Wall clock time and date at job start Wed Apr 1 2020 03:26:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47262 * 2 1 4 4 N 1.46500 * 109.47211 * 120.00355 * 2 1 3 5 5 C 1.36941 * 119.99725 * 294.90219 * 4 2 1 6 6 H 1.08002 * 119.99969 * 37.14698 * 5 4 2 7 7 C 1.38815 * 120.00300 * 217.14697 * 5 4 2 8 8 N 1.31615 * 119.99783 * 21.26455 * 7 5 4 9 9 Si 1.86792 * 119.99971 * 201.26976 * 7 5 4 10 10 H 1.48506 * 109.47372 * 89.99797 * 9 7 5 11 11 H 1.48507 * 109.47024 * 209.99376 * 9 7 5 12 12 H 1.48498 * 109.47416 * 329.99426 * 9 7 5 13 13 C 1.46494 * 120.00460 * 114.90274 * 4 2 1 14 14 C 1.53003 * 109.47342 * 270.00341 * 13 4 2 15 15 C 1.52993 * 109.46912 * 179.97438 * 14 13 4 16 16 N 1.46502 * 109.46912 * 179.97438 * 15 14 13 17 17 C 1.34777 * 120.00232 * 179.97438 * 16 15 14 18 18 O 1.21582 * 120.00104 * 359.97438 * 17 16 15 19 19 C 1.47571 * 119.99770 * 180.02562 * 17 16 15 20 20 C 1.39753 * 120.13638 * 359.97272 * 19 17 16 21 21 C 1.37918 * 119.87849 * 180.02562 * 20 19 17 22 22 F 1.35095 * 119.92874 * 179.97438 * 21 20 19 23 23 C 1.38950 * 120.14660 * 359.73167 * 21 20 19 24 24 F 1.35098 * 119.86853 * 180.29617 * 23 21 20 25 25 C 1.38454 * 120.26390 * 0.55179 * 23 21 20 26 26 C 1.38204 * 120.11969 * 359.44481 * 25 23 21 27 27 F 1.35104 * 120.07422 * 180.29795 * 26 25 23 28 28 H 1.08991 * 109.47030 * 303.30781 * 1 2 3 29 29 H 1.09002 * 109.46319 * 63.31244 * 1 2 3 30 30 H 1.09001 * 109.46611 * 183.30654 * 1 2 3 31 31 H 1.09004 * 109.47696 * 240.00244 * 2 1 3 32 32 H 1.08997 * 109.47335 * 181.61404 * 3 2 1 33 33 H 1.08998 * 109.47345 * 301.62064 * 3 2 1 34 34 H 1.09007 * 109.46890 * 61.61762 * 3 2 1 35 35 H 0.97001 * 120.00207 * 180.02562 * 8 7 5 36 36 H 1.08999 * 109.47449 * 149.99697 * 13 4 2 37 37 H 1.09003 * 109.46822 * 30.00213 * 13 4 2 38 38 H 1.08999 * 109.46746 * 59.99733 * 14 13 4 39 39 H 1.09004 * 109.46327 * 299.99863 * 14 13 4 40 40 H 1.08999 * 109.47444 * 60.00392 * 15 14 13 41 41 H 1.08992 * 109.47405 * 299.99454 * 15 14 13 42 42 H 0.97008 * 119.99678 * 359.97438 * 16 15 14 43 43 H 1.08000 * 120.05760 * 0.02562 * 20 19 17 44 44 H 1.07999 * 119.93576 * 179.72470 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.7758 -0.1651 2.4372 6 1 0.8339 0.3218 2.6427 7 6 2.7404 -0.2582 3.4311 8 7 4.0014 -0.4530 3.1081 9 14 2.2488 -0.1071 5.2268 10 1 1.9206 -1.4517 5.7651 11 1 3.3747 0.4747 6.0010 12 1 1.0604 0.7758 5.3421 13 6 2.7662 -1.9435 1.0646 14 6 1.7930 -3.1238 1.0927 15 6 2.5741 -4.4321 0.9548 16 7 1.6423 -5.5623 0.9823 17 6 2.1081 -6.8224 0.8750 18 8 3.3015 -7.0213 0.7550 19 6 1.1693 -7.9608 0.9022 20 6 -0.2030 -7.7354 1.0396 21 6 -1.0755 -8.8032 1.0649 22 9 -2.4023 -8.5865 1.1981 23 6 -0.5934 -10.1012 0.9485 24 9 -1.4537 -11.1427 0.9679 25 6 0.7655 -10.3317 0.8180 26 6 1.6497 -9.2698 0.7913 27 9 2.9750 -9.4955 0.6578 28 1 -0.3633 0.5643 0.8588 29 1 -0.3632 0.4616 -0.9182 30 1 -0.3632 -1.0260 0.0593 31 1 1.8935 -0.5138 -0.8900 32 1 3.1296 1.4426 -0.0289 33 1 1.6532 1.9647 -0.8751 34 1 1.7006 1.9479 0.9042 35 1 4.6754 -0.5184 3.8026 36 1 3.4714 -2.0342 1.8908 37 1 3.3109 -1.9441 0.1204 38 1 1.0880 -3.0330 0.2665 39 1 1.2484 -3.1231 2.0370 40 1 3.2794 -4.5231 1.7808 41 1 3.1184 -4.4325 0.0105 42 1 0.6901 -5.4036 1.0777 43 1 -0.5796 -6.7268 1.1258 44 1 1.1349 -11.3430 0.7324 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664534465.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:37 Heat of formation + Delta-G solvation = -129.714929 kcal Electronic energy + Delta-G solvation = -29563.104138 eV Core-core repulsion = 24873.680051 eV Total energy + Delta-G solvation = -4689.424087 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.06693 -49.34856 -49.12044 -40.26254 -38.42636 -36.82469 -35.17795 -32.71584 -32.20606 -31.16696 -30.61004 -28.78151 -26.21640 -25.69474 -24.64592 -23.78543 -22.83463 -21.08851 -20.72079 -19.55178 -18.98291 -18.41514 -18.14850 -17.03315 -17.01920 -16.41507 -15.99117 -15.96034 -15.54688 -15.45213 -15.34874 -15.06274 -15.00765 -14.91695 -14.33182 -14.09368 -13.98497 -13.48119 -13.40349 -12.90062 -12.81884 -12.44510 -12.32702 -12.20923 -11.76831 -11.54711 -11.48122 -11.33105 -11.01107 -10.80110 -10.69381 -10.46674 -10.26980 -10.09758 -9.92726 -9.85962 -9.62574 -9.53196 -9.23914 -8.97795 -8.49437 -6.58191 -5.79569 -3.37624 -0.16330 0.20346 2.14619 2.88629 3.01657 3.10280 3.33678 3.37267 3.42448 3.42701 3.74938 3.76863 4.09990 4.42035 4.46093 4.82786 4.91634 4.99266 5.17555 5.21460 5.31191 5.34161 5.58527 5.72334 5.91637 5.95803 5.99024 6.13113 6.23947 6.31174 6.34929 6.42190 6.60321 6.67193 6.70114 6.76452 6.76738 7.06842 7.18885 7.32056 7.38903 7.65744 7.82713 8.04433 8.51616 9.18645 9.81342 10.39749 11.20244 Molecular weight = 344.15amu Principal moments of inertia in cm(-1) A = 0.013017 B = 0.002375 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2150.528739 B =11789.087437 C =12013.538050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.162 3.838 3 C -0.146 4.146 4 N -0.579 5.579 5 C -0.252 4.252 6 H 0.060 0.940 7 C 0.012 3.988 8 N -0.886 5.886 9 Si 0.893 3.107 10 H -0.287 1.287 11 H -0.292 1.292 12 H -0.278 1.278 13 C 0.151 3.849 14 C -0.147 4.147 15 C 0.120 3.880 16 N -0.715 5.715 17 C 0.553 3.447 18 O -0.519 6.519 19 C -0.149 4.149 20 C -0.065 4.065 21 C 0.054 3.946 22 F -0.119 7.119 23 C 0.123 3.877 24 F -0.115 7.115 25 C -0.174 4.174 26 C 0.183 3.817 27 F -0.098 7.098 28 H 0.051 0.949 29 H 0.035 0.965 30 H 0.043 0.957 31 H 0.044 0.956 32 H 0.048 0.952 33 H 0.029 0.971 34 H 0.057 0.943 35 H 0.254 0.746 36 H 0.098 0.902 37 H 0.025 0.975 38 H 0.050 0.950 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.067 0.933 42 H 0.398 0.602 43 H 0.162 0.838 44 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.201 -17.408 -6.253 20.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.055 3.945 3 C -0.204 4.204 4 N -0.299 5.299 5 C -0.382 4.382 6 H 0.078 0.922 7 C -0.188 4.188 8 N -0.528 5.528 9 Si 0.723 3.277 10 H -0.214 1.214 11 H -0.218 1.218 12 H -0.204 1.204 13 C 0.023 3.977 14 C -0.187 4.187 15 C -0.003 4.003 16 N -0.366 5.366 17 C 0.338 3.662 18 O -0.396 6.396 19 C -0.154 4.154 20 C -0.084 4.084 21 C 0.033 3.967 22 F -0.097 7.097 23 C 0.102 3.898 24 F -0.093 7.093 25 C -0.194 4.194 26 C 0.162 3.838 27 F -0.076 7.076 28 H 0.070 0.930 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.048 0.952 34 H 0.076 0.924 35 H 0.064 0.936 36 H 0.115 0.885 37 H 0.043 0.957 38 H 0.069 0.931 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.085 0.915 42 H 0.233 0.767 43 H 0.180 0.820 44 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -8.180 -17.521 -6.242 20.319 hybrid contribution -0.979 -0.125 1.104 1.481 sum -9.159 -17.646 -5.138 20.534 Atomic orbital electron populations 1.22205 0.98920 1.00452 0.99746 1.20418 0.91937 0.92342 0.89817 1.22036 1.00843 0.97835 0.99728 1.43861 1.64335 1.20462 1.01253 1.18911 0.97491 1.34599 0.87222 0.92249 1.25157 0.94527 1.00485 0.98664 1.69978 0.99386 1.51547 1.31918 0.86451 0.77704 0.77857 0.85715 1.21417 1.21812 1.20359 1.20813 0.93042 0.82828 1.00994 1.22532 1.00519 0.94072 1.01613 1.21587 0.92177 0.84175 1.02323 1.46103 1.11535 1.05699 1.73252 1.17716 0.87606 0.82727 0.78194 1.90882 1.15234 1.84857 1.48592 1.20116 0.93838 0.93663 1.07737 1.21150 0.90941 0.99655 0.96667 1.17392 0.79188 0.92081 1.08008 1.91591 1.29490 1.95266 1.93384 1.17432 0.87453 0.82941 1.01986 1.91594 1.68802 1.55589 1.93320 1.20948 0.90495 1.01241 1.06706 1.17231 0.78795 0.91386 0.96399 1.91673 1.29342 1.94961 1.91623 0.92960 0.94624 0.93804 0.93725 0.93323 0.95203 0.92361 0.93571 0.88483 0.95675 0.93147 0.91552 0.91016 0.91508 0.76691 0.82012 0.81552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 9.19 37.16 0.34 -2.34 16 2 C 0.16 3.20 3.37 -67.93 -0.23 2.97 16 3 C -0.15 -2.86 9.11 37.16 0.34 -2.52 16 4 N -0.58 -13.17 2.37 -165.66 -0.39 -13.56 16 5 C -0.25 -6.38 8.04 -15.06 -0.12 -6.50 16 6 H 0.06 1.53 7.14 -52.49 -0.37 1.15 16 7 C 0.01 0.31 4.96 -17.43 -0.09 0.23 16 8 N -0.89 -24.36 11.43 55.49 0.63 -23.72 16 9 Si 0.89 20.79 29.60 -169.99 -5.03 15.76 16 10 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 13 C 0.15 3.20 5.28 -4.04 -0.02 3.18 16 14 C -0.15 -2.49 5.65 -26.73 -0.15 -2.64 16 15 C 0.12 1.84 5.67 -4.04 -0.02 1.82 16 16 N -0.71 -8.97 5.51 -61.34 -0.34 -9.31 16 17 C 0.55 7.53 7.76 -12.45 -0.10 7.43 16 18 O -0.52 -9.12 15.33 5.29 0.08 -9.04 16 19 C -0.15 -1.54 5.88 -104.91 -0.62 -2.16 16 20 C -0.06 -0.52 9.51 -39.13 -0.37 -0.89 16 21 C 0.05 0.45 7.29 -39.43 -0.29 0.16 16 22 F -0.12 -1.10 17.17 2.25 0.04 -1.06 16 23 C 0.12 0.99 7.31 -39.24 -0.29 0.70 16 24 F -0.11 -0.98 17.17 2.25 0.04 -0.94 16 25 C -0.17 -1.30 9.99 -39.51 -0.39 -1.70 16 26 C 0.18 1.83 7.28 -38.98 -0.28 1.55 16 27 F -0.10 -1.21 15.54 2.25 0.04 -1.18 16 28 H 0.05 0.97 7.32 -51.93 -0.38 0.59 16 29 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.04 0.84 7.77 -51.93 -0.40 0.43 16 32 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 1.23 7.50 -51.92 -0.39 0.85 16 35 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16 36 H 0.10 2.39 5.48 -51.93 -0.28 2.11 16 37 H 0.02 0.51 7.88 -51.93 -0.41 0.11 16 38 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 40 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 41 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.40 3.84 6.50 -40.82 -0.27 3.57 16 43 H 0.16 0.95 6.40 -52.49 -0.34 0.61 16 44 H 0.17 0.84 8.06 -52.49 -0.42 0.42 16 LS Contribution 379.24 15.07 5.72 5.72 Total: -1.00 -29.58 379.24 -7.29 -36.87 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -5.78 Total: 1.17 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: -2.29 Total: -0.71 kcal Atomic # 7 Polarization: -46.49 SS G_CDS: -0.10 Total: -46.59 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: 0.08 Total: -9.04 kcal Atomic # 9 Polarization: -3.29 SS G_CDS: 0.11 Total: -3.18 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.03 Total: 15.76 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -29.58 -7.29 -36.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664534465.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.844 kcal (2) G-P(sol) polarization free energy of solvation -29.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds