Wall clock time and date at job start Wed Apr 1 2020 02:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.52997 * 109.46817 * 240.00194 * 2 1 3 5 5 C 1.52994 * 109.47404 * 294.99916 * 4 2 1 6 6 H 1.09004 * 109.47057 * 55.00109 * 5 4 2 7 7 C 1.53000 * 109.47356 * 174.99986 * 5 4 2 8 8 N 1.46504 * 109.47261 * 175.00257 * 7 5 4 9 9 C 1.36939 * 120.00041 * 180.02562 * 8 7 5 10 10 H 1.07999 * 119.99670 * 359.97438 * 9 8 7 11 11 C 1.38804 * 119.99997 * 180.02562 * 9 8 7 12 12 N 1.31617 * 120.00361 * 180.02562 * 11 9 8 13 13 Si 1.86807 * 120.00247 * 359.97438 * 11 9 8 14 14 H 1.48500 * 109.46891 * 90.00101 * 13 11 9 15 15 H 1.48497 * 109.47358 * 210.00372 * 13 11 9 16 16 H 1.48498 * 109.47012 * 330.00534 * 13 11 9 17 17 N 1.46498 * 109.47321 * 295.00158 * 5 4 2 18 18 C 1.34772 * 120.00078 * 84.99937 * 17 5 4 19 19 O 1.21571 * 119.99957 * 359.97438 * 18 17 5 20 20 C 1.47728 * 120.00081 * 180.02562 * 18 17 5 21 21 C 1.39627 * 120.10256 * 359.72223 * 20 18 17 22 22 C 1.38075 * 119.89992 * 179.79254 * 21 20 18 23 23 F 1.35094 * 119.95115 * 180.23012 * 22 21 20 24 24 C 1.38791 * 120.10042 * 0.46041 * 22 21 20 25 25 F 1.35100 * 119.89953 * 179.76960 * 24 22 21 26 26 C 1.38784 * 120.19919 * 359.79135 * 24 22 21 27 27 F 1.35099 * 119.94727 * 179.97438 * 26 24 22 28 28 C 1.38074 * 120.10266 * 359.97438 * 26 24 22 29 29 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 30 30 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 32 32 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 33 33 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 34 34 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 35 35 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 36 36 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 37 37 H 1.09008 * 109.47017 * 174.99994 * 4 2 1 38 38 H 1.09005 * 109.47250 * 295.00070 * 7 5 4 39 39 H 1.09002 * 109.47443 * 55.00279 * 7 5 4 40 40 H 0.96993 * 119.99618 * 0.02562 * 8 7 5 41 41 H 0.96999 * 120.00488 * 179.97438 * 12 11 9 42 42 H 0.96995 * 119.99888 * 264.99605 * 17 5 4 43 43 H 1.08005 * 120.05122 * 0.02562 * 21 20 18 44 44 H 1.08005 * 120.04637 * 180.02562 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6352 -2.1954 -1.1881 6 1 0.5562 -2.2706 -1.0528 7 6 2.0353 -2.8887 -2.4920 8 7 1.7568 -4.3232 -2.3877 9 6 2.0357 -5.1532 -3.4407 10 1 2.4606 -4.7501 -4.3480 11 6 1.7713 -6.5122 -3.3421 12 7 2.0399 -7.3100 -4.3538 13 14 1.0357 -7.2093 -1.7728 14 1 -0.4461 -7.1806 -1.8655 15 1 1.4933 -8.6103 -1.5913 16 1 1.4751 -6.3910 -0.6141 17 7 2.3147 -2.8421 -0.0628 18 6 1.7815 -2.7780 1.1733 19 8 0.7368 -2.1831 1.3546 20 6 2.4669 -3.4296 2.3081 21 6 3.6643 -4.1174 2.1016 22 6 4.3037 -4.7213 3.1660 23 9 5.4647 -5.3831 2.9681 24 6 3.7530 -4.6535 4.4381 25 9 4.3796 -5.2498 5.4759 26 6 2.5603 -3.9754 4.6473 27 9 2.0285 -3.9131 5.8877 28 6 1.9164 -3.3644 3.5897 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.6768 1.9562 0.8901 34 1 3.1301 1.4425 0.0005 35 1 1.6768 1.9563 -0.8899 36 1 1.6053 -0.2617 -2.1370 37 1 3.1263 -0.6443 -1.2952 38 1 1.4631 -2.4666 -3.3183 39 1 3.0996 -2.7374 -2.6723 40 1 1.3748 -4.6851 -1.5729 41 1 1.8555 -8.2598 -4.2848 42 1 3.1483 -3.3164 -0.2074 43 1 4.0918 -4.1738 1.1113 44 1 0.9884 -2.8366 3.7536 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732468970.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:28:22 Heat of formation + Delta-G solvation = -152.448988 kcal Electronic energy + Delta-G solvation = -30876.675317 eV Core-core repulsion = 26186.265407 eV Total energy + Delta-G solvation = -4690.409910 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -51.00700 -50.37936 -49.68761 -41.66403 -39.62834 -37.94443 -36.51662 -35.17885 -33.47021 -32.23204 -31.84479 -30.54820 -27.90141 -27.29437 -25.74426 -24.60429 -24.19563 -22.64683 -21.68072 -20.80855 -20.09534 -19.56406 -19.17391 -18.85773 -18.01584 -17.76667 -17.38901 -17.01641 -16.77993 -16.66689 -16.42344 -16.15549 -16.10083 -15.84551 -15.62404 -15.42405 -14.97898 -14.80362 -14.66964 -14.40542 -14.04195 -13.87300 -13.84123 -13.42740 -13.16021 -13.00481 -12.98512 -12.92349 -12.88304 -12.49721 -12.39687 -12.04106 -11.82961 -11.66366 -11.34959 -11.22677 -11.06429 -10.96582 -10.26924 -10.24269 -9.97865 -9.29511 -8.01667 -5.34724 -0.94141 -0.50239 1.29786 1.34826 1.39563 1.46019 1.86258 2.12657 2.27924 2.47280 2.85177 2.89191 3.11956 3.25176 3.31995 3.52274 3.63410 3.89331 4.09893 4.12468 4.15508 4.17139 4.35499 4.41659 4.43544 4.49747 4.67255 4.70345 4.85537 4.90528 4.94512 4.97054 5.05035 5.14646 5.21320 5.24860 5.25543 5.43671 5.54802 5.62100 5.69516 5.79017 6.21760 6.45317 7.08774 7.10107 7.84442 8.02185 9.19659 Molecular weight = 344.15amu Principal moments of inertia in cm(-1) A = 0.007423 B = 0.004687 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3770.924784 B = 5972.147492 C = 8587.968705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.091 4.091 3 C -0.143 4.143 4 C -0.116 4.116 5 C 0.143 3.857 6 H 0.082 0.918 7 C 0.146 3.854 8 N -0.756 5.756 9 C -0.228 4.228 10 H 0.063 0.937 11 C -0.057 4.057 12 N -0.982 5.982 13 Si 0.942 3.058 14 H -0.288 1.288 15 H -0.299 1.299 16 H -0.246 1.246 17 N -0.703 5.703 18 C 0.559 3.441 19 O -0.534 6.534 20 C -0.084 4.084 21 C -0.092 4.092 22 C 0.093 3.907 23 F -0.119 7.119 24 C 0.050 3.950 25 F -0.120 7.120 26 C 0.094 3.906 27 F -0.118 7.118 28 C -0.067 4.067 29 H 0.047 0.953 30 H 0.055 0.945 31 H 0.042 0.958 32 H 0.064 0.936 33 H 0.051 0.949 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.044 0.956 39 H 0.045 0.955 40 H 0.365 0.635 41 H 0.256 0.744 42 H 0.410 0.590 43 H 0.176 0.824 44 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.047 14.600 17.828 23.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.109 4.109 3 C -0.200 4.200 4 C -0.155 4.155 5 C 0.039 3.961 6 H 0.100 0.900 7 C 0.020 3.980 8 N -0.402 5.402 9 C -0.359 4.359 10 H 0.081 0.919 11 C -0.249 4.249 12 N -0.633 5.633 13 Si 0.770 3.230 14 H -0.215 1.215 15 H -0.226 1.226 16 H -0.170 1.170 17 N -0.355 5.355 18 C 0.345 3.655 19 O -0.413 6.413 20 C -0.088 4.088 21 C -0.111 4.111 22 C 0.072 3.928 23 F -0.098 7.098 24 C 0.029 3.971 25 F -0.098 7.098 26 C 0.073 3.927 27 F -0.096 7.096 28 C -0.087 4.087 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.061 0.939 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.198 0.802 41 H 0.065 0.935 42 H 0.247 0.753 43 H 0.193 0.807 44 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 2.438 14.957 17.793 23.373 hybrid contribution 0.219 -1.625 0.873 1.857 sum 2.657 13.333 18.667 23.093 Atomic orbital electron populations 1.21795 0.95542 1.01760 1.00214 1.21103 0.95973 0.96008 0.97825 1.21818 1.00884 0.95605 1.01706 1.21980 1.02044 0.92323 0.99121 1.21336 0.97862 0.92704 0.84188 0.89981 1.21139 0.99299 0.82528 0.95079 1.42671 1.77717 1.04281 1.15502 1.19023 1.33199 0.89242 0.94399 0.91920 1.25373 1.02682 0.96620 1.00231 1.69859 1.56155 1.04256 1.32983 0.85606 0.78229 0.77678 0.81445 1.21453 1.22555 1.17034 1.45951 1.27448 1.55130 1.06982 1.17901 0.84770 0.79979 0.82820 1.90823 1.23012 1.43017 1.84422 1.19605 0.95130 1.00057 0.93996 1.21529 0.94349 0.95385 0.99861 1.17142 0.85261 0.98556 0.91830 1.91597 1.44659 1.78106 1.95395 1.17932 0.93781 1.00874 0.84561 1.91563 1.81271 1.81203 1.55803 1.17075 0.92283 1.01622 0.81685 1.91588 1.85182 1.94603 1.38244 1.21280 1.01054 0.97187 0.89131 0.93379 0.92574 0.93891 0.91789 0.93011 0.92468 0.92396 0.89911 0.90339 0.93818 0.93658 0.80168 0.93458 0.75302 0.80709 0.80565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 8.03 71.98 0.58 -2.43 16 2 C -0.09 -1.80 2.38 -10.79 -0.03 -1.83 16 3 C -0.14 -2.36 9.19 71.98 0.66 -1.70 16 4 C -0.12 -2.26 4.36 30.59 0.13 -2.13 16 5 C 0.14 3.53 2.33 44.99 0.10 3.63 16 6 H 0.08 2.31 5.92 -2.39 -0.01 2.30 16 7 C 0.15 4.54 5.82 86.38 0.50 5.04 16 8 N -0.76 -31.19 5.24 -343.44 -1.80 -32.99 16 9 C -0.23 -12.03 10.47 84.03 0.88 -11.15 16 10 H 0.06 3.63 8.06 -2.91 -0.02 3.61 16 11 C -0.06 -3.22 5.50 84.86 0.47 -2.75 16 12 N -0.98 -60.91 13.97 21.65 0.30 -60.60 16 13 Si 0.94 43.67 27.74 68.60 1.90 45.57 16 14 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 15 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 16 H -0.25 -9.91 6.52 99.48 0.65 -9.26 16 17 N -0.70 -15.75 4.42 -445.53 -1.97 -17.72 16 18 C 0.56 12.67 6.32 86.75 0.55 13.22 16 19 O -0.53 -14.08 11.29 -3.94 -0.04 -14.13 16 20 C -0.08 -1.61 5.87 -20.10 -0.12 -1.73 16 21 C -0.09 -1.62 9.51 22.57 0.21 -1.41 16 22 C 0.09 1.82 7.29 22.36 0.16 1.98 16 23 F -0.12 -2.60 17.17 44.97 0.77 -1.82 16 24 C 0.05 1.01 7.32 22.53 0.16 1.18 16 25 F -0.12 -2.70 17.08 44.97 0.77 -1.93 16 26 C 0.09 1.77 7.29 22.36 0.16 1.93 16 27 F -0.12 -2.35 17.17 44.97 0.77 -1.58 16 28 C -0.07 -1.19 9.57 22.57 0.22 -0.98 16 29 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.06 1.47 4.75 -2.39 -0.01 1.46 16 31 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.06 1.42 5.19 -2.39 -0.01 1.40 16 33 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.08 1.36 8.14 -2.38 -0.02 1.35 16 38 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 39 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.37 14.70 5.20 -92.71 -0.48 14.22 16 41 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 42 H 0.41 8.24 6.63 -92.71 -0.61 7.63 16 43 H 0.18 2.54 6.40 -2.91 -0.02 2.52 16 44 H 0.18 2.86 7.65 -2.91 -0.02 2.84 16 Total: -1.00 -64.64 367.47 5.28 -59.36 By element: Atomic # 1 Polarization: 25.04 SS G_CDS: -0.08 Total: 24.95 kcal Atomic # 6 Polarization: -3.77 SS G_CDS: 4.65 Total: 0.88 kcal Atomic # 7 Polarization: -107.85 SS G_CDS: -3.47 Total: -111.32 kcal Atomic # 8 Polarization: -14.08 SS G_CDS: -0.04 Total: -14.13 kcal Atomic # 9 Polarization: -7.64 SS G_CDS: 2.31 Total: -5.33 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 1.90 Total: 45.57 kcal Total: -64.64 5.28 -59.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732468970.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.088 kcal (2) G-P(sol) polarization free energy of solvation -64.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds