Wall clock time and date at job start Wed Apr 1 2020 03:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47470 * 251.02121 * 3 2 1 5 5 O 1.42895 * 109.47304 * 179.97438 * 4 3 2 6 6 C 1.35717 * 117.00116 * 180.02562 * 5 4 3 7 7 C 1.38988 * 119.91418 * 180.02562 * 6 5 4 8 8 C 1.37702 * 120.08853 * 179.97438 * 7 6 5 9 9 C 1.39732 * 119.91144 * 0.02562 * 8 7 6 10 10 C 1.47598 * 120.08568 * 180.02562 * 9 8 7 11 11 O 1.21584 * 120.00336 * 359.97438 * 10 9 8 12 12 N 1.34781 * 120.00139 * 179.97438 * 10 9 8 13 13 C 1.46498 * 120.00147 * 179.97438 * 12 10 9 14 14 C 1.53004 * 109.46880 * 180.02562 * 13 12 10 15 15 O 1.42895 * 113.41757 * 51.79937 * 14 13 12 16 16 C 1.53492 * 114.20662 * 185.00239 * 14 13 12 17 17 N 1.47069 * 87.98838 * 87.51493 * 16 14 13 18 18 C 1.36936 * 136.06301 * 207.07784 * 17 16 14 19 19 H 1.08006 * 119.99418 * 7.84113 * 18 17 16 20 20 C 1.38804 * 120.00212 * 187.83009 * 18 17 16 21 21 N 1.31623 * 119.99983 * 195.04824 * 20 18 17 22 22 Si 1.86806 * 120.00036 * 15.33279 * 20 18 17 23 23 H 1.48501 * 109.46966 * 269.72008 * 22 20 18 24 24 H 1.48499 * 109.46852 * 29.72057 * 22 20 18 25 25 H 1.48499 * 109.47257 * 149.71952 * 22 20 18 26 26 C 1.47077 * 87.88174 * 27.34535 * 17 16 14 27 27 C 1.39732 * 119.82225 * 0.27283 * 9 8 7 28 28 C 1.37700 * 119.91224 * 359.46866 * 27 9 8 29 29 H 4.44646 * 5.63375 * 179.97438 * 4 1 2 30 30 H 1.09001 * 109.47291 * 131.02356 * 3 2 1 31 31 H 1.09002 * 109.47078 * 11.01976 * 3 2 1 32 32 H 1.09001 * 109.46671 * 59.99856 * 4 3 2 33 33 H 1.08996 * 109.47296 * 299.99946 * 4 3 2 34 34 H 1.08004 * 119.95751 * 359.97241 * 7 6 5 35 35 H 1.08007 * 120.04117 * 179.97438 * 8 7 6 36 36 H 0.96999 * 119.99607 * 0.02562 * 12 10 9 37 37 H 1.08996 * 109.46773 * 60.00671 * 13 12 10 38 38 H 1.09001 * 109.47203 * 300.00143 * 13 12 10 39 39 H 0.96704 * 114.00313 * 313.20208 * 15 14 13 40 40 H 1.08997 * 113.46930 * 332.74017 * 16 14 13 41 41 H 1.09004 * 113.52079 * 202.30454 * 16 14 13 42 42 H 0.96999 * 120.00066 * 355.19588 * 21 20 18 43 43 H 1.08999 * 113.46528 * 87.43645 * 26 17 16 44 44 H 1.08996 * 113.46472 * 217.87933 * 26 17 16 45 45 H 1.08006 * 120.04275 * 179.70609 * 27 9 8 46 46 H 1.08004 * 119.95425 * 180.25147 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1558 0.4700 1.3641 5 8 4.5848 0.4701 1.3642 6 6 5.2008 0.8630 2.5079 7 6 6.5889 0.8865 2.5747 8 6 7.2177 1.2851 3.7331 9 6 6.4583 1.6657 4.8426 10 6 7.1282 2.0942 6.0860 11 8 8.3424 2.1158 6.1461 12 7 6.3941 2.4614 7.1550 13 6 7.0590 2.8861 8.3894 14 6 6.0051 3.2458 9.4386 15 8 5.0269 2.2228 9.6348 16 6 6.5825 3.8221 10.7388 17 7 6.5280 5.1518 10.1126 18 6 7.2095 6.3322 10.2440 19 1 8.0897 6.3810 10.8681 20 6 6.7692 7.4660 9.5751 21 7 7.5634 8.5086 9.4538 22 14 5.0467 7.5150 8.8538 23 1 5.0809 7.0139 7.4563 24 1 4.1458 6.6576 9.6652 25 1 4.5443 8.9124 8.8665 26 6 5.4150 4.6577 9.2879 27 6 5.0630 1.6347 4.7734 28 6 4.4418 1.2400 3.6096 29 1 -1.0500 0.0002 -0.0001 30 1 3.0090 0.6753 -0.7753 31 1 3.0097 -1.0079 -0.1964 32 1 2.7928 -0.2047 2.1394 33 1 2.7921 1.4785 1.5606 34 1 7.1752 0.5918 1.7169 35 1 8.2964 1.3027 3.7843 36 1 5.4254 2.4438 7.1072 37 1 7.6813 3.7574 8.1855 38 1 7.6822 2.0742 8.7643 39 1 4.6651 1.8619 8.8139 40 1 7.5966 3.4836 10.9509 41 1 5.9157 3.7178 11.5947 42 1 8.4293 8.5121 9.8909 43 1 4.4398 4.7732 9.7608 44 1 5.4345 5.0309 8.2640 45 1 4.4726 1.9236 5.6304 46 1 3.3634 1.2197 3.5541 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699912992.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:13 Heat of formation + Delta-G solvation = 26.645652 kcal Electronic energy + Delta-G solvation = -28773.823311 eV Core-core repulsion = 24633.036268 eV Total energy + Delta-G solvation = -4140.787043 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.80097 -39.99563 -39.05318 -37.45799 -35.42021 -35.07751 -34.25831 -32.31434 -31.67187 -31.09111 -30.15873 -28.39196 -26.29533 -25.49479 -24.94651 -23.60768 -22.38091 -21.69656 -20.60331 -19.38332 -19.13426 -18.48584 -17.99490 -17.48255 -16.79824 -16.79094 -16.48259 -15.64649 -15.43923 -15.17842 -15.01498 -14.50680 -14.39545 -14.35903 -14.06598 -13.95023 -13.79631 -13.52519 -13.34329 -13.03744 -12.87375 -12.62873 -12.50457 -12.19534 -11.99134 -11.75066 -11.39944 -11.26424 -11.13653 -10.85481 -10.71441 -10.66403 -10.41080 -10.08351 -9.94191 -9.42630 -9.39099 -9.20323 -9.01122 -8.76296 -8.57896 -7.26974 -6.35969 -3.29304 0.64345 0.99003 2.04517 2.28258 2.74425 2.74681 3.07590 3.35426 3.43589 3.57710 3.64509 3.92330 4.21934 4.24923 4.35718 4.41342 4.50933 4.54399 4.58046 4.69030 4.77753 4.78363 4.87580 4.97487 5.02364 5.19039 5.19570 5.31477 5.42034 5.45163 5.59139 5.67919 5.76186 5.88075 6.02078 6.09048 6.14684 6.21560 6.23290 6.27259 6.29452 6.42471 6.59148 6.89398 7.00373 7.03695 7.41718 7.72992 8.19250 8.20168 8.91931 9.43985 10.27810 11.14322 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.012072 B = 0.002292 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2318.808596 B =12213.472798 C =12928.749180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.195 4.195 3 C -0.008 4.008 4 C 0.062 3.938 5 O -0.311 6.311 6 C 0.154 3.846 7 C -0.159 4.159 8 C -0.018 4.018 9 C -0.168 4.168 10 C 0.562 3.438 11 O -0.534 6.534 12 N -0.725 5.725 13 C 0.125 3.875 14 C 0.065 3.935 15 O -0.546 6.546 16 C 0.139 3.861 17 N -0.615 5.615 18 C -0.305 4.305 19 H 0.085 0.915 20 C -0.021 4.021 21 N -0.927 5.927 22 Si 1.060 2.940 23 H -0.294 1.294 24 H -0.281 1.281 25 H -0.294 1.294 26 C 0.081 3.919 27 C -0.044 4.044 28 C -0.216 4.216 29 H 0.221 0.779 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.139 0.861 35 H 0.145 0.855 36 H 0.393 0.607 37 H 0.098 0.902 38 H 0.076 0.924 39 H 0.363 0.637 40 H 0.055 0.945 41 H 0.051 0.949 42 H 0.263 0.737 43 H 0.055 0.945 44 H 0.053 0.947 45 H 0.130 0.870 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.202 -20.777 -17.765 29.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.195 4.195 3 C -0.045 4.045 4 C -0.013 4.013 5 O -0.224 6.224 6 C 0.108 3.892 7 C -0.177 4.177 8 C -0.037 4.037 9 C -0.172 4.172 10 C 0.350 3.650 11 O -0.411 6.411 12 N -0.378 5.378 13 C 0.002 3.998 14 C 0.023 3.977 15 O -0.349 6.349 16 C 0.012 3.988 17 N -0.345 5.345 18 C -0.431 4.431 19 H 0.103 0.897 20 C -0.221 4.221 21 N -0.569 5.569 22 Si 0.892 3.108 23 H -0.222 1.222 24 H -0.208 1.208 25 H -0.221 1.221 26 C -0.045 4.045 27 C -0.063 4.063 28 C -0.235 4.235 29 H 0.237 0.763 30 H 0.118 0.882 31 H 0.117 0.883 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.157 0.843 35 H 0.163 0.837 36 H 0.228 0.772 37 H 0.116 0.884 38 H 0.094 0.906 39 H 0.210 0.790 40 H 0.073 0.927 41 H 0.068 0.932 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.071 0.929 45 H 0.148 0.852 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -11.989 -19.519 -18.090 29.188 hybrid contribution -0.167 -0.846 0.581 1.039 sum -12.155 -20.364 -17.509 29.479 Atomic orbital electron populations 1.25008 0.96000 1.00393 0.99068 1.22571 0.93937 1.01156 1.01847 1.18423 0.84928 1.04179 0.96961 1.22736 0.78341 1.02097 0.98139 1.85968 1.21077 1.81660 1.33715 1.19202 0.92301 0.92813 0.84894 1.20411 0.91115 1.06497 0.99687 1.21112 1.00906 0.91638 0.90069 1.19884 0.93593 1.08166 0.95518 1.18077 0.86911 0.77163 0.82889 1.90799 1.13415 1.53644 1.83291 1.45828 1.09950 1.68333 1.13685 1.21601 0.94757 1.01627 0.81862 1.23684 0.89146 0.86581 0.98307 1.86611 1.58064 1.55942 1.34296 1.22295 0.98556 0.85572 0.92343 1.45902 1.36657 1.09771 1.42139 1.20093 1.06744 0.84895 1.31361 0.89686 1.25773 1.05245 0.91826 0.99249 1.70896 1.10994 1.32135 1.42848 0.83805 0.75973 0.75287 0.75757 1.22166 1.20752 1.22116 1.23388 0.93551 0.90861 0.96718 1.21098 0.93319 0.94552 0.97297 1.21167 1.00353 1.08092 0.93859 0.76257 0.88235 0.88278 0.91184 0.91113 0.84336 0.83707 0.77186 0.88385 0.90561 0.79036 0.92651 0.93165 0.92673 0.92710 0.92901 0.85248 0.84808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.04 19.25 29.55 0.57 -0.47 16 2 C -0.19 -1.23 13.34 -37.12 -0.50 -1.73 16 3 C -0.01 -0.04 6.07 -29.52 -0.18 -0.22 16 4 C 0.06 0.36 4.69 37.16 0.17 0.54 16 5 O -0.31 -2.52 10.12 -18.86 -0.19 -2.71 16 6 C 0.15 1.40 6.70 -39.02 -0.26 1.14 16 7 C -0.16 -1.49 9.97 -39.50 -0.39 -1.89 16 8 C -0.02 -0.20 9.58 -39.22 -0.38 -0.58 16 9 C -0.17 -2.00 5.87 -104.96 -0.62 -2.61 16 10 C 0.56 8.37 7.76 -12.44 -0.10 8.28 16 11 O -0.53 -9.99 16.34 5.29 0.09 -9.90 16 12 N -0.73 -9.80 5.27 -61.33 -0.32 -10.13 16 13 C 0.12 2.06 5.33 -4.04 -0.02 2.03 16 14 C 0.07 1.10 1.74 -89.97 -0.16 0.95 16 15 O -0.55 -7.82 13.56 -35.23 -0.48 -8.29 16 16 C 0.14 2.76 8.10 -8.50 -0.07 2.69 16 17 N -0.61 -14.84 3.40 -184.56 -0.63 -15.47 16 18 C -0.31 -8.68 11.03 -15.06 -0.17 -8.85 16 19 H 0.09 2.54 8.06 -52.48 -0.42 2.12 16 20 C -0.02 -0.63 5.50 -17.43 -0.10 -0.72 16 21 N -0.93 -29.15 13.70 55.49 0.76 -28.39 16 22 Si 1.06 26.35 25.51 -169.99 -4.34 22.02 16 23 H -0.29 -7.00 6.97 56.52 0.39 -6.60 16 24 H -0.28 -6.48 5.65 56.52 0.32 -6.16 16 25 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 26 C 0.08 1.66 5.03 -8.36 -0.04 1.62 16 27 C -0.04 -0.41 9.53 -39.22 -0.37 -0.78 16 28 C -0.22 -1.81 9.01 -39.50 -0.36 -2.17 16 29 H 0.22 0.52 7.80 -54.09 -0.42 0.09 16 30 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.36 7.65 -51.93 -0.40 -0.04 16 33 H 0.07 0.39 7.66 -51.93 -0.40 -0.01 16 34 H 0.14 1.05 8.06 -52.48 -0.42 0.63 16 35 H 0.15 1.59 7.64 -52.48 -0.40 1.19 16 36 H 0.39 4.02 5.26 -40.82 -0.21 3.80 16 37 H 0.10 1.98 7.94 -51.93 -0.41 1.57 16 38 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 39 H 0.36 3.56 7.50 45.56 0.34 3.91 16 40 H 0.06 1.05 8.12 -51.93 -0.42 0.63 16 41 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.26 8.17 8.73 -40.82 -0.36 7.81 16 43 H 0.06 1.13 7.02 -51.93 -0.36 0.76 16 44 H 0.05 1.10 6.22 -51.93 -0.32 0.78 16 45 H 0.13 0.88 6.40 -52.48 -0.34 0.55 16 46 H 0.13 0.82 6.28 -52.48 -0.33 0.49 16 LS Contribution 389.04 15.07 5.86 5.86 Total: -1.00 -36.22 389.04 -7.66 -43.87 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -5.46 Total: 5.91 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: -2.96 Total: -2.77 kcal Atomic # 7 Polarization: -53.80 SS G_CDS: -0.19 Total: -53.99 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: -0.58 Total: -20.91 kcal Atomic # 14 Polarization: 26.35 SS G_CDS: -4.34 Total: 22.02 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.22 -7.66 -43.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699912992.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.521 kcal (2) G-P(sol) polarization free energy of solvation -36.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds