Wall clock time and date at job start Wed Apr 1 2020 02:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 C 1.52999 * 109.47010 * 120.00125 * 2 1 3 5 5 H 1.08995 * 109.47098 * 299.99700 * 4 2 1 6 6 C 1.53004 * 109.47083 * 59.99777 * 4 2 1 7 7 N 1.46502 * 109.46925 * 175.00128 * 6 4 2 8 8 C 1.34775 * 119.99947 * 180.02562 * 7 6 4 9 9 O 1.21619 * 120.00010 * 359.97438 * 8 7 6 10 10 C 1.47265 * 120.00187 * 179.97438 * 8 7 6 11 11 C 1.38420 * 120.59338 * 359.71747 * 10 8 7 12 12 C 1.41793 * 118.70798 * 179.80847 * 11 10 8 13 13 C 1.40307 * 120.20459 * 180.24334 * 12 11 10 14 14 C 1.36491 * 119.88025 * 180.27193 * 13 12 11 15 15 C 1.38816 * 120.46681 * 359.95629 * 14 13 12 16 16 C 1.37860 * 120.63746 * 0.02562 * 15 14 13 17 17 C 1.39080 * 119.99016 * 0.02562 * 16 15 14 18 18 O 1.35013 * 119.87255 * 179.97438 * 17 16 15 19 19 C 1.34348 * 121.42910 * 179.97438 * 18 17 16 20 20 O 1.21679 * 119.92183 * 180.02562 * 19 18 17 21 21 N 1.46498 * 109.47257 * 179.97438 * 4 2 1 22 22 C 1.36943 * 119.99752 * 84.72207 * 21 4 2 23 23 H 1.08002 * 119.99793 * 0.27665 * 22 21 4 24 24 C 1.38811 * 120.00012 * 180.27737 * 22 21 4 25 25 N 1.31624 * 119.99698 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 120.00072 * 180.02562 * 24 22 21 27 27 H 1.48495 * 109.47159 * 0.02562 * 26 24 22 28 28 H 1.48505 * 109.47290 * 120.00044 * 26 24 22 29 29 H 1.48503 * 109.47163 * 240.00049 * 26 24 22 30 30 H 1.09003 * 109.47062 * 300.00363 * 1 2 3 31 31 H 1.08996 * 109.47077 * 59.99864 * 1 2 3 32 32 H 1.08996 * 109.47248 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.46945 * 239.99919 * 2 1 3 34 34 H 1.09003 * 109.47146 * 179.97438 * 3 2 1 35 35 H 1.08996 * 109.47253 * 300.00028 * 3 2 1 36 36 H 1.08995 * 109.47275 * 60.00121 * 3 2 1 37 37 H 1.08997 * 109.47038 * 294.99798 * 6 4 2 38 38 H 1.08999 * 109.47047 * 55.00424 * 6 4 2 39 39 H 0.96997 * 120.00059 * 359.97438 * 7 6 4 40 40 H 1.07997 * 120.64586 * 0.02562 * 11 10 8 41 41 H 1.08010 * 120.06290 * 0.25215 * 13 12 11 42 42 H 1.07998 * 119.76558 * 179.97438 * 14 13 12 43 43 H 1.08003 * 119.68414 * 180.02562 * 15 14 13 44 44 H 1.07998 * 120.00599 * 180.02562 * 16 15 14 45 45 H 0.97001 * 120.00384 * 265.00562 * 21 4 2 46 46 H 0.96999 * 119.99739 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2075 2.1392 6 6 1.5299 -2.1638 1.2492 7 7 2.1140 -2.8883 2.3807 8 6 1.8059 -4.1848 2.5821 9 8 1.0426 -4.7531 1.8249 10 6 2.3935 -4.9132 3.7191 11 6 3.2682 -4.2801 4.5852 12 6 3.8072 -5.0184 5.6691 13 6 4.6927 -4.4063 6.5690 14 6 5.2119 -5.1248 7.6069 15 6 4.8696 -6.4589 7.7804 16 6 4.0011 -7.0803 6.9085 17 6 3.4594 -6.3701 5.8425 18 8 2.6095 -6.9812 4.9898 19 6 2.0677 -6.3250 3.9502 20 8 1.3045 -6.9027 3.1990 21 7 3.5050 -0.7218 1.2490 22 6 4.1901 0.3552 1.7447 23 1 3.6505 1.2032 2.1400 24 6 5.5782 0.3572 1.7392 25 7 6.2359 -0.6760 1.2570 26 14 6.5129 1.8261 2.4161 27 1 5.5484 2.8484 2.8953 28 1 7.3718 1.3886 3.5458 29 1 7.3616 2.4088 1.3458 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8899 36 1 1.6767 1.9563 0.8899 37 1 0.4436 -2.1650 1.3388 38 1 1.8183 -2.6511 0.3179 39 1 2.7231 -2.4351 2.9844 40 1 3.5322 -3.2430 4.4402 41 1 4.9633 -3.3686 6.4406 42 1 5.8937 -4.6519 8.2983 43 1 5.2876 -7.0153 8.6062 44 1 3.7414 -8.1186 7.0533 45 1 3.9897 -1.4834 0.8939 46 1 7.2058 -0.6748 1.2535 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753842704.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:41:06 Heat of formation + Delta-G solvation = -56.284024 kcal Electronic energy + Delta-G solvation = -29938.378160 eV Core-core repulsion = 25793.995017 eV Total energy + Delta-G solvation = -4144.383144 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.98623 -39.52410 -38.93737 -37.43098 -36.99454 -34.95134 -33.74252 -33.18635 -31.22008 -30.60773 -30.16021 -28.02037 -26.16951 -25.33629 -24.41472 -23.80537 -23.12801 -22.01511 -20.89372 -19.66839 -19.38324 -18.37994 -17.61771 -17.21228 -16.86594 -16.34024 -15.97502 -15.44346 -15.30067 -15.01436 -14.99457 -14.61911 -14.09354 -14.00801 -13.66173 -13.61526 -13.51431 -13.34962 -13.28327 -12.82744 -12.39411 -12.21214 -12.14423 -12.06238 -11.72499 -11.65106 -11.12403 -11.03788 -10.89817 -10.85217 -10.68917 -10.47897 -10.33746 -10.13970 -10.00133 -9.63692 -9.57989 -9.16891 -9.00397 -8.75851 -8.51612 -7.11213 -5.90110 -3.19739 -0.28469 0.77239 1.31066 2.13497 2.36339 3.18537 3.30164 3.32280 3.39192 3.40979 3.63008 3.87347 4.05746 4.20921 4.44426 4.46008 4.74137 4.77780 4.91403 5.21858 5.25419 5.27805 5.30427 5.37325 5.48765 5.49771 5.60709 5.71633 5.73187 5.86655 5.87277 5.97515 5.98207 6.15461 6.21565 6.23077 6.35185 6.41305 6.50043 6.59410 6.63261 6.86368 6.99858 7.03665 7.25514 7.38154 7.59540 7.82525 8.26964 8.49131 9.39127 9.93913 10.30210 11.31448 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.009347 B = 0.003622 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2994.869493 B = 7727.961253 C =10226.456595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.109 4.109 3 C -0.139 4.139 4 C 0.170 3.830 5 H 0.054 0.946 6 C 0.115 3.885 7 N -0.708 5.708 8 C 0.563 3.437 9 O -0.520 6.520 10 C -0.248 4.248 11 C 0.039 3.961 12 C -0.161 4.161 13 C -0.041 4.041 14 C -0.148 4.148 15 C -0.055 4.055 16 C -0.143 4.143 17 C 0.158 3.842 18 O -0.267 6.267 19 C 0.520 3.480 20 O -0.419 6.419 21 N -0.723 5.723 22 C -0.237 4.237 23 H 0.074 0.926 24 C -0.010 4.010 25 N -0.928 5.928 26 Si 0.901 3.099 27 H -0.280 1.280 28 H -0.293 1.293 29 H -0.292 1.292 30 H 0.049 0.951 31 H 0.046 0.954 32 H 0.051 0.949 33 H 0.063 0.937 34 H 0.086 0.914 35 H 0.031 0.969 36 H 0.040 0.960 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.406 0.594 40 H 0.161 0.839 41 H 0.146 0.854 42 H 0.137 0.863 43 H 0.140 0.860 44 H 0.144 0.856 45 H 0.385 0.615 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.407 -6.805 13.566 15.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.131 4.131 3 C -0.196 4.196 4 C 0.059 3.941 5 H 0.072 0.928 6 C -0.009 4.009 7 N -0.360 5.360 8 C 0.349 3.651 9 O -0.397 6.397 10 C -0.253 4.253 11 C 0.019 3.981 12 C -0.162 4.162 13 C -0.059 4.059 14 C -0.166 4.166 15 C -0.073 4.073 16 C -0.161 4.161 17 C 0.113 3.887 18 O -0.179 6.179 19 C 0.364 3.636 20 O -0.301 6.301 21 N -0.364 5.364 22 C -0.368 4.368 23 H 0.092 0.908 24 C -0.207 4.207 25 N -0.576 5.576 26 Si 0.732 3.268 27 H -0.205 1.205 28 H -0.220 1.220 29 H -0.219 1.219 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.105 0.895 35 H 0.050 0.950 36 H 0.059 0.941 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.243 0.757 40 H 0.178 0.822 41 H 0.163 0.837 42 H 0.154 0.846 43 H 0.158 0.842 44 H 0.162 0.838 45 H 0.219 0.781 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.346 -7.527 12.715 15.401 hybrid contribution 1.226 1.018 0.370 1.636 sum -3.120 -6.509 13.085 14.943 Atomic orbital electron populations 1.21948 0.96801 1.01061 1.00960 1.21721 0.93604 0.97773 1.00005 1.21820 1.04176 0.94618 0.99032 1.20564 0.86359 0.91024 0.96130 0.92767 1.21790 0.97455 0.93063 0.88588 1.45818 1.48741 1.10215 1.31275 1.17302 0.81851 0.81986 0.83980 1.90853 1.35263 1.67456 1.46088 1.22466 1.06096 0.94989 1.01724 1.22559 0.87057 1.00258 0.88231 1.18146 1.04662 0.93310 1.00035 1.21232 0.92222 1.00598 0.91864 1.20962 1.01810 0.94589 0.99208 1.21278 0.94027 0.94697 0.97332 1.20647 1.00121 1.01313 0.94024 1.19272 0.89361 0.90540 0.89546 1.83703 1.52788 1.45305 1.36142 1.20029 0.79565 0.85795 0.78206 1.91038 1.30628 1.69141 1.39307 1.42511 0.98769 1.21094 1.74047 1.19254 0.88756 0.96338 1.32441 0.90810 1.24727 0.96465 0.97648 1.01824 1.69677 1.06899 1.29741 1.51294 0.86220 0.80070 0.82266 0.78235 1.20539 1.21975 1.21909 0.93186 0.93523 0.92956 0.91818 0.89507 0.94957 0.94069 0.91263 0.91579 0.75703 0.82177 0.83661 0.84554 0.84239 0.83817 0.78065 0.93504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 8.84 37.16 0.33 -1.74 16 2 C -0.11 -1.81 2.69 -90.62 -0.24 -2.05 16 3 C -0.14 -2.42 8.26 37.16 0.31 -2.11 16 4 C 0.17 2.97 2.18 -67.93 -0.15 2.83 16 5 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 6 C 0.12 1.93 4.73 -4.04 -0.02 1.91 16 7 N -0.71 -11.62 5.34 -61.43 -0.33 -11.95 16 8 C 0.56 10.16 7.77 -12.59 -0.10 10.06 16 9 O -0.52 -11.33 15.46 -15.56 -0.24 -11.57 16 10 C -0.25 -3.85 6.05 -102.74 -0.62 -4.47 16 11 C 0.04 0.47 9.36 -38.16 -0.36 0.11 16 12 C -0.16 -1.74 5.74 -106.85 -0.61 -2.35 16 13 C -0.04 -0.34 9.72 -39.43 -0.38 -0.73 16 14 C -0.15 -0.98 9.97 -40.00 -0.40 -1.38 16 15 C -0.06 -0.34 10.02 -39.51 -0.40 -0.74 16 16 C -0.14 -1.18 9.98 -39.41 -0.39 -1.57 16 17 C 0.16 1.80 6.75 -38.36 -0.26 1.54 16 18 O -0.27 -3.79 9.80 -21.05 -0.21 -4.00 16 19 C 0.52 8.79 8.13 34.16 0.28 9.07 16 20 O -0.42 -8.60 16.30 -26.44 -0.43 -9.03 16 21 N -0.72 -15.50 4.44 -53.43 -0.24 -15.74 16 22 C -0.24 -5.64 7.55 -15.06 -0.11 -5.75 16 23 H 0.07 1.73 7.38 -52.49 -0.39 1.34 16 24 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 25 N -0.93 -25.42 13.06 55.49 0.72 -24.70 16 26 Si 0.90 20.38 29.55 -169.99 -5.02 15.36 16 27 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 28 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 29 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.70 6.54 -51.93 -0.34 0.36 16 33 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.09 1.79 5.99 -51.93 -0.31 1.47 16 35 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 1.10 6.71 -51.93 -0.35 0.75 16 38 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 39 H 0.41 6.28 6.21 -40.82 -0.25 6.02 16 40 H 0.16 1.69 6.46 -52.49 -0.34 1.36 16 41 H 0.15 1.00 8.06 -52.48 -0.42 0.58 16 42 H 0.14 0.59 8.06 -52.49 -0.42 0.17 16 43 H 0.14 0.45 8.06 -52.48 -0.42 0.03 16 44 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 45 H 0.39 9.17 7.80 -40.82 -0.32 8.85 16 46 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 383.09 15.07 5.77 5.77 Total: -1.00 -32.05 383.09 -9.28 -41.32 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: -6.08 Total: 12.28 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: -3.23 Total: 2.26 kcal Atomic # 7 Polarization: -52.55 SS G_CDS: 0.16 Total: -52.39 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: -0.88 Total: -24.60 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.05 -9.28 -41.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753842704.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.961 kcal (2) G-P(sol) polarization free energy of solvation -32.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds