Wall clock time and date at job start Wed Apr 1 2020 02:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09006 * 109.41560 * 2 1 4 4 O 1.42999 * 109.44424 * 119.91165 * 2 1 3 5 5 C 1.35980 * 116.71632 * 166.44109 * 4 2 1 6 6 C 1.38395 * 120.66500 * 147.15461 * 5 4 2 7 7 C 1.38316 * 119.87722 * 180.11268 * 6 5 4 8 8 C 1.38281 * 120.25399 * 0.02562 * 7 6 5 9 9 C 1.38282 * 120.20283 * 359.97438 * 8 7 6 10 10 C 1.38510 * 119.81572 * 0.02562 * 9 8 7 11 11 N 1.40206 * 120.74235 * 180.02562 * 10 9 8 12 12 C 1.46505 * 120.51370 * 15.50215 * 11 10 9 13 13 C 1.52999 * 109.47212 * 89.99586 * 12 11 10 14 14 C 1.50692 * 109.47014 * 180.02562 * 13 12 11 15 15 O 1.21292 * 120.00185 * 0.02562 * 14 13 12 16 16 N 1.34777 * 120.00071 * 180.02562 * 14 13 12 17 17 C 1.37096 * 120.00315 * 180.02562 * 16 14 13 18 18 H 1.08005 * 120.00223 * 131.61675 * 17 16 14 19 19 C 1.38947 * 119.99955 * 311.61747 * 17 16 14 20 20 N 1.31413 * 120.00084 * 167.08961 * 19 17 16 21 21 Si 1.86795 * 120.00163 * 347.08610 * 19 17 16 22 22 H 1.48505 * 109.46941 * 94.01126 * 21 19 17 23 23 H 1.48497 * 109.47576 * 214.01129 * 21 19 17 24 24 H 1.48500 * 109.47308 * 334.01480 * 21 19 17 25 25 C 1.46503 * 119.99736 * 0.02562 * 16 14 13 26 26 C 1.52999 * 117.49914 * 191.42208 * 25 16 14 27 27 C 1.52997 * 117.50197 * 122.76393 * 25 16 14 28 28 C 1.35091 * 118.98323 * 195.47985 * 11 10 9 29 29 O 1.21287 * 120.13785 * 181.65661 * 28 11 10 30 30 H 1.08998 * 109.46646 * 300.08603 * 1 2 3 31 31 H 1.09001 * 109.46905 * 60.08144 * 1 2 3 32 32 H 1.08992 * 109.47112 * 180.08841 * 1 2 3 33 33 H 1.08004 * 120.06373 * 0.11120 * 6 5 4 34 34 H 1.07998 * 119.86999 * 180.26989 * 7 6 5 35 35 H 1.08006 * 119.89567 * 180.02562 * 8 7 6 36 36 H 1.08000 * 120.09436 * 179.97438 * 9 8 7 37 37 H 1.09002 * 109.47133 * 210.00298 * 12 11 10 38 38 H 1.09008 * 109.46722 * 330.00119 * 12 11 10 39 39 H 1.08998 * 109.47176 * 300.00423 * 13 12 11 40 40 H 1.08997 * 109.46426 * 60.00338 * 13 12 11 41 41 H 0.96993 * 120.00285 * 179.97438 * 20 19 17 42 42 H 1.09003 * 115.55090 * 337.08561 * 25 16 14 43 43 H 1.09004 * 117.49829 * 0.02562 * 26 25 16 44 44 H 1.09002 * 117.50340 * 145.01579 * 26 25 16 45 45 H 1.09001 * 117.49978 * 214.98072 * 27 25 16 46 46 H 1.09005 * 117.49789 * 359.96944 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8924 1.0281 0.0000 4 8 2.0061 -0.6724 1.1688 5 6 3.3230 -1.0107 1.1858 6 6 4.0345 -1.0184 2.3728 7 6 5.3741 -1.3629 2.3709 8 6 6.0053 -1.6991 1.1874 9 6 5.3010 -1.6937 -0.0026 10 6 3.9593 -1.3497 -0.0072 11 7 3.2265 -1.3383 -1.2025 12 6 3.7471 -2.0013 -2.4006 13 6 3.2714 -3.4552 -2.4264 14 6 3.8075 -4.1374 -3.6586 15 8 4.5022 -3.5214 -4.4391 16 7 3.5151 -5.4319 -3.8933 17 6 4.0033 -6.0527 -5.0140 18 1 4.4825 -7.0171 -4.9317 19 6 3.8815 -5.4411 -6.2557 20 7 4.5605 -5.8993 -7.2832 21 14 2.7525 -3.9677 -6.4645 22 1 3.5351 -2.7168 -6.2970 23 1 2.1478 -3.9955 -7.8205 24 1 1.6769 -4.0193 -5.4418 25 6 2.6756 -6.1757 -2.9509 26 6 2.5967 -7.6942 -3.1214 27 6 1.3990 -6.8183 -3.4970 28 6 2.0325 -0.7069 -1.2322 29 8 1.3673 -0.7098 -2.2464 30 1 -0.3632 0.5152 0.8892 31 1 -0.3633 0.5126 -0.8907 32 1 -0.3633 -1.0276 0.0016 33 1 3.5448 -0.7558 3.2989 34 1 5.9282 -1.3730 3.2978 35 1 7.0515 -1.9676 1.1926 36 1 5.7958 -1.9563 -0.9260 37 1 3.3840 -1.4843 -3.2888 38 1 4.8368 -1.9758 -2.3854 39 1 3.6346 -3.9722 -1.5382 40 1 2.1818 -3.4807 -2.4416 41 1 4.4753 -5.4727 -8.1501 42 1 2.6457 -5.7812 -1.9352 43 1 3.1699 -8.1398 -3.9345 44 1 2.5146 -8.2985 -2.2180 45 1 0.5292 -6.8467 -2.8406 46 1 1.1834 -6.6872 -4.5574 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068230964.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:37:08 Heat of formation + Delta-G solvation = -23.348218 kcal Electronic energy + Delta-G solvation = -31046.955934 eV Core-core repulsion = 26904.000994 eV Total energy + Delta-G solvation = -4142.954940 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.78644 -39.29802 -38.99516 -37.93310 -36.56633 -35.87146 -33.00304 -32.38034 -31.80473 -31.15844 -30.45000 -29.02417 -26.37499 -24.57706 -23.53401 -23.36469 -22.13503 -21.78188 -21.28341 -19.57065 -19.42510 -19.11560 -17.46340 -17.35733 -16.85839 -16.33086 -15.67373 -15.53811 -15.45029 -14.90279 -14.84644 -14.67337 -14.41893 -14.18749 -13.97997 -13.47929 -13.37561 -13.24330 -13.01158 -12.83361 -12.65112 -12.45118 -12.34313 -12.12093 -12.03296 -11.52375 -11.43271 -11.35332 -11.09625 -10.95455 -10.74036 -10.52840 -10.31972 -10.10200 -9.99626 -9.98363 -9.68395 -8.89540 -8.67220 -8.57757 -8.00064 -7.44762 -6.21838 -4.07123 0.87036 1.04153 2.16668 2.36083 2.99681 3.26442 3.47809 3.48536 3.61865 3.71221 3.75697 4.30389 4.42400 4.46811 4.48148 4.59827 4.63267 4.75237 4.92982 5.02634 5.08654 5.15375 5.18049 5.22038 5.35895 5.37794 5.45072 5.46225 5.53650 5.63094 5.68930 5.73296 5.78623 5.83247 5.92088 6.01909 6.11015 6.18811 6.25974 6.27834 6.31104 6.43475 6.69516 6.76131 6.86902 7.17486 7.63431 7.81620 7.98300 8.71380 8.85639 9.37676 9.74558 10.83474 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.012774 B = 0.003725 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2191.490980 B = 7515.806021 C = 7985.598230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.079 3.921 3 H 0.101 0.899 4 O -0.302 6.302 5 C 0.074 3.926 6 C -0.110 4.110 7 C -0.116 4.116 8 C -0.108 4.108 9 C -0.123 4.123 10 C 0.102 3.898 11 N -0.550 5.550 12 C 0.124 3.876 13 C -0.150 4.150 14 C 0.466 3.534 15 O -0.544 6.544 16 N -0.436 5.436 17 C -0.343 4.343 18 H 0.096 0.904 19 C 0.092 3.908 20 N -0.870 5.870 21 Si 0.905 3.095 22 H -0.257 1.257 23 H -0.306 1.306 24 H -0.277 1.277 25 C 0.060 3.940 26 C -0.174 4.174 27 C -0.195 4.195 28 C 0.485 3.515 29 O -0.497 6.497 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.071 0.929 33 H 0.136 0.864 34 H 0.132 0.868 35 H 0.132 0.868 36 H 0.139 0.861 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.273 0.727 42 H 0.110 0.890 43 H 0.110 0.890 44 H 0.086 0.914 45 H 0.085 0.915 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.370 10.114 21.387 23.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.020 3.980 3 H 0.119 0.881 4 O -0.218 6.218 5 C 0.028 3.972 6 C -0.129 4.129 7 C -0.135 4.135 8 C -0.127 4.127 9 C -0.144 4.144 10 C 0.007 3.993 11 N -0.274 5.274 12 C 0.004 3.996 13 C -0.191 4.191 14 C 0.255 3.745 15 O -0.427 6.427 16 N -0.157 5.157 17 C -0.469 4.469 18 H 0.114 0.886 19 C -0.117 4.117 20 N -0.505 5.505 21 Si 0.735 3.265 22 H -0.183 1.183 23 H -0.235 1.235 24 H -0.202 1.202 25 C -0.045 4.045 26 C -0.212 4.212 27 C -0.234 4.234 28 C 0.273 3.727 29 O -0.370 6.370 30 H 0.097 0.903 31 H 0.110 0.890 32 H 0.090 0.910 33 H 0.154 0.846 34 H 0.150 0.850 35 H 0.150 0.850 36 H 0.156 0.844 37 H 0.117 0.883 38 H 0.115 0.885 39 H 0.104 0.896 40 H 0.103 0.897 41 H 0.082 0.918 42 H 0.127 0.873 43 H 0.128 0.872 44 H 0.104 0.896 45 H 0.104 0.896 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.517 10.394 20.265 23.045 hybrid contribution -0.492 0.510 -0.418 0.823 sum -4.009 10.905 19.847 22.998 Atomic orbital electron populations 1.21710 0.88964 1.04509 1.03960 1.22627 0.98031 0.96125 0.81209 0.88138 1.86220 1.21629 1.74287 1.39617 1.18614 0.83541 1.02304 0.92788 1.20491 0.93554 1.02646 0.96211 1.20979 0.93706 1.00253 0.98558 1.21027 1.00312 0.99737 0.91596 1.20877 0.91335 1.02181 0.99979 1.18193 0.92816 1.03271 0.84989 1.45917 1.19123 1.51554 1.10813 1.21514 1.00231 0.92190 0.85707 1.21920 1.02624 0.95537 0.99058 1.20058 0.83283 0.83888 0.87297 1.90553 1.40153 1.63775 1.48201 1.43112 1.42910 1.08529 1.21126 1.18730 1.38644 1.06579 0.82905 0.88645 1.25339 0.94561 0.97002 0.94768 1.69694 1.37916 1.41401 1.01468 0.86411 0.79723 0.84568 0.75785 1.18288 1.23457 1.20194 1.21872 0.95636 0.93240 0.93786 1.23128 1.02067 0.92746 1.03214 1.23229 0.91836 1.05796 1.02515 1.21519 0.80740 0.79562 0.90918 1.90788 1.54720 1.58422 1.33078 0.90287 0.88986 0.90959 0.84583 0.85024 0.85014 0.84368 0.88267 0.88461 0.89607 0.89683 0.91760 0.87262 0.87219 0.89552 0.89634 0.88386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.24 9.15 37.16 0.34 -0.90 16 2 C 0.08 0.89 3.68 -27.89 -0.10 0.78 16 3 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 4 O -0.30 -3.53 10.09 -19.68 -0.20 -3.73 16 5 C 0.07 0.86 6.44 -39.09 -0.25 0.61 16 6 C -0.11 -1.00 10.00 -39.49 -0.39 -1.40 16 7 C -0.12 -0.93 10.04 -39.54 -0.40 -1.33 16 8 C -0.11 -0.97 10.04 -39.55 -0.40 -1.37 16 9 C -0.12 -1.41 9.36 -39.46 -0.37 -1.77 16 10 C 0.10 1.31 6.39 -83.50 -0.53 0.78 16 11 N -0.55 -8.19 2.72 -113.23 -0.31 -8.50 16 12 C 0.12 2.14 4.49 -4.04 -0.02 2.12 16 13 C -0.15 -2.77 4.54 -27.89 -0.13 -2.90 16 14 C 0.47 11.03 5.81 -10.99 -0.06 10.97 16 15 O -0.54 -14.79 11.93 5.55 0.07 -14.72 16 16 N -0.44 -10.53 2.44 -107.73 -0.26 -10.79 16 17 C -0.34 -9.59 8.49 -14.93 -0.13 -9.72 16 18 H 0.10 2.80 7.07 -52.48 -0.37 2.42 16 19 C 0.09 2.72 5.01 -17.47 -0.09 2.64 16 20 N -0.87 -26.65 13.96 55.50 0.77 -25.87 16 21 Si 0.91 24.83 24.72 -169.99 -4.20 20.63 16 22 H -0.26 -7.37 6.47 56.52 0.37 -7.00 16 23 H -0.31 -8.22 7.11 56.52 0.40 -7.82 16 24 H -0.28 -7.44 7.10 56.52 0.40 -7.04 16 25 C 0.06 1.17 6.05 -67.93 -0.41 0.75 16 26 C -0.17 -3.05 9.85 -26.70 -0.26 -3.31 16 27 C -0.20 -3.52 10.22 -26.70 -0.27 -3.79 16 28 C 0.49 7.27 7.37 -10.85 -0.08 7.19 16 29 O -0.50 -8.99 15.83 5.55 0.09 -8.90 16 30 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.09 0.84 7.85 -51.93 -0.41 0.44 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.14 0.96 8.06 -52.48 -0.42 0.54 16 34 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16 35 H 0.13 0.91 8.06 -52.48 -0.42 0.48 16 36 H 0.14 1.60 6.12 -52.49 -0.32 1.27 16 37 H 0.10 1.95 7.45 -51.93 -0.39 1.56 16 38 H 0.10 1.56 5.92 -51.92 -0.31 1.26 16 39 H 0.09 1.38 7.59 -51.93 -0.39 0.99 16 40 H 0.08 1.60 8.11 -51.93 -0.42 1.18 16 41 H 0.27 7.90 8.31 -40.82 -0.34 7.56 16 42 H 0.11 1.79 6.73 -51.93 -0.35 1.44 16 43 H 0.11 2.18 6.57 -51.93 -0.34 1.84 16 44 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 45 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 46 H 0.10 2.02 8.14 -51.93 -0.42 1.60 16 LS Contribution 374.02 15.07 5.64 5.64 Total: -1.00 -35.08 374.02 -8.24 -43.32 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -6.28 Total: 3.59 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: -3.56 Total: -0.66 kcal Atomic # 7 Polarization: -45.37 SS G_CDS: 0.20 Total: -45.17 kcal Atomic # 8 Polarization: -27.31 SS G_CDS: -0.04 Total: -27.35 kcal Atomic # 14 Polarization: 24.83 SS G_CDS: -4.20 Total: 20.63 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.08 -8.24 -43.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068230964.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.970 kcal (2) G-P(sol) polarization free energy of solvation -35.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds