Wall clock time and date at job start Wed Apr 1 2020 03:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47096 * 2 1 4 4 N 1.46497 * 109.47135 * 120.00215 * 2 1 3 5 5 C 1.33873 * 122.76350 * 300.00138 * 4 2 1 6 6 O 1.21221 * 125.39640 * 0.02562 * 5 4 2 7 7 C 1.51679 * 109.24016 * 179.91851 * 5 4 2 8 8 C 1.54226 * 103.38451 * 0.12013 * 7 5 4 9 9 H 1.08994 * 110.60923 * 241.29343 * 8 7 5 10 10 N 1.46501 * 110.60385 * 118.48039 * 8 7 5 11 11 C 1.34776 * 119.99987 * 157.14893 * 10 8 7 12 12 O 1.21284 * 120.00009 * 0.02562 * 11 10 8 13 13 C 1.50703 * 120.00151 * 179.97438 * 11 10 8 14 14 H 1.09001 * 109.47109 * 300.00418 * 13 11 10 15 15 C 1.50703 * 109.46649 * 60.00348 * 13 11 10 16 16 H 1.08001 * 119.99708 * 235.33344 * 15 13 11 17 17 C 1.37875 * 120.00194 * 55.33146 * 15 13 11 18 18 N 1.31515 * 119.99977 * 1.97016 * 17 15 13 19 19 Si 1.86800 * 119.99943 * 181.96583 * 17 15 13 20 20 H 1.48501 * 109.47294 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47146 * 119.99907 * 19 17 15 22 22 H 1.48501 * 109.47425 * 240.00138 * 19 17 15 23 23 C 1.50698 * 109.47012 * 179.97438 * 13 11 10 24 24 C 1.38233 * 119.99902 * 47.23484 * 23 13 11 25 25 C 1.38236 * 119.99916 * 180.25371 * 24 23 13 26 26 C 1.38234 * 119.99816 * 359.52656 * 25 24 23 27 27 C 1.38231 * 120.00057 * 0.42583 * 26 25 24 28 28 C 1.38229 * 119.99882 * 227.20279 * 23 13 11 29 29 C 1.33880 * 122.75829 * 119.99886 * 4 2 1 30 30 O 1.21224 * 125.40092 * 359.97438 * 29 4 2 31 31 H 1.08993 * 109.47432 * 300.00114 * 1 2 3 32 32 H 1.09007 * 109.46972 * 59.99853 * 1 2 3 33 33 H 1.09003 * 109.47131 * 179.97438 * 1 2 3 34 34 H 1.09007 * 109.47229 * 240.00423 * 2 1 3 35 35 H 1.08997 * 109.47076 * 179.97438 * 3 2 1 36 36 H 1.08993 * 109.47517 * 300.00434 * 3 2 1 37 37 H 1.09007 * 109.46736 * 60.00121 * 3 2 1 38 38 H 1.09002 * 110.71697 * 241.64621 * 7 5 4 39 39 H 1.09000 * 110.65418 * 118.56979 * 7 5 4 40 40 H 0.96994 * 120.00202 * 337.14433 * 10 8 7 41 41 H 0.96999 * 119.99919 * 180.02562 * 18 17 15 42 42 H 1.07999 * 120.00100 * 359.96995 * 24 23 13 43 43 H 1.08003 * 119.99970 * 179.72041 * 25 24 23 44 44 H 1.08010 * 120.00160 * 180.21306 * 26 25 24 45 45 H 1.08003 * 119.99964 * 179.78451 * 27 26 25 46 46 H 1.07996 * 120.00357 * 0.02562 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.7291 -0.2817 2.4376 6 8 1.0480 0.6807 2.7191 7 6 2.3862 -1.2146 3.4369 8 6 3.1137 -2.2398 2.5434 9 1 2.7273 -3.2438 2.7186 10 7 4.5587 -2.1965 2.7803 11 6 5.3228 -3.2660 2.4824 12 8 4.8141 -4.2642 2.0178 13 6 6.8094 -3.2213 2.7256 14 1 7.2489 -2.4128 2.1414 15 6 7.0718 -2.9831 4.1903 16 1 7.6870 -2.1513 4.5004 17 6 6.5265 -3.8269 5.1346 18 7 5.8094 -4.8621 4.7555 19 14 6.8063 -3.4997 6.9523 20 1 7.6405 -2.2817 7.1134 21 1 5.4985 -3.2960 7.6257 22 1 7.5020 -4.6609 7.5630 23 6 7.4257 -4.5330 2.3122 24 6 7.0987 -5.0965 1.0931 25 6 7.6599 -6.3023 0.7162 26 6 8.5557 -6.9396 1.5543 27 6 8.8834 -6.3756 2.7729 28 6 8.3184 -5.1722 3.1519 29 6 2.7905 -1.7827 1.1375 30 8 3.1703 -2.3205 0.1196 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8934 -0.5138 -0.8901 35 1 3.1300 1.4425 0.0005 36 1 1.6767 1.9564 -0.8899 37 1 1.6766 1.9563 0.8901 38 1 1.6360 -1.7082 4.0547 39 1 3.0995 -0.6723 4.0577 40 1 4.9657 -1.3981 3.1515 41 1 5.4255 -5.4555 5.4198 42 1 6.4012 -4.5971 0.4370 43 1 7.4010 -6.7448 -0.2343 44 1 8.9969 -7.8800 1.2583 45 1 9.5807 -6.8752 3.4292 46 1 8.5740 -4.7319 4.1044 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001634877017.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:23:00 Heat of formation + Delta-G solvation = -70.466652 kcal Electronic energy + Delta-G solvation = -31075.917160 eV Core-core repulsion = 26930.919011 eV Total energy + Delta-G solvation = -4144.998148 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.00543 -39.08848 -38.44617 -37.45184 -36.02775 -35.42383 -33.67923 -32.83681 -30.87940 -29.81477 -29.66326 -27.45516 -27.33960 -25.57117 -23.94089 -23.04677 -21.94608 -21.25062 -20.60923 -19.55834 -18.99950 -17.23285 -17.05337 -16.77745 -16.46647 -15.80653 -15.27301 -14.99500 -14.91754 -14.83832 -14.34211 -14.20669 -14.00220 -13.86231 -13.64616 -13.29792 -13.21170 -12.99592 -12.61383 -12.53138 -12.28586 -12.22240 -12.13054 -11.96090 -11.66615 -11.57200 -11.45229 -11.31908 -11.04511 -10.79667 -10.53565 -10.42523 -10.05981 -9.97215 -9.76238 -9.71101 -9.41781 -8.78850 -8.43202 -8.31427 -7.69068 -7.41656 -6.20596 -4.37582 1.54514 2.45967 2.53316 2.61746 2.71208 3.13850 3.25740 3.26537 3.84944 3.93590 4.21182 4.30112 4.41206 4.47535 4.70264 4.80103 4.94206 5.00843 5.06703 5.13256 5.19386 5.37609 5.55307 5.59302 5.60106 5.72338 5.81463 5.86612 5.97660 5.98658 6.00582 6.06204 6.34879 6.47399 6.68349 6.75556 6.84668 6.86846 7.11578 7.16292 7.21222 7.34182 7.56260 7.62295 7.64129 7.74981 7.84763 8.14465 8.24953 8.38899 8.68839 9.29531 9.51683 10.79679 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.013154 B = 0.003816 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.127103 B = 7334.871216 C = 8907.817694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.120 3.880 3 C -0.166 4.166 4 N -0.571 5.571 5 C 0.533 3.467 6 O -0.487 6.487 7 C -0.165 4.165 8 C 0.125 3.875 9 H 0.133 0.867 10 N -0.719 5.719 11 C 0.554 3.446 12 O -0.527 6.527 13 C 0.059 3.941 14 H 0.058 0.942 15 C -0.541 4.541 16 H 0.069 0.931 17 C 0.075 3.925 18 N -0.842 5.842 19 Si 0.886 3.114 20 H -0.271 1.271 21 H -0.283 1.283 22 H -0.282 1.282 23 C -0.016 4.016 24 C -0.100 4.100 25 C -0.144 4.144 26 C -0.144 4.144 27 C -0.148 4.148 28 C -0.064 4.064 29 C 0.511 3.489 30 O -0.460 6.460 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.059 0.941 34 H 0.102 0.898 35 H 0.060 0.940 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.126 0.874 39 H 0.128 0.872 40 H 0.403 0.597 41 H 0.265 0.735 42 H 0.108 0.892 43 H 0.101 0.899 44 H 0.100 0.900 45 H 0.101 0.899 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.837 8.269 -4.623 11.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.019 3.981 3 C -0.223 4.223 4 N -0.316 5.316 5 C 0.323 3.677 6 O -0.360 6.360 7 C -0.205 4.205 8 C 0.015 3.985 9 H 0.150 0.850 10 N -0.375 5.375 11 C 0.343 3.657 12 O -0.400 6.400 13 C 0.038 3.962 14 H 0.076 0.924 15 C -0.579 4.579 16 H 0.087 0.913 17 C -0.133 4.133 18 N -0.474 5.474 19 Si 0.713 3.287 20 H -0.195 1.195 21 H -0.209 1.209 22 H -0.208 1.208 23 C -0.017 4.017 24 C -0.118 4.118 25 C -0.162 4.162 26 C -0.162 4.162 27 C -0.167 4.167 28 C -0.082 4.082 29 C 0.297 3.703 30 O -0.328 6.328 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.078 0.922 34 H 0.120 0.880 35 H 0.079 0.921 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.145 0.855 39 H 0.146 0.854 40 H 0.238 0.762 41 H 0.075 0.925 42 H 0.127 0.873 43 H 0.119 0.881 44 H 0.118 0.882 45 H 0.119 0.881 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -6.457 7.536 -5.357 11.277 hybrid contribution 0.025 0.226 1.307 1.326 sum -6.433 7.762 -4.050 10.864 Atomic orbital electron populations 1.22159 0.93759 1.02753 1.03684 1.21358 0.95351 0.93978 0.87445 1.22156 1.01686 0.94852 1.03655 1.47066 1.47345 1.28257 1.08980 1.20843 0.78909 0.84429 0.83559 1.90709 1.36486 1.26733 1.82030 1.22913 1.02337 0.96931 0.98287 1.21317 0.86238 1.01890 0.89103 0.84966 1.45790 1.03437 1.19498 1.68732 1.21226 0.90362 0.80715 0.73387 1.90581 1.74898 1.31045 1.43523 1.17864 0.87675 0.92609 0.98055 0.92383 1.20750 1.34434 1.14420 0.88279 0.91313 1.25055 0.94706 0.94602 0.98964 1.70081 1.30722 1.12829 1.33793 0.86615 0.78183 0.78560 0.85298 1.19498 1.20897 1.20811 1.19762 0.93835 0.96500 0.91638 1.21015 0.97919 0.95761 0.97078 1.20828 0.99293 0.96721 0.99337 1.20782 1.00275 0.99468 0.95663 1.20986 1.01819 0.97300 0.96548 1.21129 0.94886 0.93313 0.98877 1.21856 0.76193 0.78631 0.93587 1.90755 1.49723 1.56262 1.36053 0.90776 0.90894 0.92228 0.87960 0.92120 0.90911 0.90782 0.85547 0.85425 0.76212 0.92457 0.87344 0.88086 0.88218 0.88054 0.85440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.62 9.17 37.16 0.34 -1.28 16 2 C 0.12 1.36 3.31 -67.93 -0.22 1.13 16 3 C -0.17 -1.65 9.17 37.16 0.34 -1.31 16 4 N -0.57 -7.39 2.48 -108.10 -0.27 -7.66 16 5 C 0.53 6.64 7.43 -10.91 -0.08 6.56 16 6 O -0.49 -6.80 14.82 5.61 0.08 -6.72 16 7 C -0.16 -1.86 6.81 -26.76 -0.18 -2.04 16 8 C 0.12 1.90 3.40 -68.14 -0.23 1.67 16 9 H 0.13 2.23 7.62 -51.93 -0.40 1.84 16 10 N -0.72 -12.66 5.03 -54.01 -0.27 -12.93 16 11 C 0.55 12.24 5.45 -10.98 -0.06 12.18 16 12 O -0.53 -13.36 13.64 5.55 0.08 -13.29 16 13 C 0.06 1.32 2.78 -94.07 -0.26 1.06 16 14 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 15 C -0.54 -12.32 7.12 -34.44 -0.25 -12.57 16 16 H 0.07 1.53 7.81 -52.49 -0.41 1.12 16 17 C 0.07 1.76 3.99 -17.82 -0.07 1.69 16 18 N -0.84 -21.53 10.89 55.43 0.60 -20.93 16 19 Si 0.89 18.62 29.54 -169.99 -5.02 13.60 16 20 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 21 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 22 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 23 C -0.02 -0.38 4.52 -104.63 -0.47 -0.85 16 24 C -0.10 -2.25 8.21 -39.58 -0.33 -2.58 16 25 C -0.14 -2.96 10.05 -39.58 -0.40 -3.35 16 26 C -0.14 -2.83 10.05 -39.59 -0.40 -3.23 16 27 C -0.15 -3.06 10.05 -39.58 -0.40 -3.46 16 28 C -0.06 -1.46 8.20 -39.58 -0.32 -1.79 16 29 C 0.51 8.02 7.73 -11.08 -0.09 7.94 16 30 O -0.46 -8.89 17.23 5.61 0.10 -8.79 16 31 H 0.07 0.80 6.64 -51.93 -0.35 0.46 16 32 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.10 1.21 7.41 -51.92 -0.38 0.82 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.82 6.65 -51.92 -0.35 0.47 16 38 H 0.13 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.13 1.29 7.68 -51.93 -0.40 0.89 16 40 H 0.40 6.21 8.23 -40.82 -0.34 5.87 16 41 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 42 H 0.11 2.50 7.01 -52.49 -0.37 2.13 16 43 H 0.10 1.82 8.06 -52.48 -0.42 1.40 16 44 H 0.10 1.66 8.06 -52.48 -0.42 1.24 16 45 H 0.10 1.83 8.06 -52.48 -0.42 1.41 16 46 H 0.13 2.98 6.02 -52.49 -0.32 2.66 16 LS Contribution 378.77 15.07 5.71 5.71 Total: -1.00 -30.53 378.77 -8.31 -38.84 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: -6.24 Total: 12.41 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: -3.08 Total: -0.23 kcal Atomic # 7 Polarization: -41.59 SS G_CDS: 0.06 Total: -41.53 kcal Atomic # 8 Polarization: -29.05 SS G_CDS: 0.26 Total: -28.80 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -5.02 Total: 13.60 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.53 -8.31 -38.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001634877017.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.629 kcal (2) G-P(sol) polarization free energy of solvation -30.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds