Wall clock time and date at job start Wed Apr 1 2020 03:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47096 * 2 1 4 4 N 1.46497 * 109.47135 * 120.00215 * 2 1 3 5 5 C 1.33873 * 122.76350 * 300.00138 * 4 2 1 6 6 O 1.21221 * 125.39640 * 0.02562 * 5 4 2 7 7 C 1.51679 * 109.24016 * 179.91851 * 5 4 2 8 8 C 1.54226 * 103.38451 * 0.12013 * 7 5 4 9 9 H 1.08994 * 110.60923 * 241.29343 * 8 7 5 10 10 N 1.46501 * 110.60385 * 118.48039 * 8 7 5 11 11 C 1.34776 * 119.99987 * 157.14893 * 10 8 7 12 12 O 1.21284 * 120.00009 * 0.02562 * 11 10 8 13 13 C 1.50703 * 120.00151 * 179.97438 * 11 10 8 14 14 H 1.09001 * 109.47109 * 300.00418 * 13 11 10 15 15 C 1.50703 * 109.46649 * 60.00348 * 13 11 10 16 16 H 1.08001 * 119.99708 * 235.33344 * 15 13 11 17 17 C 1.37875 * 120.00194 * 55.33146 * 15 13 11 18 18 N 1.31515 * 119.99977 * 1.97016 * 17 15 13 19 19 Si 1.86800 * 119.99943 * 181.96583 * 17 15 13 20 20 H 1.48501 * 109.47294 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47146 * 119.99907 * 19 17 15 22 22 H 1.48501 * 109.47425 * 240.00138 * 19 17 15 23 23 C 1.50698 * 109.47012 * 179.97438 * 13 11 10 24 24 C 1.38233 * 119.99902 * 47.23484 * 23 13 11 25 25 C 1.38236 * 119.99916 * 180.25371 * 24 23 13 26 26 C 1.38234 * 119.99816 * 359.52656 * 25 24 23 27 27 C 1.38231 * 120.00057 * 0.42583 * 26 25 24 28 28 C 1.38229 * 119.99882 * 227.20279 * 23 13 11 29 29 C 1.33880 * 122.75829 * 119.99886 * 4 2 1 30 30 O 1.21224 * 125.40092 * 359.97438 * 29 4 2 31 31 H 1.08993 * 109.47432 * 300.00114 * 1 2 3 32 32 H 1.09007 * 109.46972 * 59.99853 * 1 2 3 33 33 H 1.09003 * 109.47131 * 179.97438 * 1 2 3 34 34 H 1.09007 * 109.47229 * 240.00423 * 2 1 3 35 35 H 1.08997 * 109.47076 * 179.97438 * 3 2 1 36 36 H 1.08993 * 109.47517 * 300.00434 * 3 2 1 37 37 H 1.09007 * 109.46736 * 60.00121 * 3 2 1 38 38 H 1.09002 * 110.71697 * 241.64621 * 7 5 4 39 39 H 1.09000 * 110.65418 * 118.56979 * 7 5 4 40 40 H 0.96994 * 120.00202 * 337.14433 * 10 8 7 41 41 H 0.96999 * 119.99919 * 180.02562 * 18 17 15 42 42 H 1.07999 * 120.00100 * 359.96995 * 24 23 13 43 43 H 1.08003 * 119.99970 * 179.72041 * 25 24 23 44 44 H 1.08010 * 120.00160 * 180.21306 * 26 25 24 45 45 H 1.08003 * 119.99964 * 179.78451 * 27 26 25 46 46 H 1.07996 * 120.00357 * 0.02562 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.7291 -0.2817 2.4376 6 8 1.0480 0.6807 2.7191 7 6 2.3862 -1.2146 3.4369 8 6 3.1137 -2.2398 2.5434 9 1 2.7273 -3.2438 2.7186 10 7 4.5587 -2.1965 2.7803 11 6 5.3228 -3.2660 2.4824 12 8 4.8141 -4.2642 2.0178 13 6 6.8094 -3.2213 2.7256 14 1 7.2489 -2.4128 2.1414 15 6 7.0718 -2.9831 4.1903 16 1 7.6870 -2.1513 4.5004 17 6 6.5265 -3.8269 5.1346 18 7 5.8094 -4.8621 4.7555 19 14 6.8063 -3.4997 6.9523 20 1 7.6405 -2.2817 7.1134 21 1 5.4985 -3.2960 7.6257 22 1 7.5020 -4.6609 7.5630 23 6 7.4257 -4.5330 2.3122 24 6 7.0987 -5.0965 1.0931 25 6 7.6599 -6.3023 0.7162 26 6 8.5557 -6.9396 1.5543 27 6 8.8834 -6.3756 2.7729 28 6 8.3184 -5.1722 3.1519 29 6 2.7905 -1.7827 1.1375 30 8 3.1703 -2.3205 0.1196 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8934 -0.5138 -0.8901 35 1 3.1300 1.4425 0.0005 36 1 1.6767 1.9564 -0.8899 37 1 1.6766 1.9563 0.8901 38 1 1.6360 -1.7082 4.0547 39 1 3.0995 -0.6723 4.0577 40 1 4.9657 -1.3981 3.1515 41 1 5.4255 -5.4555 5.4198 42 1 6.4012 -4.5971 0.4370 43 1 7.4010 -6.7448 -0.2343 44 1 8.9969 -7.8800 1.2583 45 1 9.5807 -6.8752 3.4292 46 1 8.5740 -4.7319 4.1044 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001634877017.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:59 Heat of formation + Delta-G solvation = -88.576495 kcal Electronic energy + Delta-G solvation = -31076.702462 eV Core-core repulsion = 26930.919011 eV Total energy + Delta-G solvation = -4145.783450 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.15786 -40.70089 -39.74538 -39.04152 -37.16611 -36.67659 -35.45738 -34.12937 -32.62059 -31.33700 -30.98947 -28.97067 -28.25763 -26.87367 -25.65843 -24.02302 -23.26736 -22.89916 -22.11868 -21.15078 -20.14704 -18.76539 -18.28789 -18.08399 -17.79008 -17.29221 -16.94943 -16.65575 -16.30814 -16.07344 -15.63150 -15.33322 -15.31038 -15.25995 -15.10702 -14.66800 -14.33750 -14.25198 -14.04957 -13.91783 -13.85229 -13.70431 -13.35954 -13.09295 -12.98724 -12.78850 -12.73971 -12.45159 -12.43852 -12.37690 -12.25763 -11.77467 -11.73508 -11.39577 -11.15881 -11.05174 -10.86214 -10.60828 -10.19202 -9.83037 -9.36781 -9.09194 -8.01886 -6.22581 0.36247 0.88812 0.94382 1.37222 1.46455 1.54472 1.55865 1.61487 2.30200 2.47884 2.59685 3.11047 3.21184 3.25051 3.28274 3.37922 3.78117 3.93644 4.04573 4.10457 4.24542 4.34947 4.36548 4.49404 4.53039 4.63868 4.66017 4.69342 4.72162 4.77924 4.81529 4.99182 5.01960 5.08091 5.12670 5.17269 5.17488 5.46668 5.55922 5.66649 5.76138 5.79342 5.91182 5.96000 6.00403 6.19927 6.44369 6.55075 6.69463 6.76194 6.97643 7.46953 7.85904 8.97344 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.013154 B = 0.003816 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.127103 B = 7334.871216 C = 8907.817694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.110 3.890 3 C -0.158 4.158 4 N -0.566 5.566 5 C 0.540 3.460 6 O -0.494 6.494 7 C -0.149 4.149 8 C 0.122 3.878 9 H 0.115 0.885 10 N -0.710 5.710 11 C 0.554 3.446 12 O -0.566 6.566 13 C 0.048 3.952 14 H 0.066 0.934 15 C -0.533 4.533 16 H 0.074 0.926 17 C 0.045 3.955 18 N -0.872 5.872 19 Si 0.941 3.059 20 H -0.261 1.261 21 H -0.283 1.283 22 H -0.293 1.293 23 C -0.035 4.035 24 C -0.119 4.119 25 C -0.148 4.148 26 C -0.141 4.141 27 C -0.151 4.151 28 C -0.084 4.084 29 C 0.517 3.483 30 O -0.503 6.503 31 H 0.065 0.935 32 H 0.097 0.903 33 H 0.054 0.946 34 H 0.095 0.905 35 H 0.053 0.947 36 H 0.097 0.903 37 H 0.065 0.935 38 H 0.153 0.847 39 H 0.147 0.853 40 H 0.414 0.586 41 H 0.257 0.743 42 H 0.093 0.907 43 H 0.125 0.875 44 H 0.137 0.863 45 H 0.127 0.873 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.924 9.125 -4.053 11.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.009 3.991 3 C -0.216 4.216 4 N -0.310 5.310 5 C 0.330 3.670 6 O -0.368 6.368 7 C -0.188 4.188 8 C 0.012 3.988 9 H 0.132 0.868 10 N -0.365 5.365 11 C 0.343 3.657 12 O -0.443 6.443 13 C 0.027 3.973 14 H 0.084 0.916 15 C -0.571 4.571 16 H 0.092 0.908 17 C -0.160 4.160 18 N -0.506 5.506 19 Si 0.768 3.232 20 H -0.185 1.185 21 H -0.209 1.209 22 H -0.220 1.220 23 C -0.036 4.036 24 C -0.137 4.137 25 C -0.166 4.166 26 C -0.158 4.158 27 C -0.169 4.169 28 C -0.102 4.102 29 C 0.304 3.696 30 O -0.374 6.374 31 H 0.084 0.916 32 H 0.115 0.885 33 H 0.073 0.927 34 H 0.113 0.887 35 H 0.072 0.928 36 H 0.115 0.885 37 H 0.084 0.916 38 H 0.170 0.830 39 H 0.165 0.835 40 H 0.251 0.749 41 H 0.067 0.933 42 H 0.111 0.889 43 H 0.143 0.857 44 H 0.155 0.845 45 H 0.145 0.855 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -6.559 8.476 -4.764 11.729 hybrid contribution 0.058 -0.008 1.059 1.061 sum -6.501 8.468 -3.704 11.300 Atomic orbital electron populations 1.22115 0.92316 1.02682 1.04484 1.21622 0.96516 0.94505 0.86455 1.22111 1.01193 0.93823 1.04463 1.47055 1.46539 1.27405 1.10029 1.20923 0.78520 0.84204 0.83334 1.90721 1.36897 1.27123 1.82012 1.22937 1.02723 0.95587 0.97586 1.21389 0.84940 1.02382 0.90098 0.86766 1.45559 1.04485 1.18754 1.67694 1.21127 0.90537 0.81022 0.72994 1.90552 1.75525 1.32776 1.45420 1.17999 0.88280 0.92881 0.98168 0.91621 1.20894 1.33674 1.14070 0.88473 0.90785 1.25528 0.94422 0.94240 1.01809 1.70242 1.32246 1.13894 1.34259 0.85759 0.77834 0.78126 0.81491 1.18493 1.20936 1.21987 1.19918 0.94383 0.97167 0.92137 1.21021 0.98556 0.97025 0.97090 1.21169 0.98932 0.95932 1.00551 1.21166 0.99395 1.00471 0.94815 1.21324 1.01704 0.96529 0.97381 1.21138 0.95887 0.94622 0.98584 1.21796 0.75896 0.78843 0.93048 1.90735 1.51581 1.57702 1.37342 0.91551 0.88454 0.92732 0.88687 0.92822 0.88463 0.91555 0.82954 0.83508 0.74915 0.93342 0.88861 0.85675 0.84503 0.85487 0.86642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.87 9.17 71.98 0.66 -2.21 16 2 C 0.11 2.38 3.31 44.99 0.15 2.53 16 3 C -0.16 -2.92 9.17 71.98 0.66 -2.26 16 4 N -0.57 -14.31 2.48 -733.77 -1.82 -16.12 16 5 C 0.54 12.57 7.43 88.11 0.65 13.23 16 6 O -0.49 -12.82 14.82 -2.85 -0.04 -12.86 16 7 C -0.15 -3.08 6.81 30.58 0.21 -2.87 16 8 C 0.12 3.70 3.40 44.86 0.15 3.85 16 9 H 0.11 3.97 7.62 -2.39 -0.02 3.95 16 10 N -0.71 -25.12 5.03 -443.17 -2.23 -27.35 16 11 C 0.55 25.07 5.45 87.66 0.48 25.55 16 12 O -0.57 -29.79 13.64 -3.04 -0.04 -29.84 16 13 C 0.05 2.19 2.78 -13.03 -0.04 2.15 16 14 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 15 C -0.53 -24.23 7.12 25.60 0.18 -24.05 16 16 H 0.07 3.22 7.81 -2.91 -0.02 3.20 16 17 C 0.04 2.10 3.99 84.65 0.34 2.44 16 18 N -0.87 -45.19 10.89 21.45 0.23 -44.96 16 19 Si 0.94 37.86 29.54 68.60 2.03 39.89 16 20 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 21 H -0.28 -11.35 7.11 99.48 0.71 -10.65 16 22 H -0.29 -12.28 7.11 99.48 0.71 -11.57 16 23 C -0.04 -1.66 4.52 -19.87 -0.09 -1.75 16 24 C -0.12 -5.49 8.21 22.27 0.18 -5.30 16 25 C -0.15 -5.97 10.05 22.27 0.22 -5.75 16 26 C -0.14 -5.25 10.05 22.27 0.22 -5.03 16 27 C -0.15 -6.05 10.05 22.27 0.22 -5.83 16 28 C -0.08 -3.86 8.20 22.27 0.18 -3.67 16 29 C 0.52 16.44 7.73 87.99 0.68 17.12 16 30 O -0.50 -20.15 17.23 -2.86 -0.05 -20.19 16 31 H 0.07 1.33 6.64 -2.39 -0.02 1.31 16 32 H 0.10 1.28 8.14 -2.38 -0.02 1.26 16 33 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.09 2.23 7.41 -2.38 -0.02 2.21 16 35 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.07 1.35 6.65 -2.38 -0.02 1.33 16 38 H 0.15 2.46 8.14 -2.39 -0.02 2.44 16 39 H 0.15 2.57 7.68 -2.39 -0.02 2.55 16 40 H 0.41 12.51 8.23 -92.71 -0.76 11.74 16 41 H 0.26 13.25 8.31 -92.71 -0.77 12.48 16 42 H 0.09 4.50 7.01 -2.91 -0.02 4.48 16 43 H 0.13 4.33 8.06 -2.91 -0.02 4.31 16 44 H 0.14 4.06 8.06 -2.91 -0.02 4.04 16 45 H 0.13 4.32 8.06 -2.91 -0.02 4.29 16 46 H 0.12 5.45 6.02 -2.91 -0.02 5.43 16 Total: -1.00 -67.02 378.77 3.41 -63.62 By element: Atomic # 1 Polarization: 39.40 SS G_CDS: 0.25 Total: 39.66 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: 5.07 Total: 8.16 kcal Atomic # 7 Polarization: -84.61 SS G_CDS: -3.81 Total: -88.43 kcal Atomic # 8 Polarization: -62.76 SS G_CDS: -0.13 Total: -62.89 kcal Atomic # 14 Polarization: 37.86 SS G_CDS: 2.03 Total: 39.89 kcal Total: -67.02 3.41 -63.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001634877017.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.959 kcal (2) G-P(sol) polarization free energy of solvation -67.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds