Wall clock time and date at job start Wed Apr 1 2020 03:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 O 1.42899 * 109.47412 * 196.88341 * 3 2 1 5 5 C 1.35708 * 117.00513 * 180.02562 * 4 3 2 6 6 C 1.38999 * 119.90840 * 359.72007 * 5 4 3 7 7 C 1.37698 * 120.08711 * 179.76376 * 6 5 4 8 8 C 1.39729 * 119.91190 * 0.51372 * 7 6 5 9 9 C 1.47608 * 120.08977 * 179.71774 * 8 7 6 10 10 O 1.21584 * 120.00172 * 180.02562 * 9 8 7 11 11 N 1.34772 * 119.99723 * 0.02562 * 9 8 7 12 12 C 1.46508 * 119.99804 * 179.97438 * 11 9 8 13 13 C 1.52997 * 109.47161 * 179.97438 * 12 11 9 14 14 H 1.09010 * 109.50960 * 59.89754 * 13 12 11 15 15 C 1.53289 * 109.51396 * 179.97438 * 13 12 11 16 16 N 1.47155 * 108.38784 * 172.22739 * 15 13 12 17 17 C 1.36933 * 120.98188 * 129.48450 * 16 15 13 18 18 H 1.07999 * 119.99905 * 206.21735 * 17 16 15 19 19 C 1.38815 * 120.00149 * 26.22723 * 17 16 15 20 20 N 1.31618 * 119.99875 * 16.91188 * 19 17 16 21 21 Si 1.86799 * 120.00031 * 196.91524 * 19 17 16 22 22 H 1.48503 * 109.47136 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47115 * 119.99491 * 21 19 17 24 24 H 1.48499 * 109.47200 * 239.99589 * 21 19 17 25 25 C 1.47153 * 118.03102 * 309.46607 * 16 15 13 26 26 C 1.53293 * 108.38615 * 50.53456 * 25 16 15 27 27 O 1.42958 * 109.22504 * 307.69589 * 26 25 16 28 28 C 1.39736 * 119.82620 * 359.74219 * 8 7 6 29 29 C 1.37710 * 119.90723 * 0.02562 * 28 8 7 30 30 H 4.38448 * 5.44400 * 179.97438 * 4 1 2 31 31 H 1.09009 * 109.47216 * 316.88182 * 3 2 1 32 32 H 1.09000 * 109.47502 * 76.87927 * 3 2 1 33 33 H 1.08003 * 119.95331 * 0.02562 * 6 5 4 34 34 H 1.08004 * 120.04750 * 180.27738 * 7 6 5 35 35 H 0.97000 * 120.00454 * 359.97438 * 11 9 8 36 36 H 1.09001 * 109.46826 * 300.00152 * 12 11 9 37 37 H 1.08994 * 109.47087 * 59.99604 * 12 11 9 38 38 H 1.09002 * 109.68307 * 291.95106 * 15 13 12 39 39 H 1.09008 * 109.68180 * 52.50152 * 15 13 12 40 40 H 0.97001 * 119.99851 * 180.02562 * 20 19 17 41 41 H 1.09004 * 109.67676 * 170.25617 * 25 16 15 42 42 H 1.09002 * 109.68132 * 290.77171 * 25 16 15 43 43 H 1.09008 * 109.51255 * 67.62114 * 26 25 16 44 44 H 1.08997 * 109.51548 * 187.77059 * 26 25 16 45 45 H 1.07996 * 120.04405 * 179.97438 * 28 8 7 46 46 H 1.07994 * 119.95286 * 180.02562 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 8 3.1218 1.2900 0.3913 5 6 4.4671 1.4610 0.4424 6 6 5.3125 0.4037 0.1270 7 6 6.6781 0.5745 0.1730 8 6 7.2137 1.8095 0.5477 9 6 8.6769 1.9951 0.6043 10 8 9.1412 3.0703 0.9310 11 7 9.4983 0.9727 0.2938 12 6 10.9507 1.1571 0.3495 13 6 11.6459 -0.1473 -0.0458 14 1 11.3521 -0.4240 -1.0585 15 6 13.1656 0.0447 0.0115 16 7 13.8068 -1.2647 -0.1880 17 6 14.8012 -1.4287 -1.1150 18 1 14.9714 -2.3986 -1.5584 19 6 15.5907 -0.3484 -1.4845 20 7 15.6224 0.7313 -0.7324 21 14 16.6079 -0.4269 -3.0493 22 1 16.3986 -1.7401 -3.7104 23 1 16.1885 0.6624 -3.9675 24 1 18.0454 -0.2655 -2.7139 25 6 13.3479 -2.3925 0.6384 26 6 11.8192 -2.4657 0.5505 27 8 11.2678 -1.1843 0.8628 28 6 6.3604 2.8684 0.8691 29 6 4.9958 2.6909 0.8161 30 1 -1.0502 -0.0003 -0.0003 31 1 3.0097 -0.7494 0.7025 32 1 3.0095 -0.2325 -1.0008 33 1 4.8978 -0.5517 -0.1585 34 1 7.3345 -0.2461 -0.0765 35 1 9.1280 0.1148 0.0336 36 1 11.2431 1.9487 -0.3404 37 1 11.2435 1.4318 1.3628 38 1 13.4789 0.7306 -0.7756 39 1 13.4484 0.4476 0.9841 40 1 16.1738 1.4863 -0.9909 41 1 13.7819 -3.3206 0.2664 42 1 13.6495 -2.2353 1.6740 43 1 11.5259 -2.7520 -0.4595 44 1 11.4486 -3.2045 1.2612 45 1 6.7705 3.8243 1.1596 46 1 4.3356 3.5088 1.0640 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035537767.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:38 Heat of formation + Delta-G solvation = -4.037037 kcal Electronic energy + Delta-G solvation = -28656.779074 eV Core-core repulsion = 24514.661530 eV Total energy + Delta-G solvation = -4142.117544 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.75299 -39.62935 -38.51088 -37.38084 -34.86438 -34.34763 -33.96832 -31.79589 -31.31404 -31.03618 -30.21337 -28.13394 -27.32444 -25.58588 -23.60231 -23.29127 -22.90462 -21.64988 -20.52837 -19.65839 -18.98599 -18.83628 -17.70735 -16.98567 -16.56076 -16.48919 -16.01917 -15.55124 -15.21951 -15.13497 -14.75141 -14.52023 -14.35368 -14.20441 -13.91067 -13.72974 -13.42417 -13.32103 -13.27171 -12.91976 -12.82791 -12.54352 -12.31709 -11.77367 -11.58054 -11.47047 -11.13429 -11.00791 -10.88235 -10.74755 -10.70447 -10.44774 -10.27490 -10.08080 -9.86229 -9.67960 -9.40609 -9.11696 -8.93000 -8.58624 -8.54425 -6.79132 -5.87562 -3.31391 0.67360 1.00921 1.74521 2.20927 2.80480 3.08850 3.27296 3.32856 3.40117 3.41942 3.69644 3.81975 4.21972 4.31344 4.41217 4.48075 4.57893 4.68238 4.74301 4.93477 5.08358 5.16542 5.28992 5.29637 5.32911 5.50655 5.60004 5.62706 5.77890 5.82593 5.89151 5.90722 6.00102 6.07773 6.13796 6.21451 6.31095 6.34613 6.47047 6.64221 6.75029 6.88116 6.96263 7.03699 7.44997 7.64346 7.68283 7.80275 8.29618 8.33199 9.07629 9.70607 10.27501 11.20535 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.018439 B = 0.001906 C = 0.001834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.191701 B =14689.124163 C =15266.985213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.203 4.203 3 C 0.171 3.829 4 O -0.308 6.308 5 C 0.150 3.850 6 C -0.217 4.217 7 C -0.042 4.042 8 C -0.165 4.165 9 C 0.556 3.444 10 O -0.543 6.543 11 N -0.715 5.715 12 C 0.132 3.868 13 C 0.055 3.945 14 H 0.056 0.944 15 C 0.152 3.848 16 N -0.594 5.594 17 C -0.257 4.257 18 H 0.069 0.931 19 C 0.003 3.997 20 N -0.901 5.901 21 Si 0.904 3.096 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.289 1.289 25 C 0.108 3.892 26 C 0.050 3.950 27 O -0.390 6.390 28 C -0.019 4.019 29 C -0.158 4.158 30 H 0.225 0.775 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.135 0.865 34 H 0.132 0.868 35 H 0.400 0.600 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.096 0.904 39 H 0.032 0.968 40 H 0.256 0.744 41 H 0.062 0.938 42 H 0.027 0.973 43 H 0.043 0.957 44 H 0.082 0.918 45 H 0.145 0.855 46 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.626 -2.505 1.288 26.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.203 4.203 3 C 0.097 3.903 4 O -0.222 6.222 5 C 0.105 3.895 6 C -0.236 4.236 7 C -0.061 4.061 8 C -0.169 4.169 9 C 0.343 3.657 10 O -0.422 6.422 11 N -0.366 5.366 12 C 0.009 3.991 13 C -0.005 4.005 14 H 0.074 0.926 15 C 0.026 3.974 16 N -0.318 5.318 17 C -0.386 4.386 18 H 0.087 0.913 19 C -0.196 4.196 20 N -0.545 5.545 21 Si 0.734 3.266 22 H -0.202 1.202 23 H -0.214 1.214 24 H -0.216 1.216 25 C -0.018 4.018 26 C -0.028 4.028 27 O -0.310 6.310 28 C -0.038 4.038 29 C -0.176 4.176 30 H 0.242 0.758 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.153 0.847 34 H 0.150 0.850 35 H 0.236 0.764 36 H 0.102 0.898 37 H 0.094 0.906 38 H 0.115 0.885 39 H 0.050 0.950 40 H 0.066 0.934 41 H 0.080 0.920 42 H 0.045 0.955 43 H 0.061 0.939 44 H 0.100 0.900 45 H 0.163 0.837 46 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -26.391 -1.450 1.680 26.484 hybrid contribution 0.506 -0.799 -1.171 1.505 sum -25.885 -2.250 0.509 25.988 Atomic orbital electron populations 1.25060 0.95905 0.96491 0.99782 1.22234 0.93519 1.03051 1.01493 1.19325 0.85057 0.84468 1.01441 1.86072 1.19541 1.33319 1.83225 1.19196 0.81551 0.94402 0.94379 1.21163 0.94079 0.99134 1.09221 1.21147 0.94635 0.96170 0.94145 1.19956 0.93501 0.95342 1.08081 1.18126 0.86026 0.84136 0.77373 1.90782 1.77440 1.25868 1.48077 1.45888 1.07304 1.14401 1.68998 1.21451 0.77729 0.96779 1.03153 1.23157 0.98783 0.86444 0.92100 0.92606 1.21313 0.85366 0.89050 1.01714 1.44051 1.40855 1.04932 1.41953 1.19227 1.08511 0.96495 1.14402 0.91296 1.25063 0.97661 0.97744 0.99121 1.70025 1.41801 1.06314 1.36347 0.86197 0.79725 0.77586 0.83097 1.20244 1.21419 1.21594 1.21604 0.92340 0.92790 0.95054 1.23005 0.95807 0.84555 0.99416 1.87778 1.72129 1.17901 1.53165 1.21116 0.91323 0.98758 0.92636 1.20402 0.95040 0.95912 1.06286 0.75801 0.89158 0.89170 0.84735 0.84989 0.76448 0.89807 0.90556 0.88544 0.95003 0.93414 0.91982 0.95532 0.93877 0.90020 0.83709 0.84432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.91 19.25 29.55 0.57 -0.35 16 2 C -0.20 -1.51 13.73 -37.12 -0.51 -2.02 16 3 C 0.17 1.10 5.21 34.37 0.18 1.28 16 4 O -0.31 -2.80 10.08 -18.83 -0.19 -2.99 16 5 C 0.15 1.40 6.70 -39.02 -0.26 1.13 16 6 C -0.22 -1.78 9.01 -39.50 -0.36 -2.14 16 7 C -0.04 -0.40 9.53 -39.22 -0.37 -0.77 16 8 C -0.17 -1.98 5.88 -104.96 -0.62 -2.60 16 9 C 0.56 8.39 7.76 -12.44 -0.10 8.29 16 10 O -0.54 -10.09 16.34 5.29 0.09 -10.00 16 11 N -0.71 -10.24 5.40 -61.32 -0.33 -10.58 16 12 C 0.13 2.23 5.37 -4.04 -0.02 2.21 16 13 C 0.05 1.01 2.86 -26.58 -0.08 0.93 16 14 H 0.06 1.02 8.14 -51.92 -0.42 0.60 16 15 C 0.15 3.54 4.73 -3.54 -0.02 3.52 16 16 N -0.59 -14.57 3.05 -171.82 -0.52 -15.10 16 17 C -0.26 -6.88 9.65 -15.06 -0.15 -7.03 16 18 H 0.07 1.80 7.88 -52.49 -0.41 1.39 16 19 C 0.00 0.08 4.95 -17.43 -0.09 0.00 16 20 N -0.90 -25.65 11.14 55.49 0.62 -25.03 16 21 Si 0.90 21.21 29.59 -169.99 -5.03 16.18 16 22 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 25 C 0.11 2.21 6.73 -3.53 -0.02 2.19 16 26 C 0.05 0.85 6.98 37.31 0.26 1.11 16 27 O -0.39 -7.03 10.14 -35.23 -0.36 -7.39 16 28 C -0.02 -0.21 9.59 -39.21 -0.38 -0.59 16 29 C -0.16 -1.51 9.97 -39.50 -0.39 -1.91 16 30 H 0.23 0.47 7.80 -54.08 -0.42 0.05 16 31 H 0.09 0.43 7.64 -51.92 -0.40 0.03 16 32 H 0.09 0.43 7.66 -51.93 -0.40 0.03 16 33 H 0.13 0.73 6.28 -52.48 -0.33 0.40 16 34 H 0.13 1.02 6.39 -52.48 -0.34 0.69 16 35 H 0.40 4.84 6.38 -40.82 -0.26 4.58 16 36 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 37 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 38 H 0.10 2.47 6.14 -51.93 -0.32 2.15 16 39 H 0.03 0.80 8.14 -51.92 -0.42 0.38 16 40 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 41 H 0.06 1.19 7.96 -51.93 -0.41 0.78 16 42 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.04 0.70 8.14 -51.92 -0.42 0.28 16 44 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 45 H 0.15 1.57 7.64 -52.49 -0.40 1.17 16 46 H 0.14 1.10 8.06 -52.49 -0.42 0.67 16 LS Contribution 390.10 15.07 5.88 5.88 Total: -1.00 -33.41 390.10 -8.40 -41.81 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -6.21 Total: 3.95 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: -2.34 Total: 3.26 kcal Atomic # 7 Polarization: -50.47 SS G_CDS: -0.24 Total: -50.70 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: -0.46 Total: -20.38 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.18 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.41 -8.40 -41.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035537767.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.771 kcal (2) G-P(sol) polarization free energy of solvation -33.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds