Wall clock time and date at job start Wed Apr 1 2020 03:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47262 * 2 1 4 4 N 1.46500 * 109.47211 * 120.00355 * 2 1 3 5 5 C 1.36941 * 119.99725 * 294.90219 * 4 2 1 6 6 H 1.08002 * 119.99969 * 37.14698 * 5 4 2 7 7 C 1.38815 * 120.00300 * 217.14697 * 5 4 2 8 8 N 1.31615 * 119.99783 * 21.26455 * 7 5 4 9 9 Si 1.86792 * 119.99971 * 201.26976 * 7 5 4 10 10 H 1.48506 * 109.47372 * 89.99797 * 9 7 5 11 11 H 1.48507 * 109.47024 * 209.99376 * 9 7 5 12 12 H 1.48498 * 109.47416 * 329.99426 * 9 7 5 13 13 C 1.46494 * 120.00460 * 114.90274 * 4 2 1 14 14 C 1.53003 * 109.47342 * 270.00341 * 13 4 2 15 15 C 1.52993 * 109.46912 * 179.97438 * 14 13 4 16 16 N 1.46502 * 109.46912 * 179.97438 * 15 14 13 17 17 C 1.34777 * 120.00232 * 179.97438 * 16 15 14 18 18 O 1.21582 * 120.00104 * 359.97438 * 17 16 15 19 19 C 1.47571 * 119.99770 * 180.02562 * 17 16 15 20 20 C 1.39753 * 120.13638 * 359.97272 * 19 17 16 21 21 C 1.37918 * 119.87849 * 180.02562 * 20 19 17 22 22 F 1.35095 * 119.92874 * 179.97438 * 21 20 19 23 23 C 1.38950 * 120.14660 * 359.73167 * 21 20 19 24 24 F 1.35098 * 119.86853 * 180.29617 * 23 21 20 25 25 C 1.38454 * 120.26390 * 0.55179 * 23 21 20 26 26 C 1.38204 * 120.11969 * 359.44481 * 25 23 21 27 27 F 1.35104 * 120.07422 * 180.29795 * 26 25 23 28 28 H 1.08991 * 109.47030 * 303.30781 * 1 2 3 29 29 H 1.09002 * 109.46319 * 63.31244 * 1 2 3 30 30 H 1.09001 * 109.46611 * 183.30654 * 1 2 3 31 31 H 1.09004 * 109.47696 * 240.00244 * 2 1 3 32 32 H 1.08997 * 109.47335 * 181.61404 * 3 2 1 33 33 H 1.08998 * 109.47345 * 301.62064 * 3 2 1 34 34 H 1.09007 * 109.46890 * 61.61762 * 3 2 1 35 35 H 0.97001 * 120.00207 * 180.02562 * 8 7 5 36 36 H 1.08999 * 109.47449 * 149.99697 * 13 4 2 37 37 H 1.09003 * 109.46822 * 30.00213 * 13 4 2 38 38 H 1.08999 * 109.46746 * 59.99733 * 14 13 4 39 39 H 1.09004 * 109.46327 * 299.99863 * 14 13 4 40 40 H 1.08999 * 109.47444 * 60.00392 * 15 14 13 41 41 H 1.08992 * 109.47405 * 299.99454 * 15 14 13 42 42 H 0.97008 * 119.99678 * 359.97438 * 16 15 14 43 43 H 1.08000 * 120.05760 * 0.02562 * 20 19 17 44 44 H 1.07999 * 119.93576 * 179.72470 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.7758 -0.1651 2.4372 6 1 0.8339 0.3218 2.6427 7 6 2.7404 -0.2582 3.4311 8 7 4.0014 -0.4530 3.1081 9 14 2.2488 -0.1071 5.2268 10 1 1.9206 -1.4517 5.7651 11 1 3.3747 0.4747 6.0010 12 1 1.0604 0.7758 5.3421 13 6 2.7662 -1.9435 1.0646 14 6 1.7930 -3.1238 1.0927 15 6 2.5741 -4.4321 0.9548 16 7 1.6423 -5.5623 0.9823 17 6 2.1081 -6.8224 0.8750 18 8 3.3015 -7.0213 0.7550 19 6 1.1693 -7.9608 0.9022 20 6 -0.2030 -7.7354 1.0396 21 6 -1.0755 -8.8032 1.0649 22 9 -2.4023 -8.5865 1.1981 23 6 -0.5934 -10.1012 0.9485 24 9 -1.4537 -11.1427 0.9679 25 6 0.7655 -10.3317 0.8180 26 6 1.6497 -9.2698 0.7913 27 9 2.9750 -9.4955 0.6578 28 1 -0.3633 0.5643 0.8588 29 1 -0.3632 0.4616 -0.9182 30 1 -0.3632 -1.0260 0.0593 31 1 1.8935 -0.5138 -0.8900 32 1 3.1296 1.4426 -0.0289 33 1 1.6532 1.9647 -0.8751 34 1 1.7006 1.9479 0.9042 35 1 4.6754 -0.5184 3.8026 36 1 3.4714 -2.0342 1.8908 37 1 3.3109 -1.9441 0.1204 38 1 1.0880 -3.0330 0.2665 39 1 1.2484 -3.1231 2.0370 40 1 3.2794 -4.5231 1.7808 41 1 3.1184 -4.4325 0.0105 42 1 0.6901 -5.4036 1.0777 43 1 -0.5796 -6.7268 1.1258 44 1 1.1349 -11.3430 0.7324 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664534465.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:36 Heat of formation + Delta-G solvation = -145.588270 kcal Electronic energy + Delta-G solvation = -29563.792458 eV Core-core repulsion = 24873.680051 eV Total energy + Delta-G solvation = -4690.112406 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -50.74394 -50.18903 -49.80257 -41.25071 -39.29791 -38.47026 -36.46520 -34.29279 -33.55809 -32.30947 -31.38185 -30.35573 -27.70821 -27.24515 -25.70169 -24.88331 -23.95176 -22.40941 -21.87146 -21.26970 -19.76956 -19.20308 -18.96044 -18.15024 -17.84626 -17.73735 -17.05659 -16.94750 -16.78814 -16.45317 -16.42162 -16.17895 -15.89525 -15.74485 -15.69904 -15.57996 -14.98018 -14.90902 -14.56770 -14.39067 -14.02986 -13.59347 -13.34302 -13.24256 -13.13640 -12.98351 -12.92904 -12.82426 -12.68704 -12.50115 -12.32644 -12.11669 -11.89120 -11.68263 -11.31186 -11.29150 -11.14317 -10.54881 -10.44375 -10.22469 -9.89102 -8.46694 -7.73859 -5.35270 -0.90879 -0.45178 1.32440 1.46826 1.50708 1.56935 1.88980 2.18911 2.30970 2.55247 2.66845 3.05042 3.10213 3.30111 3.34299 3.63414 3.73139 4.11656 4.20729 4.23697 4.29483 4.38027 4.38785 4.54187 4.57739 4.61020 4.66646 4.76348 4.83845 4.95992 5.00206 5.12964 5.18451 5.23276 5.25674 5.29892 5.34902 5.52715 5.65879 5.71007 5.78521 5.93981 6.36320 6.56174 7.01588 7.26743 7.97810 8.49288 9.21112 Molecular weight = 344.15amu Principal moments of inertia in cm(-1) A = 0.013017 B = 0.002375 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2150.528739 B =11789.087437 C =12013.538050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.152 3.848 3 C -0.138 4.138 4 N -0.593 5.593 5 C -0.242 4.242 6 H 0.056 0.944 7 C -0.037 4.037 8 N -0.918 5.918 9 Si 0.945 3.055 10 H -0.287 1.287 11 H -0.301 1.301 12 H -0.270 1.270 13 C 0.148 3.852 14 C -0.123 4.123 15 C 0.133 3.867 16 N -0.703 5.703 17 C 0.553 3.447 18 O -0.565 6.565 19 C -0.159 4.159 20 C -0.048 4.048 21 C 0.054 3.946 22 F -0.122 7.122 23 C 0.129 3.871 24 F -0.115 7.115 25 C -0.156 4.156 26 C 0.170 3.830 27 F -0.117 7.117 28 H 0.035 0.965 29 H 0.065 0.935 30 H 0.050 0.950 31 H 0.058 0.942 32 H 0.023 0.977 33 H 0.064 0.936 34 H 0.035 0.965 35 H 0.247 0.753 36 H 0.061 0.939 37 H 0.026 0.974 38 H 0.072 0.928 39 H 0.055 0.945 40 H 0.048 0.952 41 H 0.065 0.935 42 H 0.415 0.585 43 H 0.185 0.815 44 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.877 -18.389 -7.157 23.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.046 3.954 3 C -0.197 4.197 4 N -0.314 5.314 5 C -0.373 4.373 6 H 0.073 0.927 7 C -0.234 4.234 8 N -0.562 5.562 9 Si 0.775 3.225 10 H -0.214 1.214 11 H -0.229 1.229 12 H -0.195 1.195 13 C 0.022 3.978 14 C -0.164 4.164 15 C 0.009 3.991 16 N -0.355 5.355 17 C 0.340 3.660 18 O -0.445 6.445 19 C -0.164 4.164 20 C -0.067 4.067 21 C 0.034 3.966 22 F -0.100 7.100 23 C 0.109 3.891 24 F -0.093 7.093 25 C -0.175 4.175 26 C 0.149 3.851 27 F -0.095 7.095 28 H 0.055 0.945 29 H 0.083 0.917 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.042 0.958 33 H 0.083 0.917 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.079 0.921 37 H 0.044 0.956 38 H 0.090 0.910 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.084 0.916 42 H 0.253 0.747 43 H 0.202 0.798 44 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -10.926 -18.501 -7.157 22.646 hybrid contribution -0.203 0.169 1.302 1.328 sum -11.129 -18.332 -5.855 22.230 Atomic orbital electron populations 1.22050 0.96520 1.00981 1.00559 1.20667 0.93683 0.92012 0.89048 1.21964 0.99246 0.98238 1.00255 1.44096 1.64422 1.21361 1.01542 1.19039 0.96823 1.33097 0.88337 0.92665 1.25727 0.94547 1.01516 1.01617 1.70114 1.00126 1.53730 1.32260 0.85611 0.77114 0.77656 0.82144 1.21378 1.22854 1.19506 1.20717 0.93467 0.84142 0.99523 1.22154 0.99499 0.92861 1.01844 1.21227 0.92047 0.84527 1.01336 1.45859 1.12010 1.04845 1.72815 1.18124 0.87498 0.83421 0.76943 1.90861 1.17384 1.85529 1.50763 1.19818 0.94102 0.92517 1.09954 1.21220 0.89617 1.00737 0.95171 1.17415 0.79020 0.92229 1.07951 1.91591 1.29732 1.95300 1.93415 1.17477 0.87536 0.82824 1.01306 1.91602 1.68834 1.55653 1.93233 1.21047 0.89742 1.01716 1.04974 1.17461 0.78386 0.92001 0.97294 1.91630 1.30790 1.95071 1.91961 0.94541 0.91654 0.93124 0.92377 0.95769 0.91678 0.94536 0.94365 0.92074 0.95554 0.90980 0.92600 0.93367 0.91644 0.74718 0.79781 0.79011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.52 9.19 71.98 0.66 -3.86 16 2 C 0.15 5.74 3.37 44.99 0.15 5.89 16 3 C -0.14 -5.28 9.11 71.98 0.66 -4.63 16 4 N -0.59 -26.78 2.37 -678.02 -1.61 -28.39 16 5 C -0.24 -12.26 8.04 84.03 0.68 -11.58 16 6 H 0.06 2.82 7.14 -2.91 -0.02 2.80 16 7 C -0.04 -1.97 4.96 84.86 0.42 -1.55 16 8 N -0.92 -52.07 11.43 21.65 0.25 -51.82 16 9 Si 0.95 43.33 29.60 68.60 2.03 45.36 16 10 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 11 H -0.30 -14.19 7.11 99.48 0.71 -13.49 16 12 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 13 C 0.15 6.35 5.28 86.38 0.46 6.81 16 14 C -0.12 -4.06 5.65 30.59 0.17 -3.88 16 15 C 0.13 4.04 5.67 86.38 0.49 4.53 16 16 N -0.70 -16.81 5.51 -466.26 -2.57 -19.38 16 17 C 0.55 14.79 7.76 86.71 0.67 15.46 16 18 O -0.57 -20.28 15.33 -3.98 -0.06 -20.34 16 19 C -0.16 -3.08 5.88 -20.05 -0.12 -3.20 16 20 C -0.05 -0.65 9.51 22.56 0.21 -0.43 16 21 C 0.05 0.76 7.29 22.36 0.16 0.92 16 22 F -0.12 -1.92 17.17 44.97 0.77 -1.15 16 23 C 0.13 1.74 7.31 22.49 0.16 1.90 16 24 F -0.12 -1.66 17.17 44.97 0.77 -0.89 16 25 C -0.16 -1.96 9.99 22.31 0.22 -1.74 16 26 C 0.17 3.20 7.28 22.66 0.16 3.36 16 27 F -0.12 -2.87 15.54 44.97 0.70 -2.18 16 28 H 0.04 1.26 7.32 -2.39 -0.02 1.24 16 29 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.06 2.04 7.77 -2.39 -0.02 2.02 16 32 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.04 1.52 7.50 -2.38 -0.02 1.50 16 35 H 0.25 13.81 8.31 -92.71 -0.77 13.04 16 36 H 0.06 3.12 5.48 -2.39 -0.01 3.11 16 37 H 0.03 1.09 7.88 -2.39 -0.02 1.07 16 38 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 40 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.41 7.00 6.50 -92.70 -0.60 6.40 16 43 H 0.19 1.53 6.40 -2.91 -0.02 1.51 16 44 H 0.19 1.38 8.06 -2.91 -0.02 1.36 16 Total: -1.00 -65.74 379.24 5.90 -59.84 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: 0.44 Total: 10.94 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: 5.17 Total: 8.00 kcal Atomic # 7 Polarization: -95.66 SS G_CDS: -3.93 Total: -99.59 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -0.06 Total: -20.34 kcal Atomic # 9 Polarization: -6.46 SS G_CDS: 2.24 Total: -4.22 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -65.74 5.90 -59.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664534465.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.748 kcal (2) G-P(sol) polarization free energy of solvation -65.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds