Wall clock time and date at job start Wed Apr 1 2020 03:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53001 * 109.47291 * 2 1 4 4 N 1.46499 * 109.47427 * 120.00179 * 2 1 3 5 5 C 1.33878 * 122.76346 * 300.00104 * 4 2 1 6 6 O 1.21231 * 125.39341 * 0.02562 * 5 4 2 7 7 C 1.51674 * 109.23890 * 179.91858 * 5 4 2 8 8 C 1.54224 * 103.39023 * 0.12002 * 7 5 4 9 9 H 1.08999 * 110.60918 * 241.29378 * 8 7 5 10 10 N 1.46496 * 110.60807 * 118.47897 * 8 7 5 11 11 C 1.34767 * 120.00246 * 157.15172 * 10 8 7 12 12 O 1.21280 * 120.00229 * 359.97438 * 11 10 8 13 13 C 1.50700 * 120.00480 * 180.02562 * 11 10 8 14 14 H 1.09005 * 109.47234 * 59.99489 * 13 11 10 15 15 C 1.50702 * 109.47079 * 300.00197 * 13 11 10 16 16 H 1.08003 * 119.99919 * 325.51802 * 15 13 11 17 17 C 1.37879 * 120.00196 * 145.51856 * 15 13 11 18 18 N 1.31506 * 120.00085 * 6.60695 * 17 15 13 19 19 Si 1.86802 * 120.00073 * 186.60398 * 17 15 13 20 20 H 1.48509 * 109.47059 * 59.99999 * 19 17 15 21 21 H 1.48496 * 109.47179 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47030 * 300.00753 * 19 17 15 23 23 C 1.50692 * 109.47643 * 179.97438 * 13 11 10 24 24 C 1.38231 * 120.00348 * 245.90033 * 23 13 11 25 25 C 1.38241 * 120.00064 * 179.97438 * 24 23 13 26 26 C 1.38234 * 119.99679 * 0.02562 * 25 24 23 27 27 C 1.38230 * 120.00492 * 0.25317 * 26 25 24 28 28 C 1.38242 * 119.99486 * 65.92589 * 23 13 11 29 29 C 1.33882 * 122.76449 * 120.00180 * 4 2 1 30 30 O 1.21225 * 125.39394 * 359.97283 * 29 4 2 31 31 H 1.08996 * 109.47201 * 299.99569 * 1 2 3 32 32 H 1.08995 * 109.47216 * 59.99749 * 1 2 3 33 33 H 1.09003 * 109.46929 * 180.02562 * 1 2 3 34 34 H 1.09003 * 109.47350 * 240.00082 * 2 1 3 35 35 H 1.08997 * 109.47144 * 179.97438 * 3 2 1 36 36 H 1.08995 * 109.47196 * 300.00263 * 3 2 1 37 37 H 1.09003 * 109.46857 * 59.99780 * 3 2 1 38 38 H 1.09004 * 110.71789 * 241.64276 * 7 5 4 39 39 H 1.08997 * 110.65553 * 118.57384 * 7 5 4 40 40 H 0.97006 * 119.99806 * 337.15207 * 10 8 7 41 41 H 0.96999 * 120.00270 * 179.97438 * 18 17 15 42 42 H 1.07999 * 119.99842 * 0.02562 * 24 23 13 43 43 H 1.08000 * 119.99903 * 180.02562 * 25 24 23 44 44 H 1.08000 * 119.99467 * 179.97438 * 26 25 24 45 45 H 1.07995 * 120.00145 * 179.72537 * 27 26 25 46 46 H 1.07991 * 120.00445 * 359.97438 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.7291 -0.2817 2.4377 6 8 1.0479 0.6808 2.7191 7 6 2.3863 -1.2145 3.4369 8 6 3.1137 -2.2398 2.5435 9 1 2.7274 -3.2438 2.7188 10 7 4.5588 -2.1965 2.7803 11 6 5.3228 -3.2659 2.4824 12 8 4.8140 -4.2645 2.0187 13 6 6.8093 -3.2217 2.7265 14 1 6.9985 -3.0497 3.7861 15 6 7.4177 -2.1036 1.9198 16 1 7.0155 -1.8580 0.9480 17 6 8.4878 -1.3941 2.4223 18 7 9.0604 -1.7740 3.5436 19 14 9.1246 0.1067 1.5103 20 1 8.0419 1.1176 1.4042 21 1 10.2729 0.6864 2.2521 22 1 9.5652 -0.2913 0.1491 23 6 7.4256 -4.5331 2.3130 24 6 7.9950 -5.3595 3.2636 25 6 8.5599 -6.5629 2.8843 26 6 8.5559 -6.9394 1.5542 27 6 7.9917 -6.1104 0.6028 28 6 7.4221 -4.9095 0.9828 29 6 2.7906 -1.7827 1.1377 30 8 3.1703 -2.3204 0.1197 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 3.1299 1.4425 0.0005 36 1 1.6766 1.9563 -0.8899 37 1 1.6766 1.9563 0.8900 38 1 1.6362 -1.7081 4.0548 39 1 3.0995 -0.6723 4.0577 40 1 4.9657 -1.3980 3.1515 41 1 9.8134 -1.2751 3.8969 42 1 7.9977 -5.0654 4.3028 43 1 9.0044 -7.2087 3.6271 44 1 8.9976 -7.8793 1.2578 45 1 7.9925 -6.4026 -0.4369 46 1 6.9773 -4.2639 0.2401 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001634877018.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:23:03 Heat of formation + Delta-G solvation = -97.140852 kcal Electronic energy + Delta-G solvation = -30737.263479 eV Core-core repulsion = 26591.108651 eV Total energy + Delta-G solvation = -4146.154828 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.17930 -40.83626 -39.76454 -39.24605 -37.18321 -36.79007 -35.53730 -34.26679 -32.88254 -31.51607 -31.05612 -29.06490 -28.28494 -26.93142 -25.69065 -24.04489 -23.37850 -23.15242 -22.27440 -21.19184 -20.18313 -18.70524 -18.33128 -18.19023 -18.12788 -17.42735 -17.35562 -16.50662 -16.27935 -16.17287 -15.71721 -15.54817 -15.34600 -15.27461 -15.15833 -14.70041 -14.60966 -14.34825 -14.07062 -14.03006 -13.94458 -13.49564 -13.44969 -13.25180 -13.11447 -12.90776 -12.80044 -12.75408 -12.46598 -12.40334 -12.21050 -11.95459 -11.84780 -11.67422 -11.29678 -11.08450 -10.87183 -10.68965 -10.49375 -10.06042 -9.54005 -9.24880 -8.22747 -6.33711 0.35450 0.77610 0.81685 1.32270 1.40145 1.43570 1.49340 1.55880 1.93662 2.38293 2.41724 3.01888 3.07701 3.17470 3.24692 3.30130 3.75180 3.90861 4.02343 4.05646 4.22451 4.23786 4.31318 4.36461 4.46245 4.54640 4.60965 4.63837 4.67714 4.71477 4.75371 4.89104 4.96835 4.98416 5.09539 5.11006 5.14938 5.38164 5.42552 5.46948 5.64424 5.76491 5.80285 5.83874 5.94669 6.20315 6.24365 6.41157 6.59869 6.68511 6.72923 7.33014 7.45205 8.84535 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.011353 B = 0.003802 C = 0.003290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2465.808494 B = 7363.405311 C = 8509.043892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.110 3.890 3 C -0.160 4.160 4 N -0.569 5.569 5 C 0.535 3.465 6 O -0.495 6.495 7 C -0.145 4.145 8 C 0.116 3.884 9 H 0.137 0.863 10 N -0.703 5.703 11 C 0.532 3.468 12 O -0.574 6.574 13 C 0.056 3.944 14 H 0.077 0.923 15 C -0.519 4.519 16 H 0.043 0.957 17 C 0.043 3.957 18 N -0.896 5.896 19 Si 0.945 3.055 20 H -0.265 1.265 21 H -0.279 1.279 22 H -0.285 1.285 23 C -0.036 4.036 24 C -0.136 4.136 25 C -0.129 4.129 26 C -0.143 4.143 27 C -0.138 4.138 28 C -0.112 4.112 29 C 0.510 3.490 30 O -0.505 6.505 31 H 0.067 0.933 32 H 0.095 0.905 33 H 0.057 0.943 34 H 0.091 0.909 35 H 0.046 0.954 36 H 0.096 0.904 37 H 0.068 0.932 38 H 0.169 0.831 39 H 0.149 0.851 40 H 0.418 0.582 41 H 0.269 0.731 42 H 0.114 0.886 43 H 0.142 0.858 44 H 0.146 0.854 45 H 0.130 0.870 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.407 2.220 0.768 12.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.009 3.991 3 C -0.218 4.218 4 N -0.313 5.313 5 C 0.325 3.675 6 O -0.369 6.369 7 C -0.184 4.184 8 C 0.007 3.993 9 H 0.155 0.845 10 N -0.358 5.358 11 C 0.322 3.678 12 O -0.453 6.453 13 C 0.035 3.965 14 H 0.095 0.905 15 C -0.557 4.557 16 H 0.061 0.939 17 C -0.160 4.160 18 N -0.532 5.532 19 Si 0.771 3.229 20 H -0.189 1.189 21 H -0.204 1.204 22 H -0.211 1.211 23 C -0.037 4.037 24 C -0.155 4.155 25 C -0.147 4.147 26 C -0.161 4.161 27 C -0.156 4.156 28 C -0.130 4.130 29 C 0.297 3.703 30 O -0.375 6.375 31 H 0.086 0.914 32 H 0.113 0.887 33 H 0.076 0.924 34 H 0.109 0.891 35 H 0.065 0.935 36 H 0.115 0.885 37 H 0.087 0.913 38 H 0.187 0.813 39 H 0.167 0.833 40 H 0.256 0.744 41 H 0.078 0.922 42 H 0.132 0.868 43 H 0.160 0.840 44 H 0.163 0.837 45 H 0.148 0.852 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -12.783 1.806 0.149 12.910 hybrid contribution 0.879 1.251 -0.763 1.708 sum -11.904 3.057 -0.614 12.305 Atomic orbital electron populations 1.22089 0.91868 1.02858 1.04487 1.21581 0.96760 0.94199 0.86579 1.22119 1.00850 0.94275 1.04525 1.47094 1.46575 1.27477 1.10158 1.21099 0.78612 0.84415 0.83360 1.90730 1.37022 1.27110 1.81996 1.22993 1.02853 0.95298 0.97288 1.21669 0.83932 1.03672 0.90071 0.84503 1.45689 1.05095 1.18539 1.66441 1.21521 0.90296 0.81480 0.74548 1.90597 1.75662 1.33706 1.45298 1.17992 0.86369 0.92016 1.00101 0.90474 1.20627 1.16607 1.15180 1.03265 0.93865 1.25453 0.95816 0.99241 0.95502 1.69980 1.22387 1.39853 1.20996 0.85820 0.78348 0.80297 0.78471 1.18942 1.20434 1.21076 1.20091 0.95879 0.94383 0.93371 1.21150 1.00288 0.95001 0.99017 1.21324 1.00003 0.96410 0.96951 1.21254 1.01408 1.00479 0.92959 1.21288 0.99517 0.94617 1.00220 1.20814 0.99699 0.96685 0.95838 1.21920 0.75911 0.79042 0.93395 1.90759 1.51225 1.57951 1.37598 0.91365 0.88663 0.92373 0.89076 0.93516 0.88529 0.91321 0.81347 0.83324 0.74407 0.92186 0.86837 0.84046 0.83665 0.85227 0.89568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.81 9.17 71.98 0.66 -2.15 16 2 C 0.11 2.51 3.31 44.99 0.15 2.66 16 3 C -0.16 -3.35 9.17 71.98 0.66 -2.68 16 4 N -0.57 -14.37 2.48 -733.78 -1.82 -16.19 16 5 C 0.53 11.72 7.43 88.11 0.65 12.37 16 6 O -0.50 -12.37 14.82 -2.88 -0.04 -12.41 16 7 C -0.15 -2.36 6.81 30.57 0.21 -2.15 16 8 C 0.12 3.04 3.40 44.86 0.15 3.19 16 9 H 0.14 3.57 7.62 -2.39 -0.02 3.55 16 10 N -0.70 -23.23 5.03 -443.20 -2.23 -25.46 16 11 C 0.53 22.88 7.04 87.66 0.62 23.50 16 12 O -0.57 -27.54 15.09 -3.03 -0.05 -27.59 16 13 C 0.06 2.65 2.36 -13.03 -0.03 2.62 16 14 H 0.08 3.76 7.17 -2.38 -0.02 3.74 16 15 C -0.52 -26.13 7.47 25.60 0.19 -25.94 16 16 H 0.04 2.30 7.82 -2.91 -0.02 2.28 16 17 C 0.04 2.15 5.45 84.66 0.46 2.61 16 18 N -0.90 -46.23 12.87 21.45 0.28 -45.95 16 19 Si 0.94 40.53 29.54 68.60 2.03 42.56 16 20 H -0.26 -10.84 7.11 99.48 0.71 -10.14 16 21 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 22 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 23 C -0.04 -1.72 4.30 -19.87 -0.09 -1.80 16 24 C -0.14 -5.84 9.67 22.27 0.22 -5.63 16 25 C -0.13 -4.67 10.05 22.27 0.22 -4.45 16 26 C -0.14 -4.97 10.05 22.27 0.22 -4.75 16 27 C -0.14 -5.44 10.05 22.27 0.22 -5.22 16 28 C -0.11 -5.25 8.30 22.27 0.18 -5.06 16 29 C 0.51 15.99 7.72 87.99 0.68 16.67 16 30 O -0.50 -20.68 17.23 -2.86 -0.05 -20.73 16 31 H 0.07 1.33 6.64 -2.39 -0.02 1.32 16 32 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.09 2.31 7.41 -2.39 -0.02 2.29 16 35 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.07 1.52 6.65 -2.39 -0.02 1.50 16 38 H 0.17 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.15 1.95 7.68 -2.39 -0.02 1.93 16 40 H 0.42 12.62 8.23 -92.70 -0.76 11.85 16 41 H 0.27 13.28 8.31 -92.71 -0.77 12.51 16 42 H 0.11 4.68 7.95 -2.91 -0.02 4.66 16 43 H 0.14 4.05 8.06 -2.91 -0.02 4.03 16 44 H 0.15 3.85 8.06 -2.91 -0.02 3.82 16 45 H 0.13 4.33 8.06 -2.91 -0.02 4.30 16 46 H 0.09 4.33 7.90 -2.92 -0.02 4.31 16 Total: -1.00 -70.25 388.40 3.75 -66.50 By element: Atomic # 1 Polarization: 35.22 SS G_CDS: 0.25 Total: 35.47 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: 5.39 Total: 3.80 kcal Atomic # 7 Polarization: -83.83 SS G_CDS: -3.77 Total: -87.60 kcal Atomic # 8 Polarization: -60.59 SS G_CDS: -0.14 Total: -60.73 kcal Atomic # 14 Polarization: 40.53 SS G_CDS: 2.03 Total: 42.56 kcal Total: -70.25 3.75 -66.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001634877018.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.644 kcal (2) G-P(sol) polarization free energy of solvation -70.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds