Wall clock time and date at job start Wed Apr 1 2020 03:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21285 * 119.99644 * 2 1 4 4 N 1.34775 * 120.00551 * 179.97438 * 2 1 3 5 5 C 1.46492 * 120.00507 * 179.97438 * 4 2 1 6 6 H 1.09005 * 109.47637 * 179.97438 * 5 4 2 7 7 C 1.53001 * 109.47194 * 60.00167 * 5 4 2 8 8 C 1.50701 * 109.47257 * 64.99793 * 7 5 4 9 9 C 1.34244 * 126.50322 * 264.69640 * 8 7 5 10 10 N 1.36833 * 109.92896 * 179.83059 * 9 8 7 11 11 H 0.96993 * 125.06365 * 180.17814 * 10 9 8 12 12 C 1.37688 * 109.87151 * 0.44317 * 10 9 8 13 13 C 1.39129 * 133.50421 * 179.71776 * 12 10 9 14 14 C 1.37755 * 119.77864 * 180.02562 * 13 12 10 15 15 C 1.38838 * 120.66268 * 0.02562 * 14 13 12 16 16 C 1.36618 * 120.53073 * 359.97438 * 15 14 13 17 17 C 1.39637 * 119.76289 * 0.02562 * 16 15 14 18 18 C 1.50696 * 109.47528 * 300.00405 * 5 4 2 19 19 O 1.20833 * 119.99655 * 19.99277 * 18 5 4 20 20 O 1.34222 * 120.00432 * 200.27544 * 18 5 4 21 21 C 1.45201 * 117.00137 * 179.71953 * 20 18 5 22 22 H 1.08997 * 109.47182 * 30.00237 * 21 20 18 23 23 C 1.53002 * 109.47379 * 269.99835 * 21 20 18 24 24 C 1.50706 * 109.47038 * 149.99875 * 21 20 18 25 25 H 1.08002 * 119.99636 * 0.02562 * 24 21 20 26 26 C 1.37873 * 119.99798 * 179.97438 * 24 21 20 27 27 N 1.31508 * 120.00508 * 0.02562 * 26 24 21 28 28 Si 1.86809 * 119.99737 * 180.02562 * 26 24 21 29 29 H 1.48499 * 109.47155 * 60.00373 * 28 26 24 30 30 H 1.48496 * 109.47192 * 180.02562 * 28 26 24 31 31 H 1.48502 * 109.47113 * 300.00264 * 28 26 24 32 32 H 1.09005 * 109.46635 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.46693 * 300.00110 * 1 2 3 34 34 H 1.08994 * 109.46885 * 60.00441 * 1 2 3 35 35 H 0.97002 * 119.99647 * 359.97438 * 4 2 1 36 36 H 1.09002 * 109.47489 * 184.99971 * 7 5 4 37 37 H 1.09001 * 109.47192 * 305.00546 * 7 5 4 38 38 H 1.07997 * 125.03124 * 359.97094 * 9 8 7 39 39 H 1.08002 * 120.11457 * 0.04190 * 13 12 10 40 40 H 1.07993 * 119.66540 * 180.02562 * 14 13 12 41 41 H 1.08000 * 119.73336 * 179.97438 * 15 14 13 42 42 H 1.07998 * 120.11924 * 180.02562 * 16 15 14 43 43 H 1.08999 * 109.47253 * 180.02562 * 23 21 20 44 44 H 1.09006 * 109.47031 * 300.00357 * 23 21 20 45 45 H 1.09000 * 109.46742 * 59.99858 * 23 21 20 46 46 H 0.97003 * 120.00681 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1671 0.0005 5 6 3.6459 -1.1671 0.0000 6 1 4.0094 -2.1948 0.0010 7 6 4.1564 -0.4451 1.2485 8 6 3.7582 -1.2225 2.4766 9 6 2.6737 -1.0108 3.2389 10 7 2.6411 -1.9154 4.2651 11 1 1.9512 -1.9618 4.9453 12 6 3.7367 -2.7461 4.1916 13 6 4.1856 -3.8101 4.9675 14 6 5.3522 -4.4597 4.6286 15 6 6.0868 -4.0632 3.5192 16 6 5.6644 -3.0210 2.7435 17 6 4.4847 -2.3483 3.0688 18 6 4.1479 -0.4575 -1.2311 19 8 3.4219 0.3007 -1.8295 20 8 5.3994 -0.6719 -1.6660 21 6 5.8130 0.0408 -2.8615 22 1 5.2820 0.9909 -2.9201 23 6 5.4879 -0.8023 -4.0962 24 6 7.2970 0.2976 -2.8051 25 1 7.8718 -0.0415 -1.9559 26 6 7.9210 0.9643 -3.8381 27 7 7.2212 1.3767 -4.8724 28 14 9.7606 1.2819 -3.7686 29 1 10.4837 -0.0127 -3.6885 30 1 10.1836 2.0109 -4.9911 31 1 10.0766 2.1003 -2.5704 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3632 0.5138 0.8900 34 1 -0.3633 0.5137 -0.8900 35 1 1.6960 -2.0072 0.0013 36 1 5.2427 -0.3668 1.2045 37 1 3.7218 0.5535 1.2940 38 1 1.9352 -0.2419 3.0665 39 1 3.6213 -4.1260 5.8325 40 1 5.6987 -5.2857 5.2319 41 1 6.9995 -4.5829 3.2675 42 1 6.2408 -2.7184 1.8818 43 1 5.7988 -0.2674 -4.9936 44 1 6.0190 -1.7524 -4.0375 45 1 4.4146 -0.9880 -4.1369 46 1 7.6601 1.8461 -5.5990 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113687648.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:29 Heat of formation + Delta-G solvation = -65.131086 kcal Electronic energy + Delta-G solvation = -30380.989169 eV Core-core repulsion = 26236.222388 eV Total energy + Delta-G solvation = -4144.766781 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.40991 -40.13333 -38.61356 -36.99411 -35.69783 -34.91769 -33.18101 -32.82540 -30.99764 -29.61932 -29.49104 -29.24475 -27.76120 -25.27222 -24.50694 -22.91041 -21.85485 -21.78976 -20.65158 -19.47318 -19.06000 -17.87679 -17.41461 -16.89827 -16.40810 -16.22557 -15.78072 -15.50255 -15.19870 -14.82433 -14.67331 -14.53081 -14.22326 -14.03218 -13.85825 -13.51124 -13.07616 -12.94806 -12.68750 -12.50291 -12.29197 -12.09920 -11.94507 -11.84897 -11.74169 -11.56312 -11.30278 -11.10551 -10.98293 -10.81359 -10.77138 -10.31143 -10.22213 -9.81181 -9.70399 -9.46484 -9.37240 -8.86331 -8.73774 -8.41310 -8.30214 -7.70258 -6.11445 -4.18069 1.05439 1.55848 2.54925 2.83949 2.98320 3.14811 3.30519 3.31333 3.34793 3.39102 3.83815 3.90278 4.39381 4.64696 4.71571 4.90491 4.93243 5.05668 5.11325 5.18612 5.21387 5.31966 5.33190 5.35172 5.43248 5.51575 5.68184 5.71983 5.79657 5.89886 5.92461 6.13116 6.22968 6.41325 6.54831 6.56654 6.68952 6.71164 6.74552 6.94454 6.99154 7.09449 7.26926 7.39824 7.64494 7.67384 7.81152 8.03508 8.22593 8.49019 8.76150 8.99441 9.47169 10.96014 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.010200 B = 0.003465 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2744.366700 B = 8079.559697 C =10182.991419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.511 3.489 3 O -0.512 6.512 4 N -0.718 5.718 5 C 0.167 3.833 6 H 0.114 0.886 7 C -0.059 4.059 8 C -0.151 4.151 9 C 0.055 3.945 10 N -0.597 5.597 11 H 0.413 0.587 12 C 0.095 3.905 13 C -0.136 4.136 14 C -0.100 4.100 15 C -0.149 4.149 16 C -0.065 4.065 17 C -0.101 4.101 18 C 0.438 3.562 19 O -0.492 6.492 20 O -0.359 6.359 21 C 0.218 3.782 22 H 0.046 0.954 23 C -0.153 4.153 24 C -0.519 4.519 25 H 0.068 0.932 26 C 0.062 3.938 27 N -0.890 5.890 28 Si 0.911 3.089 29 H -0.274 1.274 30 H -0.286 1.286 31 H -0.274 1.274 32 H 0.070 0.930 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.402 0.598 36 H 0.091 0.909 37 H 0.098 0.902 38 H 0.164 0.836 39 H 0.115 0.885 40 H 0.122 0.878 41 H 0.122 0.878 42 H 0.128 0.872 43 H 0.098 0.902 44 H 0.036 0.964 45 H 0.013 0.987 46 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.309 -11.617 18.974 25.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.298 3.702 3 O -0.385 6.385 4 N -0.372 5.372 5 C 0.060 3.940 6 H 0.132 0.868 7 C -0.097 4.097 8 C -0.158 4.158 9 C -0.071 4.071 10 N -0.200 5.200 11 H 0.249 0.751 12 C -0.012 4.012 13 C -0.157 4.157 14 C -0.119 4.119 15 C -0.169 4.169 16 C -0.083 4.083 17 C -0.106 4.106 18 C 0.277 3.723 19 O -0.380 6.380 20 O -0.275 6.275 21 C 0.165 3.835 22 H 0.063 0.937 23 C -0.211 4.211 24 C -0.557 4.557 25 H 0.087 0.913 26 C -0.140 4.140 27 N -0.528 5.528 28 Si 0.738 3.262 29 H -0.199 1.199 30 H -0.211 1.211 31 H -0.200 1.200 32 H 0.089 0.911 33 H 0.107 0.893 34 H 0.112 0.888 35 H 0.236 0.764 36 H 0.110 0.890 37 H 0.116 0.884 38 H 0.182 0.818 39 H 0.133 0.867 40 H 0.139 0.861 41 H 0.140 0.860 42 H 0.146 0.854 43 H 0.117 0.883 44 H 0.055 0.945 45 H 0.033 0.967 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.140 -10.451 18.627 24.568 hybrid contribution 0.239 -0.243 0.104 0.357 sum -11.901 -10.694 18.731 24.634 Atomic orbital electron populations 1.21818 0.92375 1.03599 1.04970 1.20617 0.90146 0.83716 0.75750 1.90753 1.70024 1.31089 1.46677 1.45762 1.05486 1.08996 1.76955 1.20358 0.80917 1.01151 0.91605 0.86813 1.20251 1.02440 0.99127 0.87925 1.20096 0.96728 0.99469 0.99518 1.21555 1.00109 0.95605 0.89816 1.41695 1.22422 1.28958 1.26959 0.75070 1.18247 0.89594 0.95173 0.98183 1.19969 0.98624 0.96591 1.00526 1.20795 0.94341 0.99411 0.97347 1.20655 1.00922 0.98806 0.96475 1.20453 0.94234 0.94402 0.99251 1.19139 0.96649 0.98283 0.96536 1.23504 0.82185 0.80885 0.85718 1.90637 1.57007 1.33663 1.56645 1.86457 1.28660 1.65645 1.46738 1.20571 0.95174 0.90929 0.76822 0.93661 1.22150 0.96585 0.99921 1.02431 1.20999 0.91322 1.37399 1.05977 0.91346 1.24881 0.99130 0.95084 0.94890 1.69891 1.36021 1.38305 1.08615 0.86349 0.83823 0.78523 0.77524 1.19944 1.21103 1.19962 0.91069 0.89307 0.88842 0.76403 0.89017 0.88361 0.81833 0.86653 0.86050 0.86020 0.85412 0.88338 0.94517 0.96748 0.92425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.53 10.39 36.01 0.37 -1.16 16 2 C 0.51 7.23 6.70 -10.99 -0.07 7.16 16 3 O -0.51 -9.92 12.96 -17.92 -0.23 -10.16 16 4 N -0.72 -9.00 4.91 -54.94 -0.27 -9.27 16 5 C 0.17 2.57 3.11 -69.09 -0.21 2.35 16 6 H 0.11 1.52 8.14 -51.93 -0.42 1.10 16 7 C -0.06 -0.87 5.08 -27.88 -0.14 -1.02 16 8 C -0.15 -1.87 5.30 -102.71 -0.54 -2.42 16 9 C 0.05 0.55 11.73 -16.73 -0.20 0.35 16 10 N -0.60 -5.14 6.07 -10.65 -0.06 -5.21 16 11 H 0.41 2.22 8.96 -40.82 -0.37 1.85 16 12 C 0.09 1.02 7.28 -83.99 -0.61 0.41 16 13 C -0.14 -1.28 10.08 -39.43 -0.40 -1.68 16 14 C -0.10 -0.93 10.01 -39.54 -0.40 -1.32 16 15 C -0.15 -1.56 9.97 -39.94 -0.40 -1.95 16 16 C -0.06 -0.78 10.05 -39.64 -0.40 -1.18 16 17 C -0.10 -1.26 6.35 -105.14 -0.67 -1.93 16 18 C 0.44 9.46 6.92 36.00 0.25 9.70 16 19 O -0.49 -12.26 12.91 -26.53 -0.34 -12.60 16 20 O -0.36 -8.71 9.86 -39.24 -0.39 -9.10 16 21 C 0.22 6.03 2.56 -27.88 -0.07 5.96 16 22 H 0.05 1.41 7.16 -51.93 -0.37 1.04 16 23 C -0.15 -3.99 9.33 37.16 0.35 -3.64 16 24 C -0.52 -14.90 8.90 -34.44 -0.31 -15.21 16 25 H 0.07 1.92 7.81 -52.49 -0.41 1.51 16 26 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 27 N -0.89 -25.97 11.32 55.43 0.63 -25.34 16 28 Si 0.91 21.52 29.54 -169.99 -5.02 16.50 16 29 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 30 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 31 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 32 H 0.07 0.44 7.91 -51.93 -0.41 0.03 16 33 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.40 3.58 8.67 -40.82 -0.35 3.23 16 36 H 0.09 1.45 8.14 -51.93 -0.42 1.02 16 37 H 0.10 1.65 6.04 -51.93 -0.31 1.34 16 38 H 0.16 1.38 8.06 -52.49 -0.42 0.96 16 39 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 40 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 41 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 42 H 0.13 1.53 8.06 -52.49 -0.42 1.10 16 43 H 0.10 2.74 6.07 -51.93 -0.32 2.42 16 44 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 45 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 46 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 388.02 15.07 5.85 5.85 Total: -1.00 -36.56 388.02 -9.71 -46.27 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -6.33 Total: 6.97 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: -3.54 Total: -3.92 kcal Atomic # 7 Polarization: -40.10 SS G_CDS: 0.29 Total: -39.81 kcal Atomic # 8 Polarization: -30.89 SS G_CDS: -0.96 Total: -31.85 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -36.56 -9.71 -46.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113687648.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.861 kcal (2) G-P(sol) polarization free energy of solvation -36.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds