Wall clock time and date at job start Wed Apr 1 2020 02:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 F 1.39903 * 109.46624 * 2 1 4 4 F 1.39893 * 109.47540 * 239.99611 * 2 1 3 5 5 C 1.53001 * 109.46780 * 119.99246 * 2 1 3 6 6 C 1.53001 * 109.47073 * 180.02562 * 5 2 1 7 7 C 1.50697 * 109.47382 * 180.02562 * 6 5 2 8 8 O 1.21280 * 119.99937 * 359.97438 * 7 6 5 9 9 N 1.34783 * 120.00199 * 180.02562 * 7 6 5 10 10 C 1.46490 * 119.99973 * 179.97438 * 9 7 6 11 11 C 1.50699 * 109.47167 * 179.97438 * 10 9 7 12 12 N 1.31789 * 119.09648 * 269.98067 * 11 10 9 13 13 C 1.32799 * 120.71637 * 179.97438 * 12 11 10 14 14 O 1.35519 * 120.50861 * 179.97438 * 13 12 11 15 15 C 1.39416 * 118.97466 * 359.74609 * 13 12 11 16 16 C 1.38181 * 118.35119 * 0.51526 * 15 13 12 17 17 C 1.50697 * 120.41367 * 179.76229 * 16 15 13 18 18 N 1.46499 * 109.47276 * 94.71971 * 17 16 15 19 19 C 1.36935 * 119.99938 * 180.02562 * 18 17 16 20 20 H 1.08000 * 120.00518 * 359.72965 * 19 18 17 21 21 C 1.38817 * 119.99990 * 179.97438 * 19 18 17 22 22 N 1.31617 * 119.99869 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99909 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47361 * 0.02562 * 23 21 19 25 25 H 1.48508 * 109.46860 * 120.00310 * 23 21 19 26 26 H 1.48500 * 109.47264 * 240.00123 * 23 21 19 27 27 N 1.31763 * 119.09108 * 90.00041 * 11 10 9 28 28 H 1.09001 * 109.47872 * 300.00038 * 1 2 3 29 29 H 1.09000 * 109.47290 * 60.00733 * 1 2 3 30 30 H 1.09000 * 109.47199 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46859 * 60.00888 * 5 2 1 32 32 H 1.08999 * 109.47651 * 300.00182 * 5 2 1 33 33 H 1.09003 * 109.47235 * 59.99821 * 6 5 2 34 34 H 1.09006 * 109.47061 * 300.00268 * 6 5 2 35 35 H 0.96998 * 119.99587 * 359.97438 * 9 7 6 36 36 H 1.09004 * 109.47512 * 60.00127 * 10 9 7 37 37 H 1.08994 * 109.47511 * 300.00073 * 10 9 7 38 38 H 0.96702 * 114.00026 * 90.00217 * 14 13 12 39 39 H 1.08004 * 120.81960 * 180.27450 * 15 13 12 40 40 H 1.09004 * 109.47205 * 334.71946 * 17 16 15 41 41 H 1.09005 * 109.47240 * 214.72155 * 17 16 15 42 42 H 0.96999 * 119.99984 * 0.02562 * 18 17 16 43 43 H 0.96996 * 119.99743 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 9 1.9962 1.3191 0.0000 4 9 1.9964 -0.6595 -1.1421 5 6 2.0399 -0.7211 1.2494 6 6 3.5699 -0.7206 1.2498 7 6 4.0722 -1.4314 2.4800 8 8 3.2841 -1.8925 3.2781 9 7 5.3973 -1.5537 2.6938 10 6 5.8856 -2.2442 3.8900 11 6 7.3926 -2.2438 3.8903 12 7 8.0338 -3.2411 3.3150 13 6 9.3613 -3.2730 3.2960 14 8 10.0164 -4.3008 2.7037 15 6 10.0704 -2.2303 3.8908 16 6 9.3573 -1.2081 4.4872 17 6 10.0767 -0.0608 5.1484 18 7 10.2035 1.0481 4.1994 19 6 10.8275 2.2063 4.5793 20 1 11.2222 2.3041 5.5798 21 6 10.9481 3.2568 3.6799 22 7 10.4625 3.1397 2.4622 23 14 11.7986 4.8371 4.1983 24 1 12.2520 4.7161 5.6072 25 1 12.9717 5.0789 3.3203 26 1 10.8489 5.9725 4.0793 27 7 8.0328 -1.2465 4.4662 28 1 -0.3635 0.5138 0.8899 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.6766 -1.7488 1.2494 32 1 1.6765 -0.2072 2.1393 33 1 3.9329 0.3072 1.2498 34 1 3.9336 -1.2343 0.3598 35 1 6.0276 -1.1845 2.0556 36 1 5.5229 -3.2721 3.8897 37 1 5.5216 -1.7308 4.7799 38 1 10.2062 -4.1582 1.7663 39 1 11.1505 -2.2239 3.8888 40 1 11.0687 -0.3861 5.4618 41 1 9.5106 0.2694 6.0195 42 1 9.8456 0.9618 3.3020 43 1 10.5465 3.8739 1.8339 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691422315.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:39:05 Heat of formation + Delta-G solvation = -152.200099 kcal Electronic energy + Delta-G solvation = -29046.875515 eV Core-core repulsion = 24376.396360 eV Total energy + Delta-G solvation = -4670.479155 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.94650 -47.93506 -42.45934 -40.80718 -38.83063 -37.20328 -36.01637 -35.13707 -34.64760 -33.17872 -32.43898 -31.59290 -28.88817 -28.22129 -25.89886 -25.24870 -24.06707 -22.95686 -22.47533 -21.51511 -19.96963 -19.44287 -18.83382 -18.61180 -18.57366 -17.56628 -17.19197 -16.94959 -16.86946 -16.80297 -16.70923 -16.43965 -15.68797 -15.41230 -15.23250 -14.97019 -14.81295 -14.56408 -14.33150 -14.28867 -14.18310 -14.12346 -13.80414 -13.56463 -13.32562 -13.17035 -13.11953 -12.96044 -12.85384 -12.80389 -12.25487 -12.08212 -11.97642 -11.83956 -11.80113 -11.53093 -11.17289 -11.03054 -10.61500 -10.44250 -10.28978 -9.08320 -7.97438 -5.28222 -0.42182 -0.23329 1.49723 1.50685 1.50784 1.60443 1.81812 2.23072 2.47906 2.57888 2.69745 2.87048 3.11555 3.21740 3.37886 3.38229 3.49710 3.71943 3.80534 3.87756 4.07621 4.09646 4.10510 4.15357 4.23828 4.44794 4.50793 4.57012 4.63562 4.65493 4.78598 4.88066 4.94565 4.95678 5.04855 5.09193 5.17102 5.49501 5.79839 6.21767 6.30610 6.45315 6.87247 7.03764 7.29916 7.96005 8.21878 9.25833 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.007692 B = 0.002697 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3639.136215 B =10379.207733 C =13074.656103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.279 3.721 3 F -0.215 7.215 4 F -0.212 7.212 5 C -0.140 4.140 6 C -0.144 4.144 7 C 0.526 3.474 8 O -0.570 6.570 9 N -0.716 5.716 10 C 0.201 3.799 11 C 0.316 3.684 12 N -0.536 5.536 13 C 0.364 3.636 14 O -0.474 6.474 15 C -0.212 4.212 16 C 0.183 3.817 17 C 0.198 3.802 18 N -0.733 5.733 19 C -0.244 4.244 20 H 0.084 0.916 21 C -0.071 4.071 22 N -0.967 5.967 23 Si 0.975 3.025 24 H -0.264 1.264 25 H -0.292 1.292 26 H -0.296 1.296 27 N -0.516 5.516 28 H 0.101 0.899 29 H 0.084 0.916 30 H 0.105 0.895 31 H 0.110 0.890 32 H 0.104 0.896 33 H 0.106 0.894 34 H 0.116 0.884 35 H 0.409 0.591 36 H 0.102 0.898 37 H 0.092 0.908 38 H 0.430 0.570 39 H 0.175 0.825 40 H 0.065 0.935 41 H 0.042 0.958 42 H 0.373 0.627 43 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.340 -13.192 -4.641 20.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.243 3.757 3 F -0.196 7.196 4 F -0.193 7.193 5 C -0.178 4.178 6 C -0.184 4.184 7 C 0.314 3.686 8 O -0.450 6.450 9 N -0.368 5.368 10 C 0.075 3.925 11 C 0.047 3.953 12 N -0.262 5.262 13 C 0.176 3.824 14 O -0.285 6.285 15 C -0.235 4.235 16 C 0.039 3.961 17 C 0.071 3.929 18 N -0.377 5.377 19 C -0.375 4.375 20 H 0.102 0.898 21 C -0.264 4.264 22 N -0.617 5.617 23 Si 0.804 3.196 24 H -0.188 1.188 25 H -0.219 1.219 26 H -0.223 1.223 27 N -0.233 5.233 28 H 0.120 0.880 29 H 0.103 0.897 30 H 0.124 0.876 31 H 0.129 0.871 32 H 0.122 0.878 33 H 0.125 0.875 34 H 0.134 0.866 35 H 0.244 0.756 36 H 0.120 0.880 37 H 0.111 0.889 38 H 0.294 0.706 39 H 0.192 0.808 40 H 0.083 0.917 41 H 0.060 0.940 42 H 0.205 0.795 43 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -15.688 -13.705 -3.432 21.112 hybrid contribution 1.907 1.298 -1.086 2.550 sum -13.781 -12.407 -4.518 19.086 Atomic orbital electron populations 1.22788 0.89055 1.06817 1.06174 1.21508 0.95607 0.74948 0.83645 1.93006 1.90908 1.38794 1.96895 1.92989 1.90882 1.81081 1.54346 1.22380 0.94700 1.04037 0.96671 1.21667 0.97025 1.03127 0.96591 1.20798 0.81290 0.78864 0.87686 1.90693 1.55653 1.50257 1.48350 1.45828 1.07614 1.58520 1.24888 1.19814 0.83127 0.99722 0.89800 1.22906 0.97410 0.84864 0.90096 1.67764 1.10523 1.27250 1.20665 1.19435 0.86463 0.85333 0.91158 1.84670 1.74079 1.38419 1.31330 1.23076 1.04648 0.93870 1.01945 1.21891 0.88889 0.94318 0.90992 1.19762 0.96865 0.84200 0.92073 1.42293 1.69832 1.12888 1.12644 1.19657 1.28302 0.91928 0.97659 0.89848 1.25571 1.02831 1.01761 0.96188 1.69818 1.52594 1.33208 1.06090 0.85057 0.77311 0.79329 0.77922 1.18775 1.21942 1.22346 1.68121 1.10537 1.26250 1.18381 0.87996 0.89695 0.87624 0.87147 0.87773 0.87536 0.86607 0.75565 0.87987 0.88949 0.70591 0.80791 0.91723 0.94000 0.79529 0.93966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.88 9.38 71.98 0.68 -1.21 16 2 C 0.28 4.47 2.11 30.59 0.06 4.53 16 3 F -0.21 -4.51 16.54 44.97 0.74 -3.77 16 4 F -0.21 -4.05 16.54 44.97 0.74 -3.30 16 5 C -0.14 -2.21 4.09 30.60 0.13 -2.09 16 6 C -0.14 -2.61 5.46 29.85 0.16 -2.45 16 7 C 0.53 12.35 7.83 87.66 0.69 13.04 16 8 O -0.57 -16.51 15.98 -3.03 -0.05 -16.56 16 9 N -0.72 -16.90 5.55 -466.81 -2.59 -19.49 16 10 C 0.20 5.13 6.10 85.63 0.52 5.65 16 11 C 0.32 9.20 7.01 138.76 0.97 10.17 16 12 N -0.54 -14.89 10.36 -300.69 -3.12 -18.01 16 13 C 0.36 9.34 7.83 84.83 0.66 10.00 16 14 O -0.47 -9.29 13.58 -88.22 -1.20 -10.49 16 15 C -0.21 -5.79 9.79 22.54 0.22 -5.57 16 16 C 0.18 6.10 6.18 42.44 0.26 6.36 16 17 C 0.20 7.48 6.61 85.63 0.57 8.05 16 18 N -0.73 -35.55 5.59 -347.17 -1.94 -37.50 16 19 C -0.24 -13.00 9.99 84.04 0.84 -12.16 16 20 H 0.08 4.21 7.83 -2.91 -0.02 4.18 16 21 C -0.07 -3.93 5.50 84.86 0.47 -3.46 16 22 N -0.97 -57.31 13.06 21.65 0.28 -57.03 16 23 Si 0.97 44.64 29.55 68.60 2.03 46.67 16 24 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 25 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 26 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 27 N -0.52 -17.39 10.27 -176.24 -1.81 -19.20 16 28 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.11 1.58 8.10 -2.39 -0.02 1.56 16 32 H 0.10 1.66 8.10 -2.39 -0.02 1.64 16 33 H 0.11 1.96 7.80 -2.39 -0.02 1.94 16 34 H 0.12 1.80 7.80 -2.38 -0.02 1.78 16 35 H 0.41 9.12 8.46 -92.71 -0.78 8.33 16 36 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 37 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 38 H 0.43 4.05 9.06 -74.06 -0.67 3.37 16 39 H 0.17 4.04 8.06 -2.91 -0.02 4.02 16 40 H 0.07 2.20 8.06 -2.38 -0.02 2.18 16 41 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 42 H 0.37 19.60 7.66 -92.71 -0.71 18.89 16 43 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 Total: -1.00 -71.94 384.34 -1.75 -73.69 By element: Atomic # 1 Polarization: 35.19 SS G_CDS: -1.07 Total: 34.12 kcal Atomic # 6 Polarization: 24.64 SS G_CDS: 6.23 Total: 30.87 kcal Atomic # 7 Polarization: -142.05 SS G_CDS: -9.17 Total: -151.22 kcal Atomic # 8 Polarization: -25.80 SS G_CDS: -1.25 Total: -27.05 kcal Atomic # 9 Polarization: -8.56 SS G_CDS: 1.49 Total: -7.07 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -71.94 -1.75 -73.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691422315.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.511 kcal (2) G-P(sol) polarization free energy of solvation -71.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds