Wall clock time and date at job start Wed Apr 1 2020 02:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 C 1.52999 * 109.47010 * 120.00125 * 2 1 3 5 5 H 1.08995 * 109.47098 * 299.99700 * 4 2 1 6 6 C 1.53004 * 109.47083 * 59.99777 * 4 2 1 7 7 N 1.46502 * 109.46925 * 175.00128 * 6 4 2 8 8 C 1.34775 * 119.99947 * 180.02562 * 7 6 4 9 9 O 1.21619 * 120.00010 * 359.97438 * 8 7 6 10 10 C 1.47265 * 120.00187 * 179.97438 * 8 7 6 11 11 C 1.38420 * 120.59338 * 359.71747 * 10 8 7 12 12 C 1.41793 * 118.70798 * 179.80847 * 11 10 8 13 13 C 1.40307 * 120.20459 * 180.24334 * 12 11 10 14 14 C 1.36491 * 119.88025 * 180.27193 * 13 12 11 15 15 C 1.38816 * 120.46681 * 359.95629 * 14 13 12 16 16 C 1.37860 * 120.63746 * 0.02562 * 15 14 13 17 17 C 1.39080 * 119.99016 * 0.02562 * 16 15 14 18 18 O 1.35013 * 119.87255 * 179.97438 * 17 16 15 19 19 C 1.34348 * 121.42910 * 179.97438 * 18 17 16 20 20 O 1.21679 * 119.92183 * 180.02562 * 19 18 17 21 21 N 1.46498 * 109.47257 * 179.97438 * 4 2 1 22 22 C 1.36943 * 119.99752 * 84.72207 * 21 4 2 23 23 H 1.08002 * 119.99793 * 0.27665 * 22 21 4 24 24 C 1.38811 * 120.00012 * 180.27737 * 22 21 4 25 25 N 1.31624 * 119.99698 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 120.00072 * 180.02562 * 24 22 21 27 27 H 1.48495 * 109.47159 * 0.02562 * 26 24 22 28 28 H 1.48505 * 109.47290 * 120.00044 * 26 24 22 29 29 H 1.48503 * 109.47163 * 240.00049 * 26 24 22 30 30 H 1.09003 * 109.47062 * 300.00363 * 1 2 3 31 31 H 1.08996 * 109.47077 * 59.99864 * 1 2 3 32 32 H 1.08996 * 109.47248 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.46945 * 239.99919 * 2 1 3 34 34 H 1.09003 * 109.47146 * 179.97438 * 3 2 1 35 35 H 1.08996 * 109.47253 * 300.00028 * 3 2 1 36 36 H 1.08995 * 109.47275 * 60.00121 * 3 2 1 37 37 H 1.08997 * 109.47038 * 294.99798 * 6 4 2 38 38 H 1.08999 * 109.47047 * 55.00424 * 6 4 2 39 39 H 0.96997 * 120.00059 * 359.97438 * 7 6 4 40 40 H 1.07997 * 120.64586 * 0.02562 * 11 10 8 41 41 H 1.08010 * 120.06290 * 0.25215 * 13 12 11 42 42 H 1.07998 * 119.76558 * 179.97438 * 14 13 12 43 43 H 1.08003 * 119.68414 * 180.02562 * 15 14 13 44 44 H 1.07998 * 120.00599 * 180.02562 * 16 15 14 45 45 H 0.97001 * 120.00384 * 265.00562 * 21 4 2 46 46 H 0.96999 * 119.99739 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2075 2.1392 6 6 1.5299 -2.1638 1.2492 7 7 2.1140 -2.8883 2.3807 8 6 1.8059 -4.1848 2.5821 9 8 1.0426 -4.7531 1.8249 10 6 2.3935 -4.9132 3.7191 11 6 3.2682 -4.2801 4.5852 12 6 3.8072 -5.0184 5.6691 13 6 4.6927 -4.4063 6.5690 14 6 5.2119 -5.1248 7.6069 15 6 4.8696 -6.4589 7.7804 16 6 4.0011 -7.0803 6.9085 17 6 3.4594 -6.3701 5.8425 18 8 2.6095 -6.9812 4.9898 19 6 2.0677 -6.3250 3.9502 20 8 1.3045 -6.9027 3.1990 21 7 3.5050 -0.7218 1.2490 22 6 4.1901 0.3552 1.7447 23 1 3.6505 1.2032 2.1400 24 6 5.5782 0.3572 1.7392 25 7 6.2359 -0.6760 1.2570 26 14 6.5129 1.8261 2.4161 27 1 5.5484 2.8484 2.8953 28 1 7.3718 1.3886 3.5458 29 1 7.3616 2.4088 1.3458 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8899 36 1 1.6767 1.9563 0.8899 37 1 0.4436 -2.1650 1.3388 38 1 1.8183 -2.6511 0.3179 39 1 2.7231 -2.4351 2.9844 40 1 3.5322 -3.2430 4.4402 41 1 4.9633 -3.3686 6.4406 42 1 5.8937 -4.6519 8.2983 43 1 5.2876 -7.0153 8.6062 44 1 3.7414 -8.1186 7.0533 45 1 3.9897 -1.4834 0.8939 46 1 7.2058 -0.6748 1.2535 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753842704.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:41:06 Heat of formation + Delta-G solvation = -75.229265 kcal Electronic energy + Delta-G solvation = -29939.199688 eV Core-core repulsion = 25793.995017 eV Total energy + Delta-G solvation = -4145.204671 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.01074 -40.83261 -39.95019 -38.78589 -38.23860 -36.04300 -35.11675 -34.86769 -32.24275 -31.87967 -31.23755 -29.46401 -27.47291 -26.40136 -25.71650 -25.18617 -24.05805 -23.30803 -22.16457 -20.91223 -20.46275 -19.65814 -18.92776 -18.66652 -18.00161 -17.39899 -17.19882 -16.88504 -16.41783 -16.16201 -16.03712 -15.79372 -15.61024 -15.21957 -14.95484 -14.89354 -14.67323 -14.62003 -14.27975 -14.24391 -13.80217 -13.42505 -13.30155 -12.89444 -12.87351 -12.84937 -12.69724 -12.44715 -12.43499 -12.25525 -11.94152 -11.76093 -11.75783 -11.69023 -11.43824 -11.26795 -11.02568 -10.78993 -10.14171 -9.86034 -9.51051 -8.94120 -7.83860 -5.11834 -1.22901 -0.00445 0.49149 1.07962 1.18765 1.51834 1.56595 1.63001 2.06256 2.15724 2.62676 2.67909 2.81576 3.20830 3.26809 3.49415 3.70232 3.85847 3.92551 3.95052 4.16302 4.21880 4.29123 4.32202 4.34490 4.40218 4.45603 4.50059 4.66147 4.78005 4.87688 4.93654 4.97414 4.99060 5.07614 5.16222 5.25381 5.27544 5.31495 5.35888 5.48567 5.61632 5.63980 5.67614 5.78581 5.97034 6.22131 6.35330 6.48319 7.13898 7.43765 8.13291 8.39987 9.38930 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.009347 B = 0.003622 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2994.869493 B = 7727.961253 C =10226.456595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.107 4.107 3 C -0.134 4.134 4 C 0.175 3.825 5 H 0.064 0.936 6 C 0.122 3.878 7 N -0.700 5.700 8 C 0.564 3.436 9 O -0.569 6.569 10 C -0.298 4.298 11 C 0.087 3.913 12 C -0.187 4.187 13 C -0.038 4.038 14 C -0.140 4.140 15 C -0.029 4.029 16 C -0.150 4.150 17 C 0.132 3.868 18 O -0.272 6.272 19 C 0.522 3.478 20 O -0.479 6.479 21 N -0.728 5.728 22 C -0.213 4.213 23 H 0.082 0.918 24 C -0.067 4.067 25 N -0.967 5.967 26 Si 0.956 3.044 27 H -0.267 1.267 28 H -0.294 1.294 29 H -0.308 1.308 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.055 0.945 33 H 0.048 0.952 34 H 0.051 0.949 35 H 0.049 0.951 36 H 0.049 0.951 37 H 0.082 0.918 38 H 0.048 0.952 39 H 0.411 0.589 40 H 0.177 0.823 41 H 0.163 0.837 42 H 0.171 0.829 43 H 0.182 0.818 44 H 0.160 0.840 45 H 0.372 0.628 46 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.518 -5.494 17.075 18.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.129 4.129 3 C -0.191 4.191 4 C 0.066 3.934 5 H 0.082 0.918 6 C -0.002 4.002 7 N -0.352 5.352 8 C 0.352 3.648 9 O -0.449 6.449 10 C -0.303 4.303 11 C 0.067 3.933 12 C -0.188 4.188 13 C -0.056 4.056 14 C -0.158 4.158 15 C -0.047 4.047 16 C -0.168 4.168 17 C 0.088 3.912 18 O -0.184 6.184 19 C 0.369 3.631 20 O -0.366 6.366 21 N -0.368 5.368 22 C -0.345 4.345 23 H 0.099 0.901 24 C -0.260 4.260 25 N -0.618 5.618 26 Si 0.788 3.212 27 H -0.191 1.191 28 H -0.221 1.221 29 H -0.236 1.236 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.100 0.900 38 H 0.066 0.934 39 H 0.249 0.751 40 H 0.194 0.806 41 H 0.181 0.819 42 H 0.189 0.811 43 H 0.199 0.801 44 H 0.178 0.822 45 H 0.204 0.796 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -3.472 -6.165 16.279 17.750 hybrid contribution 1.087 0.615 -0.448 1.326 sum -2.385 -5.550 15.831 16.944 Atomic orbital electron populations 1.21863 0.94127 1.01753 1.02245 1.21631 0.95804 0.96963 0.98479 1.21727 1.01752 0.95269 1.00359 1.20672 0.84124 0.91608 0.97011 0.91829 1.21700 0.98133 0.92305 0.88081 1.45717 1.48566 1.09865 1.31079 1.17637 0.81050 0.82049 0.84056 1.90811 1.37640 1.68418 1.48039 1.21986 1.10135 0.94748 1.03418 1.22808 0.83440 1.00500 0.86529 1.18294 1.06392 0.93333 1.00740 1.21550 0.91019 1.01603 0.91454 1.21456 1.01100 0.94644 0.98592 1.21845 0.91361 0.94674 0.96778 1.21028 1.00261 1.02224 0.93269 1.19869 0.89729 0.91471 0.90131 1.83642 1.53286 1.45546 1.35889 1.20156 0.78780 0.86121 0.78031 1.90984 1.33545 1.70335 1.41717 1.42622 1.00356 1.20081 1.73711 1.19517 0.88735 0.96383 1.29836 0.90056 1.25313 0.97494 0.99673 1.03503 1.69823 1.06366 1.31668 1.53966 0.85319 0.78844 0.80092 0.76973 1.19113 1.22144 1.23621 0.91975 0.92170 0.92623 0.93358 0.93022 0.93211 0.93202 0.89990 0.93375 0.75088 0.80573 0.81943 0.81107 0.80074 0.82247 0.79608 0.94449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.62 8.84 71.98 0.64 -2.99 16 2 C -0.11 -3.44 2.69 -10.79 -0.03 -3.47 16 3 C -0.13 -4.44 8.26 71.98 0.59 -3.85 16 4 C 0.17 6.01 2.18 44.99 0.10 6.11 16 5 H 0.06 2.12 8.08 -2.39 -0.02 2.10 16 6 C 0.12 4.14 4.73 86.38 0.41 4.55 16 7 N -0.70 -23.57 5.34 -466.53 -2.49 -26.06 16 8 C 0.56 21.57 7.77 86.62 0.67 22.24 16 9 O -0.57 -26.63 15.46 15.82 0.24 -26.38 16 10 C -0.30 -9.79 6.05 -18.64 -0.11 -9.90 16 11 C 0.09 2.08 9.36 23.19 0.22 2.29 16 12 C -0.19 -3.76 5.74 -21.31 -0.12 -3.88 16 13 C -0.04 -0.50 9.72 22.37 0.22 -0.28 16 14 C -0.14 -1.12 9.97 22.00 0.22 -0.90 16 15 C -0.03 -0.21 10.02 22.32 0.22 0.01 16 16 C -0.15 -2.04 9.98 22.38 0.22 -1.82 16 17 C 0.13 2.89 6.75 23.06 0.16 3.05 16 18 O -0.27 -8.08 9.80 13.53 0.13 -7.94 16 19 C 0.52 19.07 8.13 70.04 0.57 19.64 16 20 O -0.48 -21.60 16.30 25.98 0.42 -21.17 16 21 N -0.73 -31.25 4.44 -322.94 -1.44 -32.68 16 22 C -0.21 -9.99 7.55 84.03 0.63 -9.35 16 23 H 0.08 3.67 7.38 -2.91 -0.02 3.64 16 24 C -0.07 -3.43 5.50 84.86 0.47 -2.96 16 25 N -0.97 -53.78 13.06 21.65 0.28 -53.50 16 26 Si 0.96 41.66 29.55 68.60 2.03 43.69 16 27 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 28 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 29 H -0.31 -14.11 7.11 99.48 0.71 -13.41 16 30 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.05 1.39 6.54 -2.39 -0.02 1.38 16 33 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.05 2.08 5.99 -2.39 -0.01 2.07 16 35 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.08 2.60 6.71 -2.39 -0.02 2.58 16 38 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.41 12.70 6.21 -92.71 -0.58 12.13 16 40 H 0.18 3.52 6.46 -2.91 -0.02 3.50 16 41 H 0.16 1.56 8.06 -2.91 -0.02 1.54 16 42 H 0.17 0.32 8.06 -2.91 -0.02 0.30 16 43 H 0.18 -0.07 8.06 -2.91 -0.02 -0.10 16 44 H 0.16 1.64 8.06 -2.91 -0.02 1.61 16 45 H 0.37 18.10 7.80 -92.71 -0.72 17.37 16 46 H 0.25 13.58 8.31 -92.71 -0.77 12.81 16 Total: -1.00 -74.97 383.09 3.99 -70.98 By element: Atomic # 1 Polarization: 34.83 SS G_CDS: -0.26 Total: 34.57 kcal Atomic # 6 Polarization: 13.43 SS G_CDS: 5.07 Total: 18.50 kcal Atomic # 7 Polarization: -108.60 SS G_CDS: -3.64 Total: -112.24 kcal Atomic # 8 Polarization: -56.30 SS G_CDS: 0.80 Total: -55.50 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.69 kcal Total: -74.97 3.99 -70.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753842704.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.249 kcal (2) G-P(sol) polarization free energy of solvation -74.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds