Wall clock time and date at job start Wed Apr 1 2020 02:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47171 * 2 1 4 4 C 1.53003 * 109.46674 * 119.99555 * 2 1 3 5 5 H 1.08996 * 109.47142 * 300.00234 * 4 2 1 6 6 C 1.53002 * 109.46958 * 60.00314 * 4 2 1 7 7 N 1.46504 * 109.46957 * 182.66825 * 6 4 2 8 8 C 1.34771 * 119.99705 * 185.27539 * 7 6 4 9 9 O 1.21658 * 120.00398 * 5.88797 * 8 7 6 10 10 C 1.46895 * 119.99647 * 185.88221 * 8 7 6 11 11 C 1.36119 * 125.43351 * 173.80142 * 10 8 7 12 12 C 1.41709 * 107.74646 * 180.24556 * 11 10 8 13 13 C 1.40018 * 133.35174 * 179.82404 * 12 11 10 14 14 C 1.36572 * 119.83025 * 179.97438 * 13 12 11 15 15 C 1.38847 * 120.60200 * 359.97438 * 14 13 12 16 16 C 1.37846 * 120.63622 * 359.97438 * 15 14 13 17 17 C 1.39088 * 119.80940 * 0.02562 * 16 15 14 18 18 N 1.37837 * 133.16403 * 180.02562 * 17 16 15 19 19 C 1.36892 * 125.61685 * 359.93971 * 18 17 16 20 20 H 1.08007 * 119.99594 * 136.13454 * 19 18 17 21 21 C 1.39013 * 120.00172 * 316.13169 * 19 18 17 22 22 N 1.31342 * 119.99643 * 337.70772 * 21 19 18 23 23 Si 1.86800 * 119.99919 * 157.43150 * 21 19 18 24 24 H 1.48500 * 109.46763 * 185.28384 * 23 21 19 25 25 H 1.48497 * 109.47226 * 305.28598 * 23 21 19 26 26 H 1.48501 * 109.46888 * 65.28628 * 23 21 19 27 27 C 1.50698 * 109.46998 * 180.02562 * 4 2 1 28 28 O 1.20834 * 120.00027 * 279.49954 * 27 4 2 29 29 O 1.34225 * 120.00215 * 99.49485 * 27 4 2 30 30 H 1.08996 * 109.47527 * 300.00446 * 1 2 3 31 31 H 1.09010 * 109.46914 * 60.00354 * 1 2 3 32 32 H 1.09000 * 109.47306 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47527 * 239.99554 * 2 1 3 34 34 H 1.08997 * 109.47014 * 179.97438 * 3 2 1 35 35 H 1.09001 * 109.47054 * 299.99861 * 3 2 1 36 36 H 1.08996 * 109.47259 * 59.99390 * 3 2 1 37 37 H 1.09003 * 109.47289 * 62.66759 * 6 4 2 38 38 H 1.09002 * 109.46835 * 302.66573 * 6 4 2 39 39 H 0.97000 * 119.99563 * 5.27751 * 7 6 4 40 40 H 1.07997 * 126.13259 * 0.02562 * 11 10 8 41 41 H 1.08006 * 120.08547 * 359.93732 * 13 12 11 42 42 H 1.08004 * 119.69738 * 180.02562 * 14 13 12 43 43 H 1.08000 * 119.68631 * 180.02562 * 15 14 13 44 44 H 1.07990 * 120.09829 * 180.02562 * 16 15 14 45 45 H 0.96998 * 120.00924 * 354.91069 * 22 21 19 46 46 H 0.96702 * 117.00372 * 180.02562 * 29 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 1 1.6765 -0.2073 2.1392 6 6 1.5299 -2.1637 1.2494 7 7 1.9649 -2.8354 2.4765 8 6 1.7220 -4.1500 2.6475 9 8 1.2386 -4.8022 1.7413 10 6 2.0409 -4.7953 3.9279 11 6 1.7347 -6.0787 4.2627 12 6 2.2082 -6.3065 5.5788 13 6 2.1772 -7.4155 6.4330 14 6 2.7318 -7.3297 7.6781 15 6 3.3280 -6.1512 8.1067 16 6 3.3717 -5.0464 7.2835 17 6 2.8136 -5.1096 6.0111 18 7 2.7036 -4.1977 4.9834 19 6 3.1678 -2.9101 5.0069 20 1 3.6891 -2.5084 4.1506 21 6 2.9681 -2.1198 6.1329 22 7 1.9997 -2.4059 6.9727 23 14 4.0820 -0.6553 6.4555 24 1 3.7459 -0.0586 7.7732 25 1 5.4981 -1.1023 6.4612 26 1 3.8874 0.3591 5.3886 27 6 3.5469 -0.7207 1.2497 28 8 4.1515 -1.5279 0.5842 29 8 4.2176 0.1765 1.9893 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0276 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6766 1.9564 0.8899 37 1 1.9318 -2.6912 0.3843 38 1 0.4409 -2.1640 1.2014 39 1 2.4278 -2.3340 3.1659 40 1 1.2197 -6.7940 3.6387 41 1 1.7154 -8.3363 6.1083 42 1 2.7071 -8.1866 8.3351 43 1 3.7624 -6.0999 9.0941 44 1 3.8380 -4.1344 7.6256 45 1 1.3782 -3.1227 6.7705 46 1 5.1833 0.1380 1.9571 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001602983176.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:40:55 Heat of formation + Delta-G solvation = -106.200678 kcal Electronic energy + Delta-G solvation = -31046.292618 eV Core-core repulsion = 26899.744926 eV Total energy + Delta-G solvation = -4146.547692 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.48210 -41.74089 -40.26612 -38.03008 -37.79281 -37.10035 -35.82066 -35.22735 -32.47242 -31.34824 -30.51142 -29.63465 -28.41207 -26.70585 -26.14807 -24.32446 -22.97004 -22.77259 -21.85634 -21.45443 -20.73957 -20.14594 -19.38632 -18.29760 -17.97501 -17.51083 -17.26140 -16.98881 -16.62387 -16.37720 -15.87961 -15.74010 -15.49110 -15.18195 -14.89196 -14.81351 -14.66055 -14.53855 -14.27462 -13.98097 -13.82776 -13.53544 -13.50048 -13.05709 -12.85145 -12.76568 -12.68262 -12.49831 -12.26288 -12.20143 -12.15017 -11.97007 -11.95091 -11.74191 -11.59528 -11.53585 -11.26494 -10.95147 -10.61388 -10.22531 -9.40413 -8.88142 -8.57025 -6.63316 -0.04794 0.93154 1.05237 1.22118 1.48787 1.54258 1.75686 1.96594 2.07997 2.18763 2.37366 2.59103 2.84977 3.16497 3.34369 3.61899 3.83361 3.89437 4.06796 4.12192 4.23214 4.25341 4.30602 4.39249 4.49624 4.55347 4.59267 4.66051 4.68097 4.81634 4.83432 4.93124 4.97490 5.04608 5.12219 5.13716 5.23023 5.28323 5.34237 5.37144 5.39641 5.50790 5.63609 5.71155 5.80485 5.99803 6.03448 6.37811 6.41894 6.79772 6.88270 7.09265 7.25254 8.09918 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.012568 B = 0.004177 C = 0.003440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2227.413526 B = 6701.183727 C = 8138.448286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.076 4.076 3 C -0.148 4.148 4 C -0.086 4.086 5 H 0.120 0.880 6 C 0.124 3.876 7 N -0.724 5.724 8 C 0.591 3.409 9 O -0.577 6.577 10 C -0.050 4.050 11 C -0.173 4.173 12 C -0.149 4.149 13 C -0.083 4.083 14 C -0.151 4.151 15 C -0.119 4.119 16 C -0.114 4.114 17 C 0.049 3.951 18 N -0.281 5.281 19 C -0.466 4.466 20 H 0.096 0.904 21 C 0.007 3.993 22 N -0.832 5.832 23 Si 1.107 2.893 24 H -0.274 1.274 25 H -0.268 1.268 26 H -0.239 1.239 27 C 0.486 3.514 28 O -0.544 6.544 29 O -0.506 6.506 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.056 0.944 33 H 0.077 0.923 34 H 0.046 0.954 35 H 0.081 0.919 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.096 0.904 39 H 0.414 0.586 40 H 0.145 0.855 41 H 0.139 0.861 42 H 0.153 0.847 43 H 0.144 0.856 44 H 0.101 0.899 45 H 0.269 0.731 46 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.649 8.222 -5.341 9.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.095 4.095 3 C -0.205 4.205 4 C -0.105 4.105 5 H 0.138 0.862 6 C 0.001 3.999 7 N -0.383 5.383 8 C 0.380 3.620 9 O -0.458 6.458 10 C -0.164 4.164 11 C -0.201 4.201 12 C -0.154 4.154 13 C -0.102 4.102 14 C -0.170 4.170 15 C -0.139 4.139 16 C -0.134 4.134 17 C -0.065 4.065 18 N 0.054 4.946 19 C -0.592 4.592 20 H 0.114 0.886 21 C -0.205 4.205 22 N -0.458 5.458 23 Si 0.923 3.077 24 H -0.199 1.199 25 H -0.193 1.193 26 H -0.162 1.162 27 C 0.329 3.671 28 O -0.434 6.434 29 O -0.319 6.319 30 H 0.087 0.913 31 H 0.101 0.899 32 H 0.075 0.925 33 H 0.096 0.904 34 H 0.065 0.935 35 H 0.100 0.900 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.114 0.886 39 H 0.259 0.741 40 H 0.162 0.838 41 H 0.156 0.844 42 H 0.170 0.830 43 H 0.162 0.838 44 H 0.119 0.881 45 H 0.079 0.921 46 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges 0.432 9.214 -5.101 10.541 hybrid contribution 0.525 -1.334 -0.887 1.685 sum 0.957 7.881 -5.988 9.944 Atomic orbital electron populations 1.21938 0.92202 1.02677 1.03816 1.21066 0.98043 0.96722 0.93717 1.21907 1.00581 0.94141 1.03871 1.21496 0.87055 0.97165 1.04832 0.86173 1.21539 1.00816 0.90298 0.87254 1.46715 1.60017 1.09522 1.22026 1.17230 0.77380 0.82137 0.85256 1.90679 1.47879 1.64916 1.42360 1.20596 1.07243 0.96233 0.92339 1.20677 1.08193 0.95149 0.96085 1.18398 1.06342 0.95167 0.95493 1.20565 0.99551 0.96469 0.93588 1.20830 1.01193 0.98565 0.96386 1.21092 1.00868 0.92409 0.99505 1.20219 1.02214 0.99310 0.91675 1.18900 1.05084 0.89512 0.92998 1.40254 1.36028 1.08840 1.09472 1.20519 1.42355 0.88165 1.08153 0.88647 1.28148 0.97371 1.03927 0.91054 1.70730 1.10397 1.27370 1.37256 0.83102 0.73922 0.72039 0.78637 1.19900 1.19264 1.16245 1.23554 0.92115 0.76612 0.74819 1.90723 1.71165 1.39213 1.42320 1.84543 1.28190 1.54741 1.64431 0.91348 0.89900 0.92536 0.90409 0.93497 0.90021 0.91135 0.91564 0.88578 0.74073 0.83766 0.84354 0.82962 0.83835 0.88113 0.92069 0.71342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 8.84 71.98 0.64 -1.73 16 2 C -0.08 -1.45 2.50 -10.79 -0.03 -1.48 16 3 C -0.15 -2.30 8.95 71.98 0.64 -1.66 16 4 C -0.09 -2.20 1.93 -11.54 -0.02 -2.23 16 5 H 0.12 2.88 8.14 -2.39 -0.02 2.86 16 6 C 0.12 4.04 4.61 86.38 0.40 4.44 16 7 N -0.72 -29.83 5.22 -466.87 -2.44 -32.27 16 8 C 0.59 28.45 7.76 86.51 0.67 29.12 16 9 O -0.58 -29.14 16.82 -4.22 -0.07 -29.21 16 10 C -0.05 -2.54 6.77 39.91 0.27 -2.27 16 11 C -0.17 -8.33 10.55 22.63 0.24 -8.09 16 12 C -0.15 -6.94 6.16 -21.33 -0.13 -7.07 16 13 C -0.08 -3.14 10.06 22.31 0.22 -2.91 16 14 C -0.15 -5.08 9.97 22.03 0.22 -4.86 16 15 C -0.12 -4.39 10.02 22.32 0.22 -4.16 16 16 C -0.11 -5.20 8.87 22.38 0.20 -5.00 16 17 C 0.05 2.44 5.54 39.06 0.22 2.65 16 18 N -0.28 -14.41 2.51 -331.33 -0.83 -15.24 16 19 C -0.47 -22.81 7.67 84.09 0.65 -22.16 16 20 H 0.10 4.54 6.39 -2.91 -0.02 4.53 16 21 C 0.01 0.33 4.26 84.95 0.36 0.70 16 22 N -0.83 -42.77 12.40 21.67 0.27 -42.50 16 23 Si 1.11 39.49 29.98 68.60 2.06 41.55 16 24 H -0.27 -9.95 7.11 99.48 0.71 -9.24 16 25 H -0.27 -9.19 7.11 99.48 0.71 -8.48 16 26 H -0.24 -7.37 7.11 99.48 0.71 -6.66 16 27 C 0.49 14.04 5.57 71.24 0.40 14.43 16 28 O -0.54 -19.53 17.08 21.94 0.37 -19.16 16 29 O -0.51 -11.77 13.17 -51.37 -0.68 -12.44 16 30 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 32 H 0.06 1.00 6.37 -2.39 -0.02 0.99 16 33 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.05 0.81 7.01 -2.39 -0.02 0.79 16 35 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.07 2.37 7.73 -2.39 -0.02 2.35 16 38 H 0.10 2.85 6.29 -2.39 -0.02 2.83 16 39 H 0.41 17.36 4.05 -92.71 -0.38 16.98 16 40 H 0.14 6.39 8.06 -2.91 -0.02 6.37 16 41 H 0.14 4.30 8.06 -2.91 -0.02 4.27 16 42 H 0.15 3.78 8.06 -2.91 -0.02 3.76 16 43 H 0.14 4.27 8.06 -2.91 -0.02 4.25 16 44 H 0.10 4.79 7.04 -2.92 -0.02 4.77 16 45 H 0.27 14.99 7.38 -92.71 -0.68 14.31 16 46 H 0.43 6.56 9.10 -74.06 -0.67 5.89 16 Total: -1.00 -69.40 380.96 3.92 -65.48 By element: Atomic # 1 Polarization: 55.99 SS G_CDS: 0.07 Total: 56.06 kcal Atomic # 6 Polarization: -17.44 SS G_CDS: 5.16 Total: -12.28 kcal Atomic # 7 Polarization: -87.01 SS G_CDS: -3.00 Total: -90.01 kcal Atomic # 8 Polarization: -60.43 SS G_CDS: -0.37 Total: -60.80 kcal Atomic # 14 Polarization: 39.49 SS G_CDS: 2.06 Total: 41.55 kcal Total: -69.40 3.92 -65.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001602983176.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.720 kcal (2) G-P(sol) polarization free energy of solvation -69.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds