Wall clock time and date at job start Wed Apr 1 2020 02:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30272 * 126.28554 * 2 1 4 4 N 1.28661 * 109.38114 * 179.97438 * 3 2 1 5 5 C 1.30275 * 109.38260 * 359.97438 * 4 3 2 6 6 C 1.50700 * 126.28126 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.47300 * 90.02463 * 6 5 4 8 8 O 1.21277 * 119.99619 * 359.97438 * 7 6 5 9 9 N 1.34769 * 119.99990 * 179.72198 * 7 6 5 10 10 C 1.46500 * 119.99945 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.47442 * 179.97438 * 10 9 7 12 12 H 1.08997 * 109.50081 * 305.06808 * 11 10 9 13 13 C 1.53194 * 109.49527 * 65.16105 * 11 10 9 14 14 N 1.46933 * 108.77357 * 174.58553 * 13 11 10 15 15 C 1.36936 * 120.62647 * 126.41595 * 14 13 11 16 16 H 1.08002 * 120.00204 * 331.81473 * 15 14 13 17 17 C 1.38813 * 119.99923 * 151.80979 * 15 14 13 18 18 N 1.31611 * 120.00060 * 343.07899 * 17 15 14 19 19 Si 1.86802 * 120.00008 * 163.07371 * 17 15 14 20 20 H 1.48501 * 109.47057 * 0.02562 * 19 17 15 21 21 H 1.48495 * 109.47135 * 120.00242 * 19 17 15 22 22 H 1.48502 * 109.47209 * 240.00559 * 19 17 15 23 23 C 1.46913 * 118.74132 * 306.39128 * 14 13 11 24 24 C 1.53199 * 108.77594 * 53.61149 * 23 14 13 25 25 C 1.53035 * 109.50193 * 184.99852 * 11 10 9 26 26 F 1.39902 * 109.46169 * 298.70823 * 25 11 10 27 27 F 1.39900 * 109.45774 * 58.67935 * 25 11 10 28 28 O 1.34359 * 107.43398 * 0.24036 * 5 4 3 29 29 H 1.09005 * 109.46975 * 89.97728 * 1 2 3 30 30 H 1.08990 * 109.47308 * 209.97568 * 1 2 3 31 31 H 1.08995 * 109.46803 * 329.97791 * 1 2 3 32 32 H 1.09003 * 109.47337 * 330.02467 * 6 5 4 33 33 H 1.09000 * 109.47330 * 210.02506 * 6 5 4 34 34 H 0.97005 * 120.00405 * 0.02562 * 9 7 6 35 35 H 1.09000 * 109.47191 * 300.00078 * 10 9 7 36 36 H 1.08998 * 109.47097 * 60.00498 * 10 9 7 37 37 H 1.08999 * 109.58845 * 294.37196 * 13 11 10 38 38 H 1.09005 * 109.58779 * 54.80615 * 13 11 10 39 39 H 0.97004 * 120.00191 * 179.97438 * 18 17 15 40 40 H 1.08993 * 109.59251 * 293.82365 * 23 14 13 41 41 H 1.09000 * 109.59141 * 173.39653 * 23 14 13 42 42 H 1.08995 * 109.49906 * 185.41268 * 24 23 14 43 43 H 1.08995 * 109.52121 * 65.32736 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2780 1.0501 0.0000 4 7 3.5090 0.6760 0.0005 5 6 3.5653 -0.6256 0.0015 6 6 4.8176 -1.4640 0.0018 7 6 5.2350 -1.7430 1.4227 8 8 4.5804 -1.3038 2.3443 9 7 6.3329 -2.4847 1.6692 10 6 6.7390 -2.7555 3.0505 11 6 8.0060 -3.6131 3.0509 12 1 7.8352 -4.5147 2.4628 13 6 9.1633 -2.8158 2.4412 14 7 10.3978 -3.6025 2.5675 15 6 11.1736 -3.8641 1.4699 16 1 10.7224 -3.9183 0.4901 17 6 12.5401 -4.0595 1.6165 18 7 13.1452 -3.6751 2.7202 19 14 13.5201 -4.8683 0.2472 20 1 12.6126 -5.2045 -0.8791 21 1 14.5720 -3.9337 -0.2273 22 1 14.1549 -6.1093 0.7593 23 6 10.7842 -4.1025 3.8937 24 6 9.6088 -4.8855 4.4872 25 6 8.3603 -4.0004 4.4884 26 9 8.6097 -2.8437 5.2348 27 9 7.2926 -4.7019 5.0587 28 8 2.3021 -1.0832 -0.0039 29 1 -0.3633 0.0004 -1.0277 30 1 -0.3633 -0.8901 0.5134 31 1 -0.3633 0.8898 0.5142 32 1 5.6147 -0.9268 -0.5122 33 1 4.6244 -2.4058 -0.5117 34 1 6.8546 -2.8388 0.9321 35 1 6.9371 -1.8137 3.5622 36 1 5.9401 -3.2881 3.5663 37 1 8.9591 -2.6227 1.3880 38 1 9.2762 -1.8709 2.9729 39 1 14.1000 -3.8119 2.8228 40 1 11.0292 -3.2627 4.5438 41 1 11.6496 -4.7585 3.7991 42 1 9.8469 -5.1802 5.5092 43 1 9.4232 -5.7754 3.8858 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716911073.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:08:34 Heat of formation + Delta-G solvation = -79.840676 kcal Electronic energy + Delta-G solvation = -30395.784411 eV Core-core repulsion = 25728.442996 eV Total energy + Delta-G solvation = -4667.341415 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -48.58263 -46.53367 -44.43842 -39.92418 -37.46936 -36.37044 -35.17140 -33.89817 -32.81657 -31.60153 -30.64663 -30.21242 -27.66744 -25.69116 -25.18261 -23.30646 -22.78932 -22.44127 -21.52784 -20.76294 -19.62145 -18.13715 -17.50532 -17.24412 -16.87535 -16.79938 -16.42240 -15.90728 -15.71937 -15.45782 -15.16528 -14.84234 -14.52165 -14.29921 -13.99251 -13.63924 -13.51503 -13.32740 -13.27398 -13.17401 -13.11486 -12.84830 -12.58609 -12.53130 -12.27314 -12.04564 -11.74926 -11.66863 -11.61115 -11.29089 -11.17790 -10.89151 -10.69440 -10.56676 -10.33205 -10.12899 -9.96433 -9.79231 -9.62999 -9.21045 -8.66866 -6.95224 -5.98692 -3.44059 0.87599 1.91447 2.15163 2.35878 2.94921 3.25930 3.34111 3.35929 3.50059 4.06168 4.12909 4.31562 4.39043 4.47495 4.56878 4.62234 4.72244 4.83052 4.85118 4.93897 5.08862 5.13883 5.21498 5.22188 5.29945 5.35046 5.46608 5.48663 5.56349 5.83211 5.91540 6.09161 6.20183 6.21645 6.25976 6.36925 6.62834 7.05199 7.24973 7.40285 7.60375 7.95202 8.08572 8.21541 8.97500 9.60024 10.15277 11.10405 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.014504 B = 0.002536 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.079580 B =11040.382087 C =12435.484596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.162 3.838 3 N -0.288 5.288 4 N -0.272 5.272 5 C 0.185 3.815 6 C -0.047 4.047 7 C 0.518 3.482 8 O -0.531 6.531 9 N -0.715 5.715 10 C 0.125 3.875 11 C -0.155 4.155 12 H 0.103 0.897 13 C 0.152 3.848 14 N -0.590 5.590 15 C -0.262 4.262 16 H 0.070 0.930 17 C 0.007 3.993 18 N -0.898 5.898 19 Si 0.905 3.095 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.288 1.288 23 C 0.170 3.830 24 C -0.179 4.179 25 C 0.300 3.700 26 F -0.199 7.199 27 F -0.214 7.214 28 O -0.221 6.221 29 H 0.099 0.901 30 H 0.093 0.907 31 H 0.107 0.893 32 H 0.145 0.855 33 H 0.130 0.870 34 H 0.407 0.593 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.034 0.966 39 H 0.257 0.743 40 H 0.033 0.967 41 H 0.101 0.899 42 H 0.076 0.924 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.168 -0.365 -5.281 19.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.049 4.049 3 N -0.135 5.135 4 N -0.118 5.118 5 C -0.026 4.026 6 C -0.089 4.089 7 C 0.302 3.698 8 O -0.407 6.407 9 N -0.368 5.368 10 C 0.001 3.999 11 C -0.177 4.177 12 H 0.121 0.879 13 C 0.025 3.975 14 N -0.312 5.312 15 C -0.391 4.391 16 H 0.088 0.912 17 C -0.193 4.193 18 N -0.541 5.541 19 Si 0.735 3.265 20 H -0.201 1.201 21 H -0.216 1.216 22 H -0.214 1.214 23 C 0.044 3.956 24 C -0.218 4.218 25 C 0.263 3.737 26 F -0.180 7.180 27 F -0.195 7.195 28 O -0.101 6.101 29 H 0.117 0.883 30 H 0.112 0.888 31 H 0.125 0.875 32 H 0.163 0.837 33 H 0.148 0.852 34 H 0.243 0.757 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.051 0.949 39 H 0.067 0.933 40 H 0.051 0.949 41 H 0.119 0.881 42 H 0.095 0.905 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -19.081 1.196 -4.550 19.652 hybrid contribution 0.434 -1.797 -0.739 1.991 sum -18.646 -0.600 -5.289 19.391 Atomic orbital electron populations 1.20355 0.80153 1.05837 1.05153 1.27991 0.97824 0.79591 0.99460 1.74390 0.96002 1.25607 1.17547 1.74377 1.12263 1.08912 1.16273 1.26841 0.84649 0.91287 0.99840 1.20118 0.90276 1.00840 0.97619 1.19968 0.81066 0.78712 0.90040 1.90782 1.53340 1.50698 1.45924 1.45807 1.27827 1.53447 1.09686 1.21380 0.95772 1.00445 0.82285 1.22984 0.97442 1.02059 0.95197 0.87882 1.20929 0.85368 0.92575 0.98659 1.44098 1.23155 1.58606 1.05332 1.19174 0.88396 1.44039 0.87537 0.91235 1.25107 0.96546 1.00164 0.97463 1.70022 1.09493 1.47484 1.27103 0.86195 0.79990 0.78994 0.81361 1.20150 1.21572 1.21422 1.20843 0.93238 0.96436 0.85112 1.23273 0.95576 0.99791 1.03208 1.21027 0.85853 0.79863 0.86915 1.92974 1.94572 1.51430 1.78989 1.92959 1.59789 1.79608 1.87110 1.84741 1.17403 1.38349 1.69568 0.88305 0.88839 0.87478 0.83698 0.85186 0.75719 0.90380 0.90840 0.91527 0.94857 0.93320 0.94915 0.88126 0.90510 0.89553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.29 10.51 36.01 0.38 0.09 16 2 C 0.16 1.76 8.48 -12.94 -0.11 1.65 16 3 N -0.29 -4.04 12.22 32.55 0.40 -3.64 16 4 N -0.27 -4.04 12.22 32.55 0.40 -3.64 16 5 C 0.19 2.29 6.97 -12.94 -0.09 2.20 16 6 C -0.05 -0.41 6.33 -29.03 -0.18 -0.59 16 7 C 0.52 6.41 7.82 -10.99 -0.09 6.33 16 8 O -0.53 -9.13 16.03 5.56 0.09 -9.04 16 9 N -0.72 -8.05 5.33 -60.30 -0.32 -8.37 16 10 C 0.13 1.76 4.83 -4.04 -0.02 1.74 16 11 C -0.16 -2.36 2.03 -90.50 -0.18 -2.55 16 12 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 13 C 0.15 2.75 5.40 -3.71 -0.02 2.73 16 14 N -0.59 -13.15 2.99 -172.32 -0.52 -13.67 16 15 C -0.26 -6.43 9.58 -15.06 -0.14 -6.57 16 16 H 0.07 1.63 7.89 -52.49 -0.41 1.22 16 17 C 0.01 0.17 4.92 -17.43 -0.09 0.09 16 18 N -0.90 -24.32 11.20 55.49 0.62 -23.70 16 19 Si 0.91 20.03 29.59 -169.99 -5.03 15.00 16 20 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 21 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 23 C 0.17 3.70 5.10 -3.71 -0.02 3.68 16 24 C -0.18 -3.14 5.62 -26.61 -0.15 -3.29 16 25 C 0.30 5.10 1.63 -26.69 -0.04 5.06 16 26 F -0.20 -3.72 15.73 2.25 0.04 -3.69 16 27 F -0.21 -3.56 16.40 2.25 0.04 -3.52 16 28 O -0.22 -2.61 10.87 5.39 0.06 -2.55 16 29 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.11 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.15 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.13 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.41 3.50 7.70 -40.82 -0.31 3.19 16 35 H 0.08 1.23 7.97 -51.93 -0.41 0.82 16 36 H 0.07 1.07 7.63 -51.93 -0.40 0.68 16 37 H 0.07 1.08 7.14 -51.93 -0.37 0.71 16 38 H 0.03 0.66 7.92 -51.93 -0.41 0.25 16 39 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 40 H 0.03 0.77 7.92 -51.93 -0.41 0.36 16 41 H 0.10 2.44 6.06 -51.93 -0.31 2.12 16 42 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 43 H 0.09 1.45 8.14 -51.93 -0.42 1.02 16 LS Contribution 366.81 15.07 5.53 5.53 Total: -1.00 -34.31 366.81 -5.02 -39.33 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -5.56 Total: 1.41 kcal Atomic # 6 Polarization: 11.31 SS G_CDS: -0.76 Total: 10.55 kcal Atomic # 7 Polarization: -53.60 SS G_CDS: 0.58 Total: -53.02 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: 0.15 Total: -11.59 kcal Atomic # 9 Polarization: -7.28 SS G_CDS: 0.07 Total: -7.21 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.03 Total: 15.00 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.31 -5.02 -39.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716911073.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.506 kcal (2) G-P(sol) polarization free energy of solvation -34.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds