Wall clock time and date at job start Wed Apr 1 2020 02:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09006 * 109.41560 * 2 1 4 4 O 1.42999 * 109.44424 * 119.91165 * 2 1 3 5 5 C 1.35980 * 116.71632 * 166.44109 * 4 2 1 6 6 C 1.38395 * 120.66500 * 147.15461 * 5 4 2 7 7 C 1.38316 * 119.87722 * 180.11268 * 6 5 4 8 8 C 1.38281 * 120.25399 * 0.02562 * 7 6 5 9 9 C 1.38282 * 120.20283 * 359.97438 * 8 7 6 10 10 C 1.38510 * 119.81572 * 0.02562 * 9 8 7 11 11 N 1.40206 * 120.74235 * 180.02562 * 10 9 8 12 12 C 1.46505 * 120.51370 * 15.50215 * 11 10 9 13 13 C 1.52999 * 109.47212 * 89.99586 * 12 11 10 14 14 C 1.50692 * 109.47014 * 180.02562 * 13 12 11 15 15 O 1.21292 * 120.00185 * 0.02562 * 14 13 12 16 16 N 1.34777 * 120.00071 * 180.02562 * 14 13 12 17 17 C 1.37096 * 120.00315 * 180.02562 * 16 14 13 18 18 H 1.08005 * 120.00223 * 131.61675 * 17 16 14 19 19 C 1.38947 * 119.99955 * 311.61747 * 17 16 14 20 20 N 1.31413 * 120.00084 * 167.08961 * 19 17 16 21 21 Si 1.86795 * 120.00163 * 347.08610 * 19 17 16 22 22 H 1.48505 * 109.46941 * 94.01126 * 21 19 17 23 23 H 1.48497 * 109.47576 * 214.01129 * 21 19 17 24 24 H 1.48500 * 109.47308 * 334.01480 * 21 19 17 25 25 C 1.46503 * 119.99736 * 0.02562 * 16 14 13 26 26 C 1.52999 * 117.49914 * 191.42208 * 25 16 14 27 27 C 1.52997 * 117.50197 * 122.76393 * 25 16 14 28 28 C 1.35091 * 118.98323 * 195.47985 * 11 10 9 29 29 O 1.21287 * 120.13785 * 181.65661 * 28 11 10 30 30 H 1.08998 * 109.46646 * 300.08603 * 1 2 3 31 31 H 1.09001 * 109.46905 * 60.08144 * 1 2 3 32 32 H 1.08992 * 109.47112 * 180.08841 * 1 2 3 33 33 H 1.08004 * 120.06373 * 0.11120 * 6 5 4 34 34 H 1.07998 * 119.86999 * 180.26989 * 7 6 5 35 35 H 1.08006 * 119.89567 * 180.02562 * 8 7 6 36 36 H 1.08000 * 120.09436 * 179.97438 * 9 8 7 37 37 H 1.09002 * 109.47133 * 210.00298 * 12 11 10 38 38 H 1.09008 * 109.46722 * 330.00119 * 12 11 10 39 39 H 1.08998 * 109.47176 * 300.00423 * 13 12 11 40 40 H 1.08997 * 109.46426 * 60.00338 * 13 12 11 41 41 H 0.96993 * 120.00285 * 179.97438 * 20 19 17 42 42 H 1.09003 * 115.55090 * 337.08561 * 25 16 14 43 43 H 1.09004 * 117.49829 * 0.02562 * 26 25 16 44 44 H 1.09002 * 117.50340 * 145.01579 * 26 25 16 45 45 H 1.09001 * 117.49978 * 214.98072 * 27 25 16 46 46 H 1.09005 * 117.49789 * 359.96944 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8924 1.0281 0.0000 4 8 2.0061 -0.6724 1.1688 5 6 3.3230 -1.0107 1.1858 6 6 4.0345 -1.0184 2.3728 7 6 5.3741 -1.3629 2.3709 8 6 6.0053 -1.6991 1.1874 9 6 5.3010 -1.6937 -0.0026 10 6 3.9593 -1.3497 -0.0072 11 7 3.2265 -1.3383 -1.2025 12 6 3.7471 -2.0013 -2.4006 13 6 3.2714 -3.4552 -2.4264 14 6 3.8075 -4.1374 -3.6586 15 8 4.5022 -3.5214 -4.4391 16 7 3.5151 -5.4319 -3.8933 17 6 4.0033 -6.0527 -5.0140 18 1 4.4825 -7.0171 -4.9317 19 6 3.8815 -5.4411 -6.2557 20 7 4.5605 -5.8993 -7.2832 21 14 2.7525 -3.9677 -6.4645 22 1 3.5351 -2.7168 -6.2970 23 1 2.1478 -3.9955 -7.8205 24 1 1.6769 -4.0193 -5.4418 25 6 2.6756 -6.1757 -2.9509 26 6 2.5967 -7.6942 -3.1214 27 6 1.3990 -6.8183 -3.4970 28 6 2.0325 -0.7069 -1.2322 29 8 1.3673 -0.7098 -2.2464 30 1 -0.3632 0.5152 0.8892 31 1 -0.3633 0.5126 -0.8907 32 1 -0.3633 -1.0276 0.0016 33 1 3.5448 -0.7558 3.2989 34 1 5.9282 -1.3730 3.2978 35 1 7.0515 -1.9676 1.1926 36 1 5.7958 -1.9563 -0.9260 37 1 3.3840 -1.4843 -3.2888 38 1 4.8368 -1.9758 -2.3854 39 1 3.6346 -3.9722 -1.5382 40 1 2.1818 -3.4807 -2.4416 41 1 4.4753 -5.4727 -8.1501 42 1 2.6457 -5.7812 -1.9352 43 1 3.1699 -8.1398 -3.9345 44 1 2.5146 -8.2985 -2.2180 45 1 0.5292 -6.8467 -2.8406 46 1 1.1834 -6.6872 -4.5574 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068230964.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:37:07 Heat of formation + Delta-G solvation = -45.892743 kcal Electronic energy + Delta-G solvation = -31047.933538 eV Core-core repulsion = 26904.000994 eV Total energy + Delta-G solvation = -4143.932544 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.76037 -41.06380 -40.05095 -38.84754 -38.17821 -37.02710 -35.03194 -33.63032 -33.21097 -32.73357 -31.24959 -29.93486 -27.94392 -26.11839 -24.48296 -24.36208 -23.46416 -23.11173 -22.77013 -21.09429 -20.45509 -20.30934 -19.09473 -18.30190 -18.26192 -17.79927 -17.43309 -16.78890 -16.53424 -16.39710 -15.90793 -15.80938 -15.58545 -15.46793 -15.27010 -15.07406 -14.82591 -14.72194 -14.38185 -14.15830 -13.93873 -13.62863 -13.52438 -13.19834 -13.17448 -12.91978 -12.82670 -12.66004 -12.34106 -12.28433 -12.20091 -12.13593 -12.08805 -11.72530 -11.57485 -11.30381 -11.04865 -10.92171 -10.54514 -9.66793 -9.39295 -8.93073 -8.50241 -6.32149 0.03416 0.28951 1.09964 1.14909 1.23351 1.28131 1.36344 1.75882 2.14488 2.26629 2.54585 2.74092 2.82147 2.87488 3.17292 3.55865 3.64226 3.70085 3.73203 3.80821 3.84903 4.00541 4.01237 4.11890 4.19123 4.24299 4.31269 4.35638 4.48297 4.50850 4.63885 4.69761 4.73245 4.80145 4.83402 4.91370 4.98542 5.10974 5.18162 5.26669 5.30373 5.41442 5.54530 5.63498 5.70105 5.82051 5.82707 6.27085 6.53723 6.64184 6.81731 7.22410 7.74234 8.58748 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.012774 B = 0.003725 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2191.490980 B = 7515.806021 C = 7985.598230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.086 3.914 3 H 0.123 0.877 4 O -0.304 6.304 5 C 0.061 3.939 6 C -0.106 4.106 7 C -0.100 4.100 8 C -0.107 4.107 9 C -0.136 4.136 10 C 0.073 3.927 11 N -0.550 5.550 12 C 0.132 3.868 13 C -0.130 4.130 14 C 0.459 3.541 15 O -0.586 6.586 16 N -0.452 5.452 17 C -0.329 4.329 18 H 0.075 0.925 19 C 0.050 3.950 20 N -0.910 5.910 21 Si 0.948 3.052 22 H -0.281 1.281 23 H -0.300 1.300 24 H -0.271 1.271 25 C 0.039 3.961 26 C -0.160 4.160 27 C -0.190 4.190 28 C 0.476 3.524 29 O -0.541 6.541 30 H 0.108 0.892 31 H 0.089 0.911 32 H 0.060 0.940 33 H 0.162 0.838 34 H 0.169 0.831 35 H 0.154 0.846 36 H 0.127 0.873 37 H 0.065 0.935 38 H 0.103 0.897 39 H 0.117 0.883 40 H 0.085 0.915 41 H 0.273 0.727 42 H 0.148 0.852 43 H 0.078 0.922 44 H 0.131 0.869 45 H 0.127 0.873 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.040 10.536 26.307 28.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.027 3.973 3 H 0.141 0.859 4 O -0.219 6.219 5 C 0.015 3.985 6 C -0.124 4.124 7 C -0.119 4.119 8 C -0.125 4.125 9 C -0.156 4.156 10 C -0.021 4.021 11 N -0.274 5.274 12 C 0.010 3.990 13 C -0.171 4.171 14 C 0.250 3.750 15 O -0.471 6.471 16 N -0.172 5.172 17 C -0.456 4.456 18 H 0.093 0.907 19 C -0.154 4.154 20 N -0.548 5.548 21 Si 0.779 3.221 22 H -0.208 1.208 23 H -0.228 1.228 24 H -0.196 1.196 25 C -0.066 4.066 26 C -0.198 4.198 27 C -0.228 4.228 28 C 0.265 3.735 29 O -0.417 6.417 30 H 0.126 0.874 31 H 0.107 0.893 32 H 0.079 0.921 33 H 0.179 0.821 34 H 0.186 0.814 35 H 0.172 0.828 36 H 0.145 0.855 37 H 0.084 0.916 38 H 0.121 0.879 39 H 0.135 0.865 40 H 0.103 0.897 41 H 0.083 0.917 42 H 0.165 0.835 43 H 0.096 0.904 44 H 0.149 0.851 45 H 0.145 0.855 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.197 10.795 25.246 27.776 hybrid contribution -0.157 0.352 -1.761 1.803 sum -4.354 11.147 23.485 26.358 Atomic orbital electron populations 1.21738 0.87573 1.04187 1.05229 1.22760 0.98972 0.96383 0.79225 0.85929 1.86215 1.21912 1.74525 1.39227 1.18913 0.83634 1.02801 0.93112 1.20881 0.93940 1.01479 0.96126 1.21430 0.93353 0.97610 0.99467 1.21353 1.01316 0.98840 0.91027 1.20968 0.91120 1.02812 1.00744 1.18415 0.93408 1.05799 0.84437 1.45841 1.19452 1.51311 1.10816 1.21179 1.00459 0.91327 0.86010 1.21766 1.02221 0.95950 0.97198 1.20929 0.82262 0.83605 0.88198 1.90524 1.41892 1.64797 1.49897 1.43305 1.43887 1.09075 1.20955 1.18631 1.37492 1.05480 0.83992 0.90723 1.25830 0.95778 0.98592 0.95183 1.69754 1.40028 1.42990 1.02004 0.85724 0.78562 0.81846 0.75998 1.20831 1.22843 1.19590 1.22269 0.95921 0.94128 0.94232 1.23163 1.00789 0.91872 1.03931 1.23280 0.92984 1.05125 1.01427 1.22371 0.80282 0.79123 0.91722 1.90759 1.55953 1.60161 1.34877 0.87377 0.89269 0.92090 0.82076 0.81401 0.82790 0.85481 0.91632 0.87934 0.86531 0.89651 0.91704 0.83492 0.90372 0.85058 0.85491 0.91694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.18 9.15 71.98 0.66 -1.52 16 2 C 0.09 1.77 3.68 29.85 0.11 1.88 16 3 H 0.12 1.99 8.14 -2.38 -0.02 1.97 16 4 O -0.30 -6.30 10.09 -93.33 -0.94 -7.24 16 5 C 0.06 1.26 6.44 22.59 0.15 1.40 16 6 C -0.11 -1.47 10.00 22.33 0.22 -1.25 16 7 C -0.10 -1.12 10.04 22.30 0.22 -0.90 16 8 C -0.11 -1.56 10.04 22.29 0.22 -1.33 16 9 C -0.14 -2.88 9.36 22.35 0.21 -2.67 16 10 C 0.07 1.75 6.39 38.14 0.24 2.00 16 11 N -0.55 -16.29 2.72 -630.37 -1.71 -18.00 16 12 C 0.13 4.66 4.49 86.38 0.39 5.05 16 13 C -0.13 -4.74 4.54 29.85 0.14 -4.60 16 14 C 0.46 22.01 5.81 87.65 0.51 22.52 16 15 O -0.59 -32.96 11.93 -3.07 -0.04 -33.00 16 16 N -0.45 -21.86 2.44 -613.14 -1.49 -23.36 16 17 C -0.33 -18.94 8.49 84.04 0.71 -18.22 16 18 H 0.08 4.55 7.07 -2.91 -0.02 4.53 16 19 C 0.05 3.09 5.01 84.93 0.43 3.51 16 20 N -0.91 -58.01 13.96 21.66 0.30 -57.70 16 21 Si 0.95 53.32 24.72 68.60 1.70 55.02 16 22 H -0.28 -16.80 6.47 99.48 0.64 -16.15 16 23 H -0.30 -16.28 7.11 99.48 0.71 -15.57 16 24 H -0.27 -14.70 7.10 99.48 0.71 -14.00 16 25 C 0.04 1.41 6.05 44.99 0.27 1.69 16 26 C -0.16 -5.26 9.85 30.62 0.30 -4.96 16 27 C -0.19 -6.44 10.22 30.62 0.31 -6.13 16 28 C 0.48 14.21 7.37 87.60 0.65 14.86 16 29 O -0.54 -20.13 15.83 -3.05 -0.05 -20.18 16 30 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.09 1.55 7.85 -2.39 -0.02 1.53 16 32 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.16 1.44 8.06 -2.91 -0.02 1.41 16 34 H 0.17 0.72 8.06 -2.91 -0.02 0.70 16 35 H 0.15 1.52 8.06 -2.91 -0.02 1.50 16 36 H 0.13 2.90 6.12 -2.91 -0.02 2.88 16 37 H 0.07 2.74 7.45 -2.39 -0.02 2.72 16 38 H 0.10 3.42 5.92 -2.38 -0.01 3.41 16 39 H 0.12 3.50 7.59 -2.39 -0.02 3.48 16 40 H 0.09 3.14 8.11 -2.39 -0.02 3.12 16 41 H 0.27 16.53 8.31 -92.71 -0.77 15.76 16 42 H 0.15 4.24 6.73 -2.39 -0.02 4.23 16 43 H 0.08 3.10 6.57 -2.38 -0.02 3.09 16 44 H 0.13 3.15 8.14 -2.39 -0.02 3.13 16 45 H 0.13 3.27 8.14 -2.39 -0.02 3.25 16 46 H 0.06 2.66 8.14 -2.38 -0.02 2.64 16 Total: -1.00 -81.67 374.02 4.45 -77.23 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: 0.94 Total: 15.92 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: 5.74 Total: 11.31 kcal Atomic # 7 Polarization: -96.15 SS G_CDS: -2.90 Total: -99.06 kcal Atomic # 8 Polarization: -59.39 SS G_CDS: -1.03 Total: -60.42 kcal Atomic # 14 Polarization: 53.32 SS G_CDS: 1.70 Total: 55.02 kcal Total: -81.67 4.45 -77.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068230964.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.333 kcal (2) G-P(sol) polarization free energy of solvation -81.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds