Wall clock time and date at job start Wed Apr 1 2020 02:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.52997 * 109.46817 * 240.00194 * 2 1 3 5 5 C 1.52994 * 109.47404 * 294.99916 * 4 2 1 6 6 H 1.09004 * 109.47057 * 55.00109 * 5 4 2 7 7 C 1.53000 * 109.47356 * 174.99986 * 5 4 2 8 8 N 1.46504 * 109.47261 * 175.00257 * 7 5 4 9 9 C 1.36939 * 120.00041 * 180.02562 * 8 7 5 10 10 H 1.07999 * 119.99670 * 359.97438 * 9 8 7 11 11 C 1.38804 * 119.99997 * 180.02562 * 9 8 7 12 12 N 1.31617 * 120.00361 * 180.02562 * 11 9 8 13 13 Si 1.86807 * 120.00247 * 359.97438 * 11 9 8 14 14 H 1.48500 * 109.46891 * 90.00101 * 13 11 9 15 15 H 1.48497 * 109.47358 * 210.00372 * 13 11 9 16 16 H 1.48498 * 109.47012 * 330.00534 * 13 11 9 17 17 N 1.46498 * 109.47321 * 295.00158 * 5 4 2 18 18 C 1.34772 * 120.00078 * 84.99937 * 17 5 4 19 19 O 1.21571 * 119.99957 * 359.97438 * 18 17 5 20 20 C 1.47728 * 120.00081 * 180.02562 * 18 17 5 21 21 C 1.39627 * 120.10256 * 359.72223 * 20 18 17 22 22 C 1.38075 * 119.89992 * 179.79254 * 21 20 18 23 23 F 1.35094 * 119.95115 * 180.23012 * 22 21 20 24 24 C 1.38791 * 120.10042 * 0.46041 * 22 21 20 25 25 F 1.35100 * 119.89953 * 179.76960 * 24 22 21 26 26 C 1.38784 * 120.19919 * 359.79135 * 24 22 21 27 27 F 1.35099 * 119.94727 * 179.97438 * 26 24 22 28 28 C 1.38074 * 120.10266 * 359.97438 * 26 24 22 29 29 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 30 30 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 32 32 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 33 33 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 34 34 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 35 35 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 36 36 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 37 37 H 1.09008 * 109.47017 * 174.99994 * 4 2 1 38 38 H 1.09005 * 109.47250 * 295.00070 * 7 5 4 39 39 H 1.09002 * 109.47443 * 55.00279 * 7 5 4 40 40 H 0.96993 * 119.99618 * 0.02562 * 8 7 5 41 41 H 0.96999 * 120.00488 * 179.97438 * 12 11 9 42 42 H 0.96995 * 119.99888 * 264.99605 * 17 5 4 43 43 H 1.08005 * 120.05122 * 0.02562 * 21 20 18 44 44 H 1.08005 * 120.04637 * 180.02562 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6352 -2.1954 -1.1881 6 1 0.5562 -2.2706 -1.0528 7 6 2.0353 -2.8887 -2.4920 8 7 1.7568 -4.3232 -2.3877 9 6 2.0357 -5.1532 -3.4407 10 1 2.4606 -4.7501 -4.3480 11 6 1.7713 -6.5122 -3.3421 12 7 2.0399 -7.3100 -4.3538 13 14 1.0357 -7.2093 -1.7728 14 1 -0.4461 -7.1806 -1.8655 15 1 1.4933 -8.6103 -1.5913 16 1 1.4751 -6.3910 -0.6141 17 7 2.3147 -2.8421 -0.0628 18 6 1.7815 -2.7780 1.1733 19 8 0.7368 -2.1831 1.3546 20 6 2.4669 -3.4296 2.3081 21 6 3.6643 -4.1174 2.1016 22 6 4.3037 -4.7213 3.1660 23 9 5.4647 -5.3831 2.9681 24 6 3.7530 -4.6535 4.4381 25 9 4.3796 -5.2498 5.4759 26 6 2.5603 -3.9754 4.6473 27 9 2.0285 -3.9131 5.8877 28 6 1.9164 -3.3644 3.5897 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.6768 1.9562 0.8901 34 1 3.1301 1.4425 0.0005 35 1 1.6768 1.9563 -0.8899 36 1 1.6053 -0.2617 -2.1370 37 1 3.1263 -0.6443 -1.2952 38 1 1.4631 -2.4666 -3.3183 39 1 3.0996 -2.7374 -2.6723 40 1 1.3748 -4.6851 -1.5729 41 1 1.8555 -8.2598 -4.2848 42 1 3.1483 -3.3164 -0.2074 43 1 4.0918 -4.1738 1.1113 44 1 0.9884 -2.8366 3.7536 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732468970.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:28:23 Heat of formation + Delta-G solvation = -135.196854 kcal Electronic energy + Delta-G solvation = -30875.927208 eV Core-core repulsion = 26186.265407 eV Total energy + Delta-G solvation = -4689.661801 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.13916 -49.53010 -48.81720 -40.69877 -38.72178 -36.84878 -35.22924 -33.81908 -31.89773 -31.06573 -30.92145 -29.38675 -27.03993 -25.90270 -24.80553 -23.76562 -22.59476 -21.43976 -20.63804 -19.88876 -19.03135 -18.32159 -18.08451 -17.70665 -17.15831 -16.81625 -16.40804 -15.99916 -15.81656 -15.77141 -15.27839 -15.24691 -14.76135 -14.70935 -14.46630 -14.36134 -13.95973 -13.51322 -13.37781 -13.20365 -12.99249 -12.85770 -12.43146 -12.26597 -12.20656 -12.13632 -12.05748 -11.77285 -11.37803 -11.24359 -10.95061 -10.69248 -10.45982 -10.32818 -10.19423 -10.01299 -9.69791 -9.44719 -9.37788 -9.05010 -8.94986 -7.36896 -5.86665 -3.23856 -0.08961 0.30146 2.18104 2.77094 3.01344 3.18218 3.27090 3.32836 3.39002 3.68753 3.73693 3.92964 4.16649 4.42381 4.49403 4.69268 4.93304 4.96993 5.00635 5.01560 5.21163 5.29576 5.34731 5.39092 5.42607 5.49759 5.51730 5.69737 5.75108 5.83548 5.86290 5.93202 5.99050 6.07451 6.11477 6.21939 6.29519 6.44147 6.50052 6.63119 6.64943 7.42421 7.87769 8.06431 8.31631 9.09726 9.81688 10.00126 11.31334 Molecular weight = 344.15amu Principal moments of inertia in cm(-1) A = 0.007423 B = 0.004687 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3770.924784 B = 5972.147492 C = 8587.968705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.094 4.094 3 C -0.146 4.146 4 C -0.123 4.123 5 C 0.131 3.869 6 H 0.096 0.904 7 C 0.148 3.852 8 N -0.755 5.755 9 C -0.249 4.249 10 H 0.092 0.908 11 C 0.009 3.991 12 N -0.930 5.930 13 Si 0.881 3.119 14 H -0.284 1.284 15 H -0.290 1.290 16 H -0.279 1.279 17 N -0.703 5.703 18 C 0.557 3.443 19 O -0.517 6.517 20 C -0.081 4.081 21 C -0.102 4.102 22 C 0.097 3.903 23 F -0.113 7.113 24 C 0.053 3.947 25 F -0.113 7.113 26 C 0.092 3.908 27 F -0.115 7.115 28 C -0.078 4.078 29 H 0.040 0.960 30 H 0.074 0.926 31 H 0.044 0.956 32 H 0.073 0.927 33 H 0.049 0.951 34 H 0.048 0.952 35 H 0.051 0.949 36 H 0.075 0.925 37 H 0.065 0.935 38 H 0.045 0.955 39 H 0.034 0.966 40 H 0.362 0.638 41 H 0.261 0.739 42 H 0.404 0.596 43 H 0.161 0.839 44 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.943 13.113 16.321 21.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.112 4.112 3 C -0.204 4.204 4 C -0.162 4.162 5 C 0.027 3.973 6 H 0.114 0.886 7 C 0.020 3.980 8 N -0.401 5.401 9 C -0.379 4.379 10 H 0.109 0.891 11 C -0.187 4.187 12 N -0.578 5.578 13 Si 0.712 3.288 14 H -0.210 1.210 15 H -0.216 1.216 16 H -0.205 1.205 17 N -0.354 5.354 18 C 0.342 3.658 19 O -0.395 6.395 20 C -0.084 4.084 21 C -0.122 4.122 22 C 0.077 3.923 23 F -0.091 7.091 24 C 0.031 3.969 25 F -0.091 7.091 26 C 0.072 3.928 27 F -0.094 7.094 28 C -0.098 4.098 29 H 0.060 0.940 30 H 0.093 0.907 31 H 0.063 0.937 32 H 0.091 0.909 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.063 0.937 39 H 0.052 0.948 40 H 0.195 0.805 41 H 0.071 0.929 42 H 0.240 0.760 43 H 0.179 0.821 44 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 2.321 13.411 16.251 21.197 hybrid contribution 0.243 -1.268 1.390 1.897 sum 2.564 12.143 17.641 21.570 Atomic orbital electron populations 1.21844 0.94856 1.02980 0.99967 1.21155 0.96632 0.95057 0.98378 1.21863 1.00412 0.96812 1.01304 1.22025 1.01206 0.94196 0.98725 1.21566 0.98578 0.91598 0.85537 0.88624 1.20970 0.98733 0.85145 0.93133 1.42693 1.77926 1.02702 1.16817 1.19025 1.35776 0.88789 0.94302 0.89070 1.24655 1.00999 0.96007 0.97033 1.69688 1.53478 1.04168 1.30416 0.86617 0.79583 0.78584 0.84044 1.21007 1.21624 1.20493 1.45991 1.27292 1.54981 1.07152 1.17764 0.85032 0.80304 0.82653 1.90816 1.22232 1.42282 1.84177 1.19772 0.94804 0.99480 0.94379 1.21440 0.94912 0.96402 0.99444 1.17128 0.85290 0.98167 0.91747 1.91611 1.44260 1.77880 1.95366 1.17806 0.93611 1.00869 0.84616 1.91581 1.81090 1.81029 1.55440 1.17136 0.92447 1.01539 0.81706 1.91591 1.85165 1.94571 1.38042 1.21230 1.01069 0.97918 0.89570 0.94048 0.90683 0.93720 0.90872 0.93184 0.93247 0.92971 0.90634 0.91620 0.93729 0.94837 0.80484 0.92927 0.75969 0.82104 0.81393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 8.03 37.16 0.30 -1.36 16 2 C -0.09 -1.05 2.38 -90.62 -0.22 -1.26 16 3 C -0.15 -1.42 9.19 37.16 0.34 -1.07 16 4 C -0.12 -1.36 4.36 -26.74 -0.12 -1.48 16 5 C 0.13 1.76 2.33 -67.93 -0.16 1.60 16 6 H 0.10 1.43 5.92 -51.93 -0.31 1.12 16 7 C 0.15 2.45 5.82 -4.04 -0.02 2.42 16 8 N -0.76 -16.22 5.24 -59.90 -0.31 -16.54 16 9 C -0.25 -6.62 10.47 -15.06 -0.16 -6.78 16 10 H 0.09 2.60 8.06 -52.49 -0.42 2.18 16 11 C 0.01 0.26 5.50 -17.43 -0.10 0.17 16 12 N -0.93 -28.28 13.97 55.49 0.78 -27.51 16 13 Si 0.88 21.39 27.74 -169.99 -4.71 16.67 16 14 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 15 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 16 H -0.28 -6.22 6.52 56.52 0.37 -5.85 16 17 N -0.70 -8.77 4.42 -54.79 -0.24 -9.01 16 18 C 0.56 6.97 6.32 -12.38 -0.08 6.89 16 19 O -0.52 -7.32 11.29 5.30 0.06 -7.26 16 20 C -0.08 -0.87 5.87 -104.98 -0.62 -1.49 16 21 C -0.10 -1.03 9.51 -39.12 -0.37 -1.40 16 22 C 0.10 1.05 7.29 -39.44 -0.29 0.76 16 23 F -0.11 -1.32 17.17 2.25 0.04 -1.28 16 24 C 0.05 0.58 7.32 -39.17 -0.29 0.29 16 25 F -0.11 -1.34 17.08 2.25 0.04 -1.30 16 26 C 0.09 0.95 7.29 -39.44 -0.29 0.67 16 27 F -0.12 -1.24 17.17 2.25 0.04 -1.20 16 28 C -0.08 -0.78 9.57 -39.12 -0.37 -1.16 16 29 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.07 1.03 4.75 -51.93 -0.25 0.78 16 31 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.90 5.19 -51.93 -0.27 0.63 16 33 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 38 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.36 7.75 5.20 -40.82 -0.21 7.53 16 41 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 42 H 0.40 4.65 6.63 -40.82 -0.27 4.38 16 43 H 0.16 1.41 6.40 -52.48 -0.34 1.07 16 44 H 0.17 1.55 7.65 -52.48 -0.40 1.15 16 LS Contribution 367.47 15.07 5.54 5.54 Total: -1.00 -30.20 367.47 -6.65 -36.85 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -5.44 Total: 8.24 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: -2.43 Total: -3.21 kcal Atomic # 7 Polarization: -53.27 SS G_CDS: 0.22 Total: -53.05 kcal Atomic # 8 Polarization: -7.32 SS G_CDS: 0.06 Total: -7.26 kcal Atomic # 9 Polarization: -3.90 SS G_CDS: 0.12 Total: -3.78 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.71 Total: 16.67 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.20 -6.65 -36.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732468970.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.344 kcal (2) G-P(sol) polarization free energy of solvation -30.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds