Wall clock time and date at job start Wed Apr 1 2020 03:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47470 * 251.02121 * 3 2 1 5 5 O 1.42895 * 109.47304 * 179.97438 * 4 3 2 6 6 C 1.35717 * 117.00116 * 180.02562 * 5 4 3 7 7 C 1.38988 * 119.91418 * 180.02562 * 6 5 4 8 8 C 1.37702 * 120.08853 * 179.97438 * 7 6 5 9 9 C 1.39732 * 119.91144 * 0.02562 * 8 7 6 10 10 C 1.47598 * 120.08568 * 180.02562 * 9 8 7 11 11 O 1.21584 * 120.00336 * 359.97438 * 10 9 8 12 12 N 1.34781 * 120.00139 * 179.97438 * 10 9 8 13 13 C 1.46498 * 120.00147 * 179.97438 * 12 10 9 14 14 C 1.53004 * 109.46880 * 180.02562 * 13 12 10 15 15 O 1.42895 * 113.41757 * 51.79937 * 14 13 12 16 16 C 1.53492 * 114.20662 * 185.00239 * 14 13 12 17 17 N 1.47069 * 87.98838 * 87.51493 * 16 14 13 18 18 C 1.36936 * 136.06301 * 207.07784 * 17 16 14 19 19 H 1.08006 * 119.99418 * 7.84113 * 18 17 16 20 20 C 1.38804 * 120.00212 * 187.83009 * 18 17 16 21 21 N 1.31623 * 119.99983 * 195.04824 * 20 18 17 22 22 Si 1.86806 * 120.00036 * 15.33279 * 20 18 17 23 23 H 1.48501 * 109.46966 * 269.72008 * 22 20 18 24 24 H 1.48499 * 109.46852 * 29.72057 * 22 20 18 25 25 H 1.48499 * 109.47257 * 149.71952 * 22 20 18 26 26 C 1.47077 * 87.88174 * 27.34535 * 17 16 14 27 27 C 1.39732 * 119.82225 * 0.27283 * 9 8 7 28 28 C 1.37700 * 119.91224 * 359.46866 * 27 9 8 29 29 H 4.44646 * 5.63375 * 179.97438 * 4 1 2 30 30 H 1.09001 * 109.47291 * 131.02356 * 3 2 1 31 31 H 1.09002 * 109.47078 * 11.01976 * 3 2 1 32 32 H 1.09001 * 109.46671 * 59.99856 * 4 3 2 33 33 H 1.08996 * 109.47296 * 299.99946 * 4 3 2 34 34 H 1.08004 * 119.95751 * 359.97241 * 7 6 5 35 35 H 1.08007 * 120.04117 * 179.97438 * 8 7 6 36 36 H 0.96999 * 119.99607 * 0.02562 * 12 10 9 37 37 H 1.08996 * 109.46773 * 60.00671 * 13 12 10 38 38 H 1.09001 * 109.47203 * 300.00143 * 13 12 10 39 39 H 0.96704 * 114.00313 * 313.20208 * 15 14 13 40 40 H 1.08997 * 113.46930 * 332.74017 * 16 14 13 41 41 H 1.09004 * 113.52079 * 202.30454 * 16 14 13 42 42 H 0.96999 * 120.00066 * 355.19588 * 21 20 18 43 43 H 1.08999 * 113.46528 * 87.43645 * 26 17 16 44 44 H 1.08996 * 113.46472 * 217.87933 * 26 17 16 45 45 H 1.08006 * 120.04275 * 179.70609 * 27 9 8 46 46 H 1.08004 * 119.95425 * 180.25147 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1558 0.4700 1.3641 5 8 4.5848 0.4701 1.3642 6 6 5.2008 0.8630 2.5079 7 6 6.5889 0.8865 2.5747 8 6 7.2177 1.2851 3.7331 9 6 6.4583 1.6657 4.8426 10 6 7.1282 2.0942 6.0860 11 8 8.3424 2.1158 6.1461 12 7 6.3941 2.4614 7.1550 13 6 7.0590 2.8861 8.3894 14 6 6.0051 3.2458 9.4386 15 8 5.0269 2.2228 9.6348 16 6 6.5825 3.8221 10.7388 17 7 6.5280 5.1518 10.1126 18 6 7.2095 6.3322 10.2440 19 1 8.0897 6.3810 10.8681 20 6 6.7692 7.4660 9.5751 21 7 7.5634 8.5086 9.4538 22 14 5.0467 7.5150 8.8538 23 1 5.0809 7.0139 7.4563 24 1 4.1458 6.6576 9.6652 25 1 4.5443 8.9124 8.8665 26 6 5.4150 4.6577 9.2879 27 6 5.0630 1.6347 4.7734 28 6 4.4418 1.2400 3.6096 29 1 -1.0500 0.0002 -0.0001 30 1 3.0090 0.6753 -0.7753 31 1 3.0097 -1.0079 -0.1964 32 1 2.7928 -0.2047 2.1394 33 1 2.7921 1.4785 1.5606 34 1 7.1752 0.5918 1.7169 35 1 8.2964 1.3027 3.7843 36 1 5.4254 2.4438 7.1072 37 1 7.6813 3.7574 8.1855 38 1 7.6822 2.0742 8.7643 39 1 4.6651 1.8619 8.8139 40 1 7.5966 3.4836 10.9509 41 1 5.9157 3.7178 11.5947 42 1 8.4293 8.5121 9.8909 43 1 4.4398 4.7732 9.7608 44 1 5.4345 5.0309 8.2640 45 1 4.4726 1.9236 5.6304 46 1 3.3634 1.2197 3.5541 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699912992.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:12 Heat of formation + Delta-G solvation = -0.918600 kcal Electronic energy + Delta-G solvation = -28775.018587 eV Core-core repulsion = 24633.036268 eV Total energy + Delta-G solvation = -4141.982319 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.71052 -41.13117 -40.27448 -38.25664 -36.88455 -35.54810 -35.42429 -34.43217 -32.37941 -31.76249 -30.89461 -29.97362 -27.79600 -27.11897 -25.53105 -24.50181 -23.66147 -22.88883 -21.67972 -20.94266 -19.81725 -19.52247 -19.29896 -18.58827 -18.01867 -17.53991 -17.28163 -16.86551 -16.61190 -16.48349 -16.11187 -15.69790 -15.50047 -15.29223 -15.13996 -14.91406 -14.84738 -14.62857 -14.45506 -14.32517 -13.75345 -13.63128 -13.58546 -13.48406 -13.20176 -13.11776 -12.79089 -12.57386 -12.00070 -11.97590 -11.89201 -11.83712 -11.44089 -11.25666 -11.19318 -11.04533 -10.94853 -10.65782 -10.30674 -10.13640 -9.32722 -9.30546 -8.66115 -5.51141 -0.17690 0.28921 1.36197 1.49693 1.59843 1.64180 1.75763 1.88751 1.93694 2.23411 2.52230 2.74934 2.80115 3.11361 3.19011 3.27721 3.57550 3.61670 3.68383 3.69044 3.82957 3.98447 4.01364 4.16185 4.22117 4.30815 4.37240 4.51636 4.53523 4.59943 4.63564 4.71156 4.76541 4.83949 4.84705 4.92664 5.05999 5.07957 5.13087 5.14759 5.17450 5.20195 5.32480 5.58515 5.91950 6.27423 6.37178 6.65591 6.65824 6.69974 7.09940 7.28387 8.20421 8.85954 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.012072 B = 0.002292 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2318.808596 B =12213.472798 C =12928.749180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.224 4.224 3 C -0.007 4.007 4 C 0.059 3.941 5 O -0.316 6.316 6 C 0.156 3.844 7 C -0.163 4.163 8 C -0.030 4.030 9 C -0.191 4.191 10 C 0.560 3.440 11 O -0.583 6.583 12 N -0.712 5.712 13 C 0.135 3.865 14 C 0.105 3.895 15 O -0.538 6.538 16 C 0.131 3.869 17 N -0.646 5.646 18 C -0.290 4.290 19 H 0.051 0.949 20 C -0.084 4.084 21 N -0.965 5.965 22 Si 1.101 2.899 23 H -0.276 1.276 24 H -0.249 1.249 25 H -0.302 1.302 26 C 0.076 3.924 27 C -0.036 4.036 28 C -0.213 4.213 29 H 0.244 0.756 30 H 0.102 0.898 31 H 0.105 0.895 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.152 0.848 35 H 0.134 0.866 36 H 0.412 0.588 37 H 0.056 0.944 38 H 0.081 0.919 39 H 0.389 0.611 40 H 0.057 0.943 41 H 0.064 0.936 42 H 0.247 0.753 43 H 0.068 0.932 44 H 0.051 0.949 45 H 0.158 0.842 46 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.152 -23.233 -19.044 34.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.224 4.224 3 C -0.043 4.043 4 C -0.016 4.016 5 O -0.229 6.229 6 C 0.110 3.890 7 C -0.182 4.182 8 C -0.049 4.049 9 C -0.194 4.194 10 C 0.350 3.650 11 O -0.464 6.464 12 N -0.366 5.366 13 C 0.010 3.990 14 C 0.062 3.938 15 O -0.344 6.344 16 C 0.005 3.995 17 N -0.376 5.376 18 C -0.417 4.417 19 H 0.069 0.931 20 C -0.276 4.276 21 N -0.610 5.610 22 Si 0.925 3.075 23 H -0.203 1.203 24 H -0.174 1.174 25 H -0.230 1.230 26 C -0.049 4.049 27 C -0.055 4.055 28 C -0.231 4.231 29 H 0.261 0.739 30 H 0.121 0.879 31 H 0.123 0.877 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.169 0.831 35 H 0.152 0.848 36 H 0.251 0.749 37 H 0.074 0.926 38 H 0.099 0.901 39 H 0.239 0.761 40 H 0.076 0.924 41 H 0.081 0.919 42 H 0.056 0.944 43 H 0.086 0.914 44 H 0.069 0.931 45 H 0.175 0.825 46 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -15.999 -22.056 -19.376 33.434 hybrid contribution 1.037 -0.248 0.943 1.423 sum -14.961 -22.304 -18.433 32.574 Atomic orbital electron populations 1.25759 0.96918 0.99576 0.98144 1.22976 0.94664 1.01993 1.02747 1.18419 0.84542 1.04639 0.96718 1.22905 0.76968 1.02790 0.98931 1.85969 1.22476 1.81220 1.33276 1.19349 0.92296 0.91937 0.85461 1.20519 0.91817 1.06359 0.99495 1.21109 1.00626 0.92356 0.90766 1.19726 0.94871 1.10579 0.94252 1.18602 0.86452 0.76158 0.83787 1.90773 1.15661 1.55839 1.84159 1.45610 1.10822 1.67682 1.12447 1.21266 0.94536 1.00146 0.83023 1.22855 0.88852 0.85939 0.96134 1.86577 1.57036 1.54606 1.36170 1.22501 0.99424 0.83511 0.94095 1.45828 1.37967 1.09627 1.44185 1.19899 1.05796 0.86771 1.29251 0.93084 1.27151 1.08318 0.91621 1.00536 1.71012 1.11019 1.33877 1.45096 0.83348 0.72128 0.75468 0.76532 1.20288 1.17360 1.23038 1.23603 0.92887 0.92498 0.95951 1.21357 0.92104 0.93426 0.98588 1.21464 1.01711 1.06940 0.93000 0.73932 0.87937 0.87684 0.90111 0.90508 0.83052 0.84848 0.74941 0.92560 0.90091 0.76075 0.92449 0.91878 0.94395 0.91405 0.93080 0.82478 0.82038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.62 19.25 74.32 1.43 -0.19 16 2 C -0.22 -2.36 13.34 31.13 0.42 -1.94 16 3 C -0.01 -0.05 6.07 28.79 0.17 0.12 16 4 C 0.06 0.51 4.69 71.98 0.34 0.85 16 5 O -0.32 -4.30 10.12 -90.39 -0.92 -5.22 16 6 C 0.16 2.44 6.70 22.63 0.15 2.59 16 7 C -0.16 -2.86 9.97 22.32 0.22 -2.64 16 8 C -0.03 -0.64 9.58 22.50 0.22 -0.43 16 9 C -0.19 -4.27 5.87 -20.08 -0.12 -4.39 16 10 C 0.56 16.33 7.76 86.71 0.67 17.00 16 11 O -0.58 -22.44 16.34 -3.98 -0.07 -22.50 16 12 N -0.71 -17.74 5.27 -466.20 -2.46 -20.20 16 13 C 0.13 4.28 5.33 86.38 0.46 4.74 16 14 C 0.11 3.27 1.74 -10.37 -0.02 3.25 16 15 O -0.54 -12.81 13.56 -148.98 -2.02 -14.83 16 16 C 0.13 4.97 8.10 83.18 0.67 5.65 16 17 N -0.65 -30.78 3.40 -738.30 -2.51 -33.29 16 18 C -0.29 -16.92 11.03 84.03 0.93 -15.99 16 19 H 0.05 3.23 8.06 -2.91 -0.02 3.21 16 20 C -0.08 -5.05 5.50 84.86 0.47 -4.58 16 21 N -0.97 -63.01 13.70 21.65 0.30 -62.71 16 22 Si 1.10 52.50 25.51 68.60 1.75 54.25 16 23 H -0.28 -12.28 6.97 99.48 0.69 -11.59 16 24 H -0.25 -10.44 5.65 99.48 0.56 -9.88 16 25 H -0.30 -14.76 7.11 99.48 0.71 -14.05 16 26 C 0.08 2.89 5.03 83.27 0.42 3.30 16 27 C -0.04 -0.55 9.53 22.50 0.21 -0.33 16 28 C -0.21 -2.78 9.01 22.32 0.20 -2.58 16 29 H 0.24 0.46 7.80 -4.42 -0.03 0.42 16 30 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.08 0.55 7.65 -2.39 -0.02 0.53 16 33 H 0.08 0.60 7.66 -2.39 -0.02 0.58 16 34 H 0.15 2.13 8.06 -2.91 -0.02 2.11 16 35 H 0.13 3.09 7.64 -2.91 -0.02 3.07 16 36 H 0.41 6.80 5.26 -92.71 -0.49 6.32 16 37 H 0.06 2.31 7.94 -2.39 -0.02 2.29 16 38 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 39 H 0.39 5.39 7.50 -74.05 -0.56 4.83 16 40 H 0.06 2.14 8.12 -2.39 -0.02 2.12 16 41 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 42 H 0.25 16.24 8.73 -92.71 -0.81 15.43 16 43 H 0.07 2.47 7.02 -2.39 -0.02 2.45 16 44 H 0.05 1.98 6.22 -2.39 -0.01 1.96 16 45 H 0.16 1.37 6.40 -2.91 -0.02 1.35 16 46 H 0.16 1.19 6.28 -2.91 -0.02 1.18 16 Total: -1.00 -82.29 389.04 0.71 -81.58 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: -0.22 Total: 18.48 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: 6.85 Total: 4.43 kcal Atomic # 7 Polarization: -111.53 SS G_CDS: -4.67 Total: -116.20 kcal Atomic # 8 Polarization: -39.55 SS G_CDS: -3.00 Total: -42.55 kcal Atomic # 14 Polarization: 52.50 SS G_CDS: 1.75 Total: 54.25 kcal Total: -82.29 0.71 -81.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699912992.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.657 kcal (2) G-P(sol) polarization free energy of solvation -82.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds