Wall clock time and date at job start Wed Apr 1 2020 03:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 O 1.42905 * 109.47151 * 337.86844 * 3 2 1 5 5 C 1.35712 * 116.99728 * 180.02562 * 4 3 2 6 6 C 1.38993 * 119.91628 * 359.72258 * 5 4 3 7 7 C 1.37696 * 120.09175 * 179.76291 * 6 5 4 8 8 C 1.39732 * 119.91048 * 0.51535 * 7 6 5 9 9 C 1.47601 * 120.09032 * 179.71934 * 8 7 6 10 10 O 1.21592 * 119.99826 * 180.02562 * 9 8 7 11 11 N 1.34773 * 120.00269 * 0.02562 * 9 8 7 12 12 C 1.46496 * 120.00365 * 179.97438 * 11 9 8 13 13 H 1.08997 * 109.46132 * 34.97130 * 12 11 9 14 14 C 1.53038 * 109.45862 * 274.99867 * 12 11 9 15 15 C 1.53198 * 109.31194 * 178.61218 * 14 12 11 16 16 N 1.46931 * 108.77376 * 54.63670 * 15 14 12 17 17 C 1.36939 * 120.62994 * 126.41305 * 16 15 14 18 18 H 1.07999 * 120.00116 * 331.81989 * 17 16 15 19 19 C 1.38815 * 119.99850 * 151.82499 * 17 16 15 20 20 N 1.31621 * 119.99671 * 343.06906 * 19 17 16 21 21 Si 1.86800 * 119.99913 * 163.07459 * 19 17 16 22 22 H 1.48495 * 109.47242 * 59.99752 * 21 19 17 23 23 H 1.48497 * 109.46943 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.46785 * 299.99539 * 21 19 17 25 25 C 1.46930 * 118.73754 * 306.39097 * 16 15 14 26 26 C 1.53034 * 109.45946 * 154.93252 * 12 11 9 27 27 H 1.09004 * 109.49836 * 301.33621 * 26 12 11 28 28 O 1.42898 * 109.50165 * 61.43615 * 26 12 11 29 29 C 1.39740 * 119.82273 * 359.74027 * 8 7 6 30 30 C 1.37702 * 119.91022 * 0.02562 * 29 8 7 31 31 H 4.38449 * 5.44435 * 179.97438 * 4 1 2 32 32 H 1.09003 * 109.47379 * 97.86966 * 3 2 1 33 33 H 1.09001 * 109.46988 * 217.86786 * 3 2 1 34 34 H 1.08011 * 119.95441 * 0.02562 * 6 5 4 35 35 H 1.08003 * 120.04903 * 180.23279 * 7 6 5 36 36 H 0.97009 * 119.99687 * 0.02562 * 11 9 8 37 37 H 1.09001 * 109.50071 * 298.56429 * 14 12 11 38 38 H 1.08999 * 109.50032 * 58.63346 * 14 12 11 39 39 H 1.08995 * 109.58921 * 174.42035 * 15 14 12 40 40 H 1.08998 * 109.58980 * 294.85057 * 15 14 12 41 41 H 0.97001 * 119.99691 * 180.02562 * 20 19 17 42 42 H 1.08996 * 109.58490 * 173.39345 * 25 16 15 43 43 H 1.08994 * 109.58700 * 293.67858 * 25 16 15 44 44 H 0.96708 * 114.00321 * 180.02562 * 28 26 12 45 45 H 1.07998 * 120.04346 * 179.97438 * 29 8 7 46 46 H 1.08000 * 119.95196 * 179.97438 * 30 29 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1229 -1.2472 0.5076 5 6 4.4684 -1.4110 0.5750 6 6 5.3130 -0.3904 0.1544 7 6 6.6787 -0.5509 0.2258 8 6 7.2154 -1.7460 0.7119 9 6 8.6787 -1.9246 0.7844 10 8 9.1439 -2.9654 1.2073 11 7 9.4993 -0.9341 0.3819 12 6 10.9517 -1.1112 0.4543 13 1 11.2020 -2.1504 0.2411 14 6 11.4403 -0.7468 1.8581 15 6 12.9543 -0.9662 1.9404 16 7 13.6013 -0.2085 0.8606 17 6 14.6116 0.6740 1.1359 18 1 14.6519 1.1662 2.0964 19 6 15.5839 0.9360 0.1804 20 7 15.7414 0.1189 -0.8394 21 14 16.6688 2.4480 0.3421 22 1 17.4277 2.3787 1.6166 23 1 17.6196 2.4991 -0.7975 24 1 15.8219 3.6678 0.3359 25 6 13.1441 -0.4160 -0.5202 26 6 11.6280 -0.2027 -0.5749 27 1 11.2620 -0.4471 -1.5721 28 8 11.3274 1.1621 -0.2770 29 6 6.3629 -2.7717 1.1289 30 6 4.9982 -2.6015 1.0588 31 1 -1.0498 -0.0003 0.0003 32 1 3.0093 0.1415 -1.0180 33 1 3.0090 0.8121 0.6308 34 1 4.8974 0.5315 -0.2251 35 1 7.3343 0.2441 -0.0978 36 1 9.1282 -0.1036 0.0449 37 1 11.2127 0.2994 2.0624 38 1 10.9404 -1.3781 2.5926 39 1 13.3225 -0.6154 2.9044 40 1 13.1765 -2.0272 1.8262 41 1 16.4210 0.3018 -1.5069 42 1 13.6375 0.2980 -1.1797 43 1 13.3841 -1.4312 -0.8359 44 1 11.7243 1.7954 -0.8907 45 1 6.7738 -3.6970 1.5048 46 1 4.3388 -3.3940 1.3805 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090619821.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:51 Heat of formation + Delta-G solvation = -10.048196 kcal Electronic energy + Delta-G solvation = -29167.082858 eV Core-core repulsion = 25024.704651 eV Total energy + Delta-G solvation = -4142.378208 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.75267 -39.74502 -38.20136 -37.20461 -34.80299 -34.36869 -33.96217 -32.25932 -31.37314 -30.63854 -29.26417 -29.01796 -27.95860 -25.22945 -23.64838 -23.00548 -22.30762 -21.69711 -20.22936 -19.51175 -18.95948 -18.78787 -17.68599 -17.08865 -16.56523 -16.55151 -15.82684 -15.42907 -15.23016 -14.98408 -14.72908 -14.45943 -14.23056 -13.90909 -13.76155 -13.66156 -13.41105 -13.32455 -13.16169 -12.77122 -12.53693 -12.14601 -12.00377 -11.81163 -11.48716 -11.26203 -11.14536 -10.99975 -10.79889 -10.70198 -10.60020 -10.47442 -10.19933 -10.06449 -9.83380 -9.61500 -9.39345 -9.19618 -8.77351 -8.54935 -8.46080 -6.68157 -5.82089 -3.22949 0.69240 1.02214 1.75051 2.21197 2.83415 3.09453 3.33734 3.37924 3.42556 3.44154 3.72298 3.82515 4.32372 4.47366 4.49220 4.58751 4.68703 4.71764 4.86135 4.95350 5.10161 5.28555 5.29640 5.32246 5.40148 5.46052 5.57924 5.63906 5.79691 5.91643 5.96060 6.03349 6.13860 6.21726 6.27700 6.33721 6.47774 6.56915 6.80223 6.85981 6.89273 6.96607 6.99087 7.16984 7.42445 7.74102 7.78060 8.22164 8.40497 8.42485 9.17492 9.80551 10.37764 11.26727 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.023857 B = 0.001977 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.399149 B =14157.475260 C =14890.514082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.203 4.203 3 C 0.171 3.829 4 O -0.308 6.308 5 C 0.150 3.850 6 C -0.217 4.217 7 C -0.043 4.043 8 C -0.165 4.165 9 C 0.555 3.445 10 O -0.543 6.543 11 N -0.714 5.714 12 C 0.163 3.837 13 H 0.092 0.908 14 C -0.136 4.136 15 C 0.148 3.852 16 N -0.582 5.582 17 C -0.243 4.243 18 H 0.065 0.935 19 C -0.001 4.001 20 N -0.907 5.907 21 Si 0.903 3.097 22 H -0.283 1.283 23 H -0.292 1.292 24 H -0.284 1.284 25 C 0.146 3.854 26 C 0.073 3.927 27 H 0.043 0.957 28 O -0.560 6.560 29 C -0.020 4.020 30 C -0.158 4.158 31 H 0.225 0.775 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.135 0.865 35 H 0.132 0.868 36 H 0.400 0.600 37 H 0.069 0.931 38 H 0.053 0.947 39 H 0.057 0.943 40 H 0.020 0.980 41 H 0.254 0.746 42 H 0.095 0.905 43 H 0.028 0.972 44 H 0.375 0.625 45 H 0.145 0.855 46 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.480 0.377 -1.308 26.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.203 4.203 3 C 0.097 3.903 4 O -0.222 6.222 5 C 0.104 3.896 6 C -0.236 4.236 7 C -0.062 4.062 8 C -0.169 4.169 9 C 0.342 3.658 10 O -0.422 6.422 11 N -0.364 5.364 12 C 0.059 3.941 13 H 0.109 0.891 14 C -0.176 4.176 15 C 0.021 3.979 16 N -0.304 5.304 17 C -0.373 4.373 18 H 0.083 0.917 19 C -0.198 4.198 20 N -0.552 5.552 21 Si 0.733 3.267 22 H -0.209 1.209 23 H -0.217 1.217 24 H -0.211 1.211 25 C 0.018 3.982 26 C 0.011 3.989 27 H 0.061 0.939 28 O -0.366 6.366 29 C -0.039 4.039 30 C -0.176 4.176 31 H 0.242 0.758 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.152 0.848 35 H 0.150 0.850 36 H 0.235 0.765 37 H 0.088 0.912 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.038 0.962 41 H 0.064 0.936 42 H 0.113 0.887 43 H 0.046 0.954 44 H 0.222 0.778 45 H 0.163 0.837 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -26.446 -0.754 -0.593 26.464 hybrid contribution 0.592 1.688 -0.765 1.945 sum -25.855 0.933 -1.358 25.907 Atomic orbital electron populations 1.25050 0.95900 0.96741 0.99564 1.22238 0.93520 1.02926 1.01592 1.19324 0.85038 0.85673 1.00254 1.86074 1.19529 1.36763 1.79800 1.19191 0.81538 0.94426 0.94441 1.21160 0.94095 0.99926 1.08421 1.21154 0.94612 0.96068 0.94325 1.20004 0.93670 0.96144 1.07064 1.18160 0.85983 0.83777 0.77840 1.90775 1.77353 1.27578 1.46480 1.46135 1.07372 1.17952 1.64930 1.21028 0.77213 0.99313 0.96546 0.89055 1.22304 0.98683 1.01709 0.94944 1.20901 0.89669 0.94513 0.92821 1.43861 1.38863 1.46746 1.00972 1.19142 1.01206 1.15808 1.01151 0.91736 1.25025 0.97056 0.98769 0.98995 1.70008 1.35132 1.35453 1.14637 0.86350 0.80022 0.83196 0.77098 1.20919 1.21746 1.21084 1.21431 0.87636 1.00634 0.88459 1.22845 0.99030 0.82125 0.94851 0.93874 1.86341 1.76051 1.15803 1.58376 1.21118 0.91328 0.98361 0.93082 1.20402 0.95036 0.96589 1.05619 0.75809 0.89187 0.89168 0.84769 0.84981 0.76485 0.91232 0.92826 0.92436 0.96201 0.93602 0.88678 0.95392 0.77820 0.83733 0.84456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.93 19.25 29.55 0.57 -0.36 16 2 C -0.20 -1.53 13.73 -37.12 -0.51 -2.03 16 3 C 0.17 1.13 5.21 34.37 0.18 1.30 16 4 O -0.31 -2.85 10.08 -18.84 -0.19 -3.04 16 5 C 0.15 1.42 6.70 -39.02 -0.26 1.16 16 6 C -0.22 -1.83 9.01 -39.50 -0.36 -2.19 16 7 C -0.04 -0.42 9.53 -39.22 -0.37 -0.79 16 8 C -0.17 -2.03 5.88 -104.96 -0.62 -2.65 16 9 C 0.56 8.56 7.73 -12.44 -0.10 8.46 16 10 O -0.54 -10.22 16.00 5.28 0.08 -10.14 16 11 N -0.71 -10.59 5.00 -54.79 -0.27 -10.87 16 12 C 0.16 2.88 2.20 -67.90 -0.15 2.73 16 13 H 0.09 1.76 7.57 -51.93 -0.39 1.37 16 14 C -0.14 -2.58 5.51 -26.61 -0.15 -2.73 16 15 C 0.15 3.20 6.52 -3.71 -0.02 3.18 16 16 N -0.58 -14.22 2.93 -172.31 -0.51 -14.73 16 17 C -0.24 -6.53 9.58 -15.06 -0.14 -6.68 16 18 H 0.06 1.73 7.88 -52.49 -0.41 1.32 16 19 C 0.00 -0.01 4.92 -17.43 -0.09 -0.10 16 20 N -0.91 -25.48 11.20 55.49 0.62 -24.86 16 21 Si 0.90 21.23 29.59 -169.99 -5.03 16.20 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 C 0.15 3.27 4.95 -3.71 -0.02 3.25 16 26 C 0.07 1.30 3.38 -26.61 -0.09 1.21 16 27 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 28 O -0.56 -9.62 12.08 -35.23 -0.43 -10.04 16 29 C -0.02 -0.23 9.58 -39.22 -0.38 -0.60 16 30 C -0.16 -1.55 9.97 -39.50 -0.39 -1.94 16 31 H 0.23 0.48 7.80 -54.10 -0.42 0.06 16 32 H 0.09 0.43 7.64 -51.93 -0.40 0.04 16 33 H 0.09 0.44 7.66 -51.93 -0.40 0.05 16 34 H 0.13 0.75 6.28 -52.48 -0.33 0.42 16 35 H 0.13 1.07 6.39 -52.48 -0.34 0.74 16 36 H 0.40 5.09 6.28 -40.82 -0.26 4.84 16 37 H 0.07 1.38 7.61 -51.93 -0.40 0.99 16 38 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.06 1.23 7.93 -51.93 -0.41 0.81 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 42 H 0.10 2.34 6.06 -51.93 -0.31 2.02 16 43 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.37 5.57 9.09 45.56 0.41 5.98 16 45 H 0.14 1.61 7.64 -52.49 -0.40 1.21 16 46 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 386.62 15.07 5.83 5.83 Total: -1.00 -33.04 386.62 -8.09 -41.13 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -5.30 Total: 9.30 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: -2.89 Total: 1.22 kcal Atomic # 7 Polarization: -50.30 SS G_CDS: -0.16 Total: -50.46 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: -0.53 Total: -23.23 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.03 Total: 16.20 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.04 -8.09 -41.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090619821.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.079 kcal (2) G-P(sol) polarization free energy of solvation -33.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds