of formation + Delta-G solvation = -88.312596 kcal Electronic energy + Delta-G solvation = -31045.516933 eV Core-core repulsion = 26899.744926 eV Total energy + Delta-G solvation = -4145.772007 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.82410 -40.48993 -38.60030 -36.94724 -36.12954 -35.96600 -34.22845 -33.59574 -30.74622 -29.98845 -28.92977 -28.05587 -27.62648 -25.02688 -24.70826 -22.86860 -21.83869 -21.09434 -20.22346 -20.03458 -19.29966 -18.52265 -18.25956 -16.87879 -16.62739 -15.84034 -15.75743 -15.67646 -14.98302 -14.77902 -14.52020 -14.25334 -14.02628 -13.86386 -13.73169 -13.37179 -13.21216 -13.08866 -12.86171 -12.55223 -12.45315 -12.34129 -12.19504 -11.86956 -11.71800 -11.60790 -11.32968 -11.23464 -11.06171 -10.92631 -10.91932 -10.61246 -10.50755 -10.41007 -10.39208 -9.95762 -9.50148 -9.22944 -8.87813 -8.60579 -7.59499 -7.12229 -6.82911 -4.77933 1.66852 2.20952 2.56649 2.94810 2.99099 3.02164 3.05397 3.21854 3.62572 3.76732 4.15049 4.29845 4.44181 4.55101 4.65787 4.71049 4.84067 5.06145 5.14041 5.28084 5.37497 5.43440 5.53218 5.61592 5.66201 5.70948 5.77566 5.78627 5.83812 5.93916 6.02001 6.06341 6.11802 6.25607 6.35011 6.49597 6.52406 6.71242 6.82903 6.89036 6.93002 7.15928 7.33147 7.42428 7.50253 7.72168 7.74824 7.91934 8.06183 8.16074 8.57267 8.84860 9.04621 9.98424 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.012568 B = 0.004177 C = 0.003440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2227.413526 B = 6701.183727 C = 8138.448286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.081 4.081 3 C -0.151 4.151 4 C -0.090 4.090 5 H 0.111 0.889 6 C 0.127 3.873 7 N -0.731 5.731 8 C 0.598 3.402 9 O -0.555 6.555 10 C -0.020 4.020 11 C -0.164 4.164 12 C -0.129 4.129 13 C -0.080 4.080 14 C -0.160 4.160 15 C -0.134 4.134 16 C -0.082 4.082 17 C 0.073 3.927 18 N -0.265 5.265 19 C -0.455 4.455 20 H 0.097 0.903 21 C 0.034 3.966 22 N -0.813 5.813 23 Si 1.066 2.934 24 H -0.270 1.270 25 H -0.275 1.275 26 H -0.268 1.268 27 C 0.484 3.516 28 O -0.506 6.506 29 O -0.512 6.512 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.083 0.917 34 H 0.054 0.946 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.416 0.584 40 H 0.135 0.865 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.110 0.890 44 H 0.116 0.884 45 H 0.290 0.710 46 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.395 7.572 -6.160 9.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.101 4.101 3 C -0.208 4.208 4 C -0.110 4.110 5 H 0.129 0.871 6 C 0.002 3.998 7 N -0.392 5.392 8 C 0.388 3.612 9 O -0.434 6.434 10 C -0.135 4.135 11 C -0.192 4.192 12 C -0.134 4.134 13 C -0.099 4.099 14 C -0.179 4.179 15 C -0.154 4.154 16 C -0.102 4.102 17 C -0.041 4.041 18 N 0.070 4.930 19 C -0.582 4.582 20 H 0.114 0.886 21 C -0.184 4.184 22 N -0.437 5.437 23 Si 0.888 3.112 24 H -0.194 1.194 25 H -0.200 1.200 26 H -0.193 1.193 27 C 0.325 3.675 28 O -0.393 6.393 29 O -0.324 6.324 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.101 0.899 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.262 0.738 40 H 0.152 0.848 41 H 0.126 0.874 42 H 0.125 0.875 43 H 0.128 0.872 44 H 0.134 0.866 45 H 0.102 0.898 46 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 0.169 8.535 -5.906 10.381 hybrid contribution 0.575 -1.014 -0.704 1.361 sum 0.744 7.522 -6.610 10.041 Atomic orbital electron populations 1.21934 0.93453 1.02886 1.02531 1.21035 0.97103 0.96227 0.95689 1.21919 1.01105 0.95197 1.02612 1.21423 0.87803 0.98965 1.02770 0.87063 1.21333 0.99917 0.88920 0.89586 1.46714 1.61066 1.10437 1.21005 1.17183 0.77254 0.81164 0.85643 1.90718 1.46505 1.64278 1.41869 1.20221 1.06241 0.95390 0.91601 1.20421 1.08184 0.95096 0.95466 1.18016 1.05952 0.94233 0.95159 1.20130 0.99852 0.96388 0.93510 1.20330 1.03323 0.97731 0.96523 1.20603 1.02755 0.93241 0.98832 1.20126 1.00296 0.98403 0.91353 1.18445 1.04387 0.88903 0.92408 1.40104 1.35329 1.08398 1.09134 1.20319 1.42370 0.87858 1.07651 0.88587 1.26819 0.97423 1.02356 0.91814 1.70609 1.09382 1.27362 1.36393 0.83559 0.75326 0.74158 0.78158 1.19428 1.20022 1.19335 1.23295 0.91529 0.77129 0.75506 1.90733 1.70350 1.37650 1.40609 1.84585 1.26594 1.55764 1.65422 0.91917 0.91870 0.91590 0.89874 0.92695 0.91921 0.91721 0.90091 0.90034 0.73835 0.84753 0.87403 0.87509 0.87190 0.86635 0.89754 0.73325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 8.84 37.16 0.33 -1.00 16 2 C -0.08 -0.83 2.50 -90.62 -0.23 -1.05 16 3 C -0.15 -1.34 8.95 37.16 0.33 -1.01 16 4 C -0.09 -1.18 1.93 -91.77 -0.18 -1.35 16 5 H 0.11 1.40 8.14 -51.93 -0.42 0.98 16 6 C 0.13 2.02 4.61 -4.04 -0.02 2.00 16 7 N -0.73 -14.60 5.22 -61.55 -0.32 -14.92 16 8 C 0.60 13.83 7.76 -12.76 -0.10 13.73 16 9 O -0.55 -13.49 16.82 5.23 0.09 -13.40 16 10 C -0.02 -0.49 6.77 -82.25 -0.56 -1.04 16 11 C -0.16 -3.84 10.55 -39.02 -0.41 -4.25 16 12 C -0.13 -2.97 6.16 -106.89 -0.66 -3.63 16 13 C -0.08 -1.59 10.06 -39.52 -0.40 -1.99 16 14 C -0.16 -2.97 9.97 -39.96 -0.40 -3.37 16 15 C -0.13 -2.63 10.02 -39.50 -0.40 -3.02 16 16 C -0.08 -1.86 8.87 -39.41 -0.35 -2.21 16 17 C 0.07 1.77 5.54 -83.83 -0.46 1.31 16 18 N -0.27 -6.57 2.51 -56.08 -0.14 -6.71 16 19 C -0.46 -10.85 7.67 -15.01 -0.12 -10.96 16 20 H 0.10 2.23 6.39 -52.48 -0.34 1.89 16 21 C 0.03 0.78 4.26 -17.47 -0.07 0.71 16 22 N -0.81 -20.38 12.40 55.50 0.69 -19.69 16 23 Si 1.07 19.91 29.98 -169.99 -5.10 14.81 16 24 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 25 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 26 H -0.27 -4.60 7.11 56.52 0.40 -4.19 16 27 C 0.48 7.08 5.57 36.00 0.20 7.28 16 28 O -0.51 -8.95 17.08 -18.76 -0.32 -9.27 16 29 O -0.51 -6.32 13.17 -39.24 -0.52 -6.83 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 32 H 0.07 0.61 6.37 -51.93 -0.33 0.28 16 33 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.05 0.52 7.01 -51.93 -0.36 0.16 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.08 1.40 7.73 -51.93 -0.40 0.99 16 38 H 0.08 1.19 6.29 -51.93 -0.33 0.87 16 39 H 0.42 8.48 4.05 -40.82 -0.17 8.31 16 40 H 0.13 2.90 8.06 -52.49 -0.42 2.47 16 41 H 0.11 1.84 8.06 -52.48 -0.42 1.42 16 42 H 0.11 1.63 8.06 -52.48 -0.42 1.20 16 43 H 0.11 1.83 8.06 -52.49 -0.42 1.41 16 44 H 0.12 2.68 7.04 -52.49 -0.37 2.31 16 45 H 0.29 7.78 7.38 -40.82 -0.30 7.47 16 46 H 0.41 3.45 9.10 45.56 0.41 3.86 16 LS Contribution 380.96 15.07 5.74 5.74 Total: -1.00 -30.67 380.96 -8.56 -39.24 By element: Atomic # 1 Polarization: 26.08 SS G_CDS: -5.20 Total: 20.88 kcal Atomic # 6 Polarization: -6.37 SS G_CDS: -3.48 Total: -9.85 kcal Atomic # 7 Polarization: -41.54 SS G_CDS: 0.23 Total: -41.32 kcal Atomic # 8 Polarization: -28.75 SS G_CDS: -0.75 Total: -29.50 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.10 Total: 14.81 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.67 -8.56 -39.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001602983176.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.076 kcal (2) G-P(sol) polarization free energy of solvation -30.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds