Wall clock time and date at job start Wed Apr 1 2020 03:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47012 * 2 1 4 4 H 1.08998 * 109.47363 * 54.91833 * 3 2 1 5 5 C 1.52995 * 109.47116 * 174.92035 * 3 2 1 6 6 N 1.46500 * 109.46952 * 294.92008 * 3 2 1 7 7 C 1.46509 * 119.99848 * 271.84475 * 6 3 2 8 8 C 1.50693 * 109.46821 * 269.45909 * 7 6 3 9 9 O 1.20824 * 120.00630 * 358.14890 * 8 7 6 10 10 O 1.34233 * 119.99642 * 178.14727 * 8 7 6 11 11 C 1.34774 * 120.00183 * 91.84335 * 6 3 2 12 12 O 1.21670 * 119.99652 * 63.01956 * 11 6 3 13 13 C 1.46889 * 120.00070 * 243.01991 * 11 6 3 14 14 C 1.36124 * 125.43624 * 181.81573 * 13 11 6 15 15 C 1.41693 * 107.75014 * 180.25548 * 14 13 11 16 16 C 1.40025 * 133.35275 * 179.80639 * 15 14 13 17 17 C 1.36583 * 119.82875 * 179.97438 * 16 15 14 18 18 C 1.38854 * 120.60174 * 359.95127 * 17 16 15 19 19 C 1.37844 * 120.63157 * 0.02562 * 18 17 16 20 20 C 1.39078 * 119.81672 * 0.02562 * 19 18 17 21 21 N 1.37841 * 133.16692 * 180.02562 * 20 19 18 22 22 C 1.36898 * 125.61591 * 359.96580 * 21 20 19 23 23 H 1.07997 * 120.00213 * 221.34942 * 22 21 20 24 24 C 1.39012 * 119.99958 * 41.35272 * 22 21 20 25 25 N 1.31357 * 119.99673 * 20.96103 * 24 22 21 26 26 Si 1.86793 * 120.00260 * 200.96099 * 24 22 21 27 27 H 1.48499 * 109.47385 * 180.02562 * 26 24 22 28 28 H 1.48499 * 109.47284 * 300.00028 * 26 24 22 29 29 H 1.48508 * 109.46961 * 60.00141 * 26 24 22 30 30 H 1.08998 * 109.47011 * 65.92292 * 1 2 3 31 31 H 1.08999 * 109.46785 * 185.92404 * 1 2 3 32 32 H 1.09000 * 109.47299 * 305.91928 * 1 2 3 33 33 H 1.08998 * 109.47217 * 239.99748 * 2 1 3 34 34 H 1.09002 * 109.47487 * 119.99522 * 2 1 3 35 35 H 1.09007 * 109.47004 * 184.53872 * 5 3 2 36 36 H 1.09002 * 109.47586 * 304.53808 * 5 3 2 37 37 H 1.09001 * 109.47227 * 64.54018 * 5 3 2 38 38 H 1.08993 * 109.46612 * 29.46380 * 7 6 3 39 39 H 1.09006 * 109.46692 * 149.46174 * 7 6 3 40 40 H 0.96700 * 116.99820 * 179.97438 * 10 8 7 41 41 H 1.08006 * 126.12349 * 359.96781 * 14 13 11 42 42 H 1.07992 * 120.08724 * 359.94021 * 16 15 14 43 43 H 1.08004 * 119.69458 * 179.97438 * 17 16 15 44 44 H 1.08002 * 119.67990 * 180.02562 * 18 17 16 45 45 H 1.08001 * 120.09014 * 179.97438 * 19 18 17 46 46 H 0.96995 * 120.00279 * 0.50115 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6043 1.9820 0.8409 5 6 3.5646 1.4444 0.1277 6 7 1.6540 2.0969 -1.2526 7 6 2.5271 2.0063 -2.4257 8 6 3.4911 3.1646 -2.4249 9 8 3.4310 4.0001 -1.5541 10 8 4.4166 3.2681 -3.3916 11 6 0.4958 2.7821 -1.3260 12 8 0.3263 3.7664 -0.6311 13 6 -0.5618 2.3407 -2.2447 14 6 -1.7557 2.9669 -2.4331 15 6 -2.4874 2.2228 -3.3916 16 6 -3.7544 2.3790 -3.9667 17 6 -4.1981 1.4746 -4.8890 18 6 -3.4033 0.3995 -5.2638 19 6 -2.1523 0.2248 -4.7120 20 6 -1.6791 1.1321 -3.7700 21 7 -0.5025 1.2249 -3.0580 22 6 0.5497 0.3530 -3.1399 23 1 1.0684 0.0469 -2.2435 24 6 0.9505 -0.1384 -4.3769 25 7 0.6303 0.5072 -5.4751 26 14 1.9445 -1.7168 -4.4775 27 1 2.2445 -2.0231 -5.8993 28 1 3.2160 -1.5496 -3.7288 29 1 1.1636 -2.8321 -3.8844 30 1 -0.3633 0.4192 -0.9382 31 1 -0.3633 -1.0222 0.1061 32 1 -0.3634 0.6029 0.8322 33 1 1.8934 -0.5139 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 3.9211 2.4714 0.2088 36 1 3.8554 0.8875 1.0185 37 1 4.0036 0.9759 -0.7531 38 1 3.0840 1.0700 -2.3925 39 1 1.9223 2.0376 -3.3320 40 1 5.0125 4.0285 -3.3492 41 1 -2.0879 3.8669 -1.9369 42 1 -4.3795 3.2122 -3.6814 43 1 -5.1760 1.5969 -5.3309 44 1 -3.7688 -0.3066 -5.9948 45 1 -1.5416 -0.6147 -5.0096 46 1 0.1205 1.3307 -5.4225 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609904487.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:13:00 Heat of formation + Delta-G solvation = -60.397089 kcal Electronic energy + Delta-G solvation = -32819.976961 eV Core-core repulsion = 28675.415462 eV Total energy + Delta-G solvation = -4144.561499 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.62949 -41.43363 -40.34461 -38.11785 -37.67039 -36.99617 -35.52389 -34.06497 -32.33396 -31.41332 -30.41547 -29.89189 -29.19865 -26.43677 -25.27040 -24.23191 -23.16019 -22.73758 -22.20254 -21.34501 -20.35682 -19.78975 -19.11990 -18.42381 -17.71273 -17.49627 -17.22435 -16.68995 -16.59248 -16.41315 -15.87887 -15.55767 -15.18073 -15.09232 -14.78844 -14.64569 -14.45167 -14.41464 -14.11445 -13.95844 -13.69541 -13.47978 -13.23853 -13.11250 -12.70835 -12.62060 -12.50943 -12.43405 -12.23715 -12.10427 -12.04163 -11.94473 -11.93413 -11.65350 -11.57636 -11.46195 -11.25375 -10.78555 -10.49475 -9.48278 -9.20244 -8.77082 -8.47000 -6.30706 -0.12998 0.97681 1.05471 1.16426 1.56924 1.63674 1.72042 1.82311 2.23304 2.28376 2.47737 2.70654 2.96301 3.24045 3.65980 3.87218 4.08141 4.10820 4.15766 4.17744 4.35398 4.36260 4.44616 4.45670 4.57139 4.61772 4.66265 4.71796 4.74210 4.84102 4.91446 4.99171 5.06738 5.10843 5.21100 5.24512 5.26534 5.36232 5.45204 5.56929 5.64953 5.78592 5.86940 5.91313 5.92855 6.08526 6.14770 6.25877 6.48515 6.80764 7.00036 7.04416 7.40149 8.28869 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.010555 B = 0.005882 C = 0.005019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2652.015116 B = 4759.544706 C = 5577.534361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.129 4.129 3 C 0.156 3.844 4 H 0.062 0.938 5 C -0.156 4.156 6 N -0.647 5.647 7 C 0.154 3.846 8 C 0.452 3.548 9 O -0.535 6.535 10 O -0.510 6.510 11 C 0.638 3.362 12 O -0.529 6.529 13 C -0.058 4.058 14 C -0.190 4.190 15 C -0.148 4.148 16 C -0.090 4.090 17 C -0.151 4.151 18 C -0.129 4.129 19 C -0.101 4.101 20 C 0.038 3.962 21 N -0.251 5.251 22 C -0.439 4.439 23 H 0.139 0.861 24 C -0.003 4.003 25 N -0.843 5.843 26 Si 1.101 2.899 27 H -0.284 1.284 28 H -0.239 1.239 29 H -0.268 1.268 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.036 0.964 33 H 0.076 0.924 34 H 0.100 0.900 35 H 0.046 0.954 36 H 0.097 0.903 37 H 0.068 0.932 38 H 0.137 0.863 39 H 0.110 0.890 40 H 0.423 0.577 41 H 0.132 0.868 42 H 0.130 0.870 43 H 0.145 0.855 44 H 0.138 0.862 45 H 0.104 0.896 46 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.535 -4.903 3.292 7.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.167 4.167 3 C 0.054 3.946 4 H 0.080 0.920 5 C -0.213 4.213 6 N -0.385 5.385 7 C 0.029 3.971 8 C 0.293 3.707 9 O -0.425 6.425 10 O -0.323 6.323 11 C 0.432 3.568 12 O -0.404 6.404 13 C -0.174 4.174 14 C -0.218 4.218 15 C -0.152 4.152 16 C -0.109 4.109 17 C -0.169 4.169 18 C -0.149 4.149 19 C -0.121 4.121 20 C -0.077 4.077 21 N 0.086 4.914 22 C -0.565 4.565 23 H 0.156 0.844 24 C -0.214 4.214 25 N -0.470 5.470 26 Si 0.919 3.081 27 H -0.210 1.210 28 H -0.162 1.162 29 H -0.193 1.193 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.055 0.945 33 H 0.094 0.906 34 H 0.118 0.882 35 H 0.066 0.934 36 H 0.116 0.884 37 H 0.087 0.913 38 H 0.154 0.846 39 H 0.128 0.872 40 H 0.284 0.716 41 H 0.150 0.850 42 H 0.148 0.852 43 H 0.163 0.837 44 H 0.156 0.844 45 H 0.122 0.878 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.234 -5.662 2.851 8.221 hybrid contribution -0.674 2.160 0.879 2.428 sum 4.560 -3.502 3.730 6.854 Atomic orbital electron populations 1.21997 0.97186 1.01550 1.01657 1.22052 0.95285 0.95650 1.03704 1.21121 0.96698 0.92671 0.84110 0.91960 1.22156 0.92833 1.02329 1.04010 1.46442 1.19762 1.59606 1.12684 1.20774 0.90725 0.94701 0.90887 1.25001 0.80069 0.87698 0.77915 1.90708 1.70748 1.42728 1.38272 1.84543 1.44705 1.52661 1.50351 1.17287 0.81208 0.79557 0.78748 1.90664 1.81706 1.23708 1.44308 1.20589 0.98630 0.92697 1.05485 1.20635 0.95239 1.02154 1.03760 1.18313 0.96829 0.98092 1.02002 1.20494 0.93407 0.99789 0.97168 1.20755 1.00890 0.95541 0.99756 1.21019 0.93505 0.99459 1.00909 1.20220 0.96635 0.98512 0.96775 1.18777 0.87365 0.99887 1.01638 1.40290 1.10112 1.15226 1.25803 1.21551 1.11968 1.23878 0.99134 0.84428 1.27944 0.98737 1.04549 0.90134 1.70768 1.30267 1.14916 1.31045 0.83133 0.76572 0.70921 0.77487 1.20979 1.16181 1.19306 0.92771 0.92084 0.94468 0.90553 0.88176 0.93437 0.88426 0.91280 0.84552 0.87201 0.71607 0.85006 0.85210 0.83682 0.84405 0.87802 0.91948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.48 8.89 71.98 0.64 -4.84 16 2 C -0.13 -3.48 4.94 30.60 0.15 -3.33 16 3 C 0.16 4.80 2.78 44.99 0.13 4.92 16 4 H 0.06 2.12 7.93 -2.39 -0.02 2.10 16 5 C -0.16 -3.83 8.08 71.98 0.58 -3.25 16 6 N -0.65 -24.22 0.76 -806.59 -0.61 -24.83 16 7 C 0.15 5.44 3.33 85.63 0.29 5.73 16 8 C 0.45 15.45 7.51 71.23 0.53 15.98 16 9 O -0.54 -21.45 15.84 21.97 0.35 -21.10 16 10 O -0.51 -13.75 13.42 -51.44 -0.69 -14.44 16 11 C 0.64 28.72 5.39 86.51 0.47 29.18 16 12 O -0.53 -26.62 17.57 -4.25 -0.07 -26.69 16 13 C -0.06 -2.71 5.12 39.91 0.20 -2.51 16 14 C -0.19 -8.84 10.55 22.63 0.24 -8.61 16 15 C -0.15 -6.65 6.16 -21.34 -0.13 -6.78 16 16 C -0.09 -3.39 10.06 22.32 0.22 -3.16 16 17 C -0.15 -5.09 9.97 22.03 0.22 -4.87 16 18 C -0.13 -4.69 10.02 22.32 0.22 -4.46 16 19 C -0.10 -4.41 8.57 22.38 0.19 -4.22 16 20 C 0.04 1.77 5.42 39.06 0.21 1.98 16 21 N -0.25 -11.50 1.98 -331.34 -0.66 -12.16 16 22 C -0.44 -18.48 4.67 84.09 0.39 -18.09 16 23 H 0.14 5.29 2.38 -2.91 -0.01 5.29 16 24 C 0.00 -0.12 3.96 84.95 0.34 0.21 16 25 N -0.84 -40.31 12.23 21.67 0.27 -40.05 16 26 Si 1.10 36.29 29.97 68.60 2.06 38.34 16 27 H -0.28 -10.00 7.11 99.48 0.71 -9.30 16 28 H -0.24 -6.51 7.11 99.48 0.71 -5.81 16 29 H -0.27 -8.53 7.11 99.48 0.71 -7.82 16 30 H 0.05 2.15 3.17 -2.39 -0.01 2.14 16 31 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.08 2.06 6.31 -2.39 -0.02 2.05 16 34 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.05 1.38 6.82 -2.38 -0.02 1.36 16 36 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.07 1.54 6.32 -2.39 -0.02 1.53 16 38 H 0.14 4.04 6.62 -2.39 -0.02 4.02 16 39 H 0.11 4.60 5.56 -2.38 -0.01 4.59 16 40 H 0.42 7.34 9.10 -74.06 -0.67 6.67 16 41 H 0.13 5.86 8.06 -2.91 -0.02 5.83 16 42 H 0.13 4.16 8.06 -2.91 -0.02 4.14 16 43 H 0.15 3.74 8.06 -2.91 -0.02 3.72 16 44 H 0.14 4.13 8.06 -2.91 -0.02 4.10 16 45 H 0.10 4.70 6.78 -2.91 -0.02 4.68 16 46 H 0.27 14.07 6.80 -92.71 -0.63 13.44 16 Total: -1.00 -63.54 361.10 6.04 -57.49 By element: Atomic # 1 Polarization: 49.02 SS G_CDS: 0.52 Total: 49.54 kcal Atomic # 6 Polarization: -11.00 SS G_CDS: 4.89 Total: -6.10 kcal Atomic # 7 Polarization: -76.03 SS G_CDS: -1.01 Total: -77.04 kcal Atomic # 8 Polarization: -61.82 SS G_CDS: -0.42 Total: -62.24 kcal Atomic # 14 Polarization: 36.29 SS G_CDS: 2.06 Total: 38.34 kcal Total: -63.54 6.04 -57.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609904487.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.905 kcal (2) G-P(sol) polarization free energy of solvation -63.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds