Wall clock time and date at job start Wed Apr 1 2020 03:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 O 1.42900 * 109.47235 * 188.27778 * 3 2 1 5 5 C 1.35708 * 117.00499 * 179.97438 * 4 3 2 6 6 C 1.38997 * 119.91594 * 180.02562 * 5 4 3 7 7 C 1.37702 * 120.09093 * 179.97438 * 6 5 4 8 8 C 1.39728 * 119.90868 * 0.02681 * 7 6 5 9 9 C 1.47612 * 120.08745 * 180.02562 * 8 7 6 10 10 O 1.21576 * 119.99711 * 359.97438 * 9 8 7 11 11 N 1.34775 * 119.99750 * 180.02562 * 9 8 7 12 12 C 1.46504 * 119.99608 * 179.72179 * 11 9 8 13 13 C 1.52999 * 109.47120 * 180.26920 * 12 11 9 14 14 H 1.08994 * 109.51152 * 304.99861 * 13 12 11 15 15 C 1.53298 * 109.51011 * 184.89893 * 13 12 11 16 16 N 1.47152 * 108.38275 * 187.77568 * 15 13 12 17 17 C 1.36932 * 120.98262 * 230.55792 * 16 15 13 18 18 H 1.08005 * 120.00247 * 26.58394 * 17 16 15 19 19 C 1.38817 * 120.00057 * 206.58942 * 17 16 15 20 20 N 1.31614 * 120.00208 * 17.02035 * 19 17 16 21 21 Si 1.86798 * 119.99921 * 197.02327 * 19 17 16 22 22 H 1.48508 * 109.47236 * 94.14989 * 21 19 17 23 23 H 1.48497 * 109.47095 * 214.14741 * 21 19 17 24 24 H 1.48500 * 109.47335 * 334.15127 * 21 19 17 25 25 C 1.47160 * 118.03661 * 50.53375 * 16 15 13 26 26 C 1.53298 * 108.38242 * 309.46749 * 25 16 15 27 27 O 1.42959 * 109.26737 * 52.27718 * 26 25 16 28 28 C 1.39739 * 119.82809 * 0.26959 * 8 7 6 29 29 C 1.37698 * 119.90587 * 359.40217 * 28 8 7 30 30 H 4.38452 * 5.44464 * 179.97438 * 4 1 2 31 31 H 1.08999 * 109.47713 * 68.27966 * 3 2 1 32 32 H 1.09009 * 109.47314 * 308.27640 * 3 2 1 33 33 H 1.08004 * 119.95334 * 0.02562 * 6 5 4 34 34 H 1.07991 * 120.04351 * 180.02562 * 7 6 5 35 35 H 0.97001 * 120.00413 * 359.97438 * 11 9 8 36 36 H 1.08996 * 109.47129 * 300.27234 * 12 11 9 37 37 H 1.09005 * 109.46989 * 60.26716 * 12 11 9 38 38 H 1.09001 * 109.67993 * 307.49572 * 15 13 12 39 39 H 1.08995 * 109.68608 * 68.01367 * 15 13 12 40 40 H 0.97001 * 120.00458 * 180.02562 * 20 19 17 41 41 H 1.08997 * 109.67669 * 69.18638 * 25 16 15 42 42 H 1.09000 * 109.67973 * 189.70731 * 25 16 15 43 43 H 1.09002 * 109.50827 * 172.22832 * 26 25 16 44 44 H 1.09004 * 109.50860 * 292.37425 * 26 25 16 45 45 H 1.08002 * 120.04461 * 179.72547 * 28 8 7 46 46 H 1.08007 * 119.95615 * 180.33703 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1217 1.3341 0.1940 5 6 4.4670 1.5107 0.2201 6 6 4.9958 2.7827 0.4057 7 6 6.3603 2.9659 0.4334 8 6 7.2136 1.8710 0.2740 9 6 8.6769 2.0628 0.3035 10 8 9.1410 3.1746 0.4663 11 7 9.4983 1.0055 0.1491 12 6 10.9506 1.1968 0.1723 13 6 11.6459 -0.1510 -0.0303 14 1 11.2894 -0.8604 0.7163 15 6 13.1614 0.0277 0.1155 16 7 13.8162 -1.2335 -0.2666 17 6 14.7476 -1.8194 0.5485 18 1 14.7190 -1.6447 1.6140 19 6 15.7286 -2.6377 0.0055 20 7 15.9821 -2.5937 -1.2853 21 14 16.6889 -3.8016 1.1067 22 1 16.0425 -5.1386 1.0969 23 1 18.0815 -3.9214 0.6052 24 1 16.7059 -3.2702 2.4932 25 6 13.4402 -1.8468 -1.5504 26 6 11.9111 -1.9340 -1.6150 27 8 11.3531 -0.6471 -1.3387 28 6 6.6782 0.5947 0.0814 29 6 5.3126 0.4189 0.0618 30 1 -1.0503 -0.0004 -0.0002 31 1 3.0096 -0.3795 -0.9547 32 1 3.0096 -0.6358 0.8068 33 1 4.3354 3.6284 0.5292 34 1 6.7702 3.9544 0.5780 35 1 9.1280 0.1185 0.0189 36 1 11.2401 1.8788 -0.6271 37 1 11.2464 1.6173 1.1335 38 1 13.5011 0.8306 -0.5387 39 1 13.4047 0.2695 1.1501 40 1 16.6673 -3.1658 -1.6649 41 1 13.8080 -1.2326 -2.3722 42 1 13.8688 -2.8467 -1.6189 43 1 11.6067 -2.2567 -2.6107 44 1 11.5557 -2.6508 -0.8746 45 1 7.3345 -0.2534 -0.0466 46 1 4.8979 -0.5681 -0.0816 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035537771.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:41 Heat of formation + Delta-G solvation = -4.358629 kcal Electronic energy + Delta-G solvation = -28479.717134 eV Core-core repulsion = 24337.585644 eV Total energy + Delta-G solvation = -4142.131489 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.80143 -39.70871 -38.53427 -37.43529 -34.97017 -34.33163 -33.98650 -31.92390 -31.36987 -30.93472 -30.21271 -28.18459 -27.43498 -25.57610 -23.64881 -23.21763 -22.94361 -21.76752 -20.63230 -19.66780 -19.01026 -18.87684 -17.77998 -16.91817 -16.58959 -16.58047 -16.06835 -15.64330 -15.31042 -15.02829 -14.88061 -14.55335 -14.44097 -14.22821 -13.88647 -13.74872 -13.46119 -13.41130 -13.19842 -13.04006 -12.76933 -12.60152 -12.44422 -11.81997 -11.61954 -11.50289 -11.15818 -11.03618 -10.89128 -10.75944 -10.72422 -10.44178 -10.28354 -10.04583 -9.97703 -9.68321 -9.45127 -9.11110 -9.04802 -8.60361 -8.57974 -6.79165 -5.87869 -3.31898 0.61919 0.96528 1.72384 2.19377 2.73195 3.06224 3.17985 3.31787 3.39248 3.40734 3.63058 3.79978 4.19369 4.27702 4.39972 4.44319 4.54926 4.66202 4.66453 4.88621 5.03764 5.10233 5.25145 5.27574 5.29732 5.45768 5.47702 5.58272 5.73378 5.76279 5.82758 5.87082 5.99018 6.06993 6.12596 6.24098 6.27226 6.33211 6.45031 6.50434 6.72578 6.84463 6.94608 7.06107 7.47364 7.53382 7.67805 7.81177 8.22472 8.29797 9.07745 9.70357 10.27342 11.20286 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.018620 B = 0.001814 C = 0.001717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.372381 B =15433.594744 C =16306.977058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.203 4.203 3 C 0.171 3.829 4 O -0.308 6.308 5 C 0.152 3.848 6 C -0.158 4.158 7 C -0.019 4.019 8 C -0.168 4.168 9 C 0.558 3.442 10 O -0.544 6.544 11 N -0.716 5.716 12 C 0.130 3.870 13 C 0.065 3.935 14 H 0.058 0.942 15 C 0.122 3.878 16 N -0.593 5.593 17 C -0.257 4.257 18 H 0.069 0.931 19 C 0.003 3.997 20 N -0.902 5.902 21 Si 0.906 3.094 22 H -0.287 1.287 23 H -0.290 1.290 24 H -0.278 1.278 25 C 0.139 3.861 26 C 0.040 3.960 27 O -0.390 6.390 28 C -0.042 4.042 29 C -0.217 4.217 30 H 0.225 0.775 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.138 0.862 34 H 0.145 0.855 35 H 0.401 0.599 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.031 0.969 39 H 0.064 0.936 40 H 0.255 0.745 41 H 0.029 0.971 42 H 0.093 0.907 43 H 0.082 0.918 44 H 0.040 0.960 45 H 0.132 0.868 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.412 4.016 1.907 27.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.204 4.204 3 C 0.097 3.903 4 O -0.221 6.221 5 C 0.106 3.894 6 C -0.177 4.177 7 C -0.038 4.038 8 C -0.171 4.171 9 C 0.346 3.654 10 O -0.423 6.423 11 N -0.367 5.367 12 C 0.007 3.993 13 C 0.005 3.995 14 H 0.076 0.924 15 C -0.006 4.006 16 N -0.317 5.317 17 C -0.386 4.386 18 H 0.087 0.913 19 C -0.196 4.196 20 N -0.546 5.546 21 Si 0.735 3.265 22 H -0.214 1.214 23 H -0.217 1.217 24 H -0.203 1.203 25 C 0.014 3.986 26 C -0.038 4.038 27 O -0.309 6.309 28 C -0.060 4.060 29 C -0.236 4.236 30 H 0.242 0.758 31 H 0.109 0.891 32 H 0.108 0.892 33 H 0.156 0.844 34 H 0.163 0.837 35 H 0.237 0.763 36 H 0.095 0.905 37 H 0.101 0.899 38 H 0.048 0.952 39 H 0.083 0.917 40 H 0.065 0.935 41 H 0.047 0.953 42 H 0.111 0.889 43 H 0.100 0.900 44 H 0.059 0.941 45 H 0.150 0.850 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -27.138 4.939 1.829 27.645 hybrid contribution 0.465 -1.594 0.460 1.723 sum -26.673 3.345 2.289 26.979 Atomic orbital electron populations 1.25068 0.95907 0.96192 0.99995 1.22225 0.93509 1.03208 1.01410 1.19329 0.85083 0.83103 1.02773 1.86073 1.19506 1.29553 1.86997 1.19204 0.81590 0.94394 0.94213 1.20407 0.95044 0.95114 1.07102 1.21101 0.91335 0.99168 0.92183 1.19928 0.93405 0.94416 1.09333 1.18118 0.86064 0.84546 0.76697 1.90773 1.77477 1.24075 1.49931 1.45872 1.07157 1.10489 1.73184 1.21450 0.78153 0.97055 1.02680 1.22812 0.97470 0.93507 0.85748 0.92359 1.21444 0.89427 0.90252 0.99452 1.44060 1.45815 1.21041 1.20808 1.19220 1.05218 1.24757 0.89408 0.91291 1.25055 0.96779 1.01645 0.96086 1.70036 1.33480 1.40066 1.11022 0.86225 0.79101 0.81151 0.80000 1.21415 1.21659 1.20306 1.21438 0.89049 1.00561 0.87587 1.23325 0.97463 0.83579 0.99453 1.87792 1.75302 1.35708 1.32109 1.21150 0.94669 0.96335 0.93880 1.21175 0.94081 0.98484 1.09847 0.75787 0.89129 0.89152 0.84403 0.83726 0.76344 0.90475 0.89947 0.95158 0.91717 0.93480 0.95319 0.88854 0.90038 0.94126 0.84975 0.84685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 19.25 29.55 0.57 -0.32 16 2 C -0.20 -1.47 13.73 -37.13 -0.51 -1.98 16 3 C 0.17 1.06 5.21 34.37 0.18 1.24 16 4 O -0.31 -2.70 10.08 -18.83 -0.19 -2.89 16 5 C 0.15 1.34 6.70 -39.02 -0.26 1.08 16 6 C -0.16 -1.43 9.97 -39.50 -0.39 -1.83 16 7 C -0.02 -0.20 9.58 -39.22 -0.38 -0.57 16 8 C -0.17 -1.88 5.88 -104.95 -0.62 -2.50 16 9 C 0.56 7.79 7.76 -12.44 -0.10 7.70 16 10 O -0.54 -9.38 16.34 5.30 0.09 -9.29 16 11 N -0.72 -9.37 5.45 -61.32 -0.33 -9.71 16 12 C 0.13 1.94 5.34 -4.04 -0.02 1.92 16 13 C 0.06 1.09 2.81 -26.58 -0.07 1.02 16 14 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 15 C 0.12 2.48 6.02 -3.53 -0.02 2.46 16 16 N -0.59 -14.56 3.05 -171.82 -0.52 -15.09 16 17 C -0.26 -6.88 9.64 -15.06 -0.15 -7.02 16 18 H 0.07 1.80 7.89 -52.48 -0.41 1.39 16 19 C 0.00 0.09 4.94 -17.43 -0.09 0.00 16 20 N -0.90 -25.65 11.17 55.49 0.62 -25.03 16 21 Si 0.91 21.17 29.59 -169.99 -5.03 16.14 16 22 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 25 C 0.14 3.25 5.44 -3.53 -0.02 3.23 16 26 C 0.04 0.73 6.98 37.31 0.26 0.99 16 27 O -0.39 -7.07 10.33 -35.23 -0.36 -7.43 16 28 C -0.04 -0.37 9.53 -39.22 -0.37 -0.74 16 29 C -0.22 -1.69 9.01 -39.50 -0.36 -2.05 16 30 H 0.23 0.44 7.80 -54.08 -0.42 0.02 16 31 H 0.09 0.41 7.65 -51.93 -0.40 0.01 16 32 H 0.09 0.40 7.65 -51.92 -0.40 0.01 16 33 H 0.14 1.03 8.06 -52.48 -0.42 0.61 16 34 H 0.15 1.46 7.64 -52.49 -0.40 1.06 16 35 H 0.40 4.46 6.49 -40.82 -0.27 4.20 16 36 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 38 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.06 1.26 7.96 -51.93 -0.41 0.84 16 40 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 41 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.09 2.39 6.17 -51.93 -0.32 2.07 16 43 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 44 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.13 0.95 6.39 -52.49 -0.34 0.62 16 46 H 0.14 0.69 6.28 -52.48 -0.33 0.36 16 LS Contribution 390.44 15.07 5.88 5.88 Total: -1.00 -33.39 390.44 -8.41 -41.80 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -6.21 Total: 2.98 kcal Atomic # 6 Polarization: 4.98 SS G_CDS: -2.34 Total: 2.63 kcal Atomic # 7 Polarization: -49.59 SS G_CDS: -0.24 Total: -49.83 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: -0.47 Total: -19.61 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.03 Total: 16.14 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.39 -8.41 -41.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035537771.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.443 kcal (2) G-P(sol) polarization free energy of solvation -33.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds