Wall clock time and date at job start Wed Apr 1 2020 03:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.47255 * 2 1 4 4 C 1.50704 * 109.47045 * 119.99653 * 2 1 3 5 5 H 1.07997 * 120.00170 * 119.99490 * 4 2 1 6 6 C 1.37879 * 119.99967 * 300.00180 * 4 2 1 7 7 N 1.31519 * 120.00008 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99861 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47187 * 90.00147 * 8 6 4 10 10 H 1.48510 * 109.46906 * 209.99768 * 8 6 4 11 11 H 1.48493 * 109.47200 * 329.99687 * 8 6 4 12 12 O 1.45200 * 109.47351 * 239.99674 * 2 1 3 13 13 C 1.34228 * 117.00094 * 90.00103 * 12 2 1 14 14 O 1.20823 * 119.99973 * 359.97438 * 13 12 2 15 15 C 1.50699 * 120.00022 * 180.02562 * 13 12 2 16 16 C 1.52997 * 109.47256 * 179.97438 * 15 13 12 17 17 C 1.50699 * 109.47256 * 180.02562 * 16 15 13 18 18 O 1.21304 * 119.99791 * 359.97438 * 17 16 15 19 19 N 1.34780 * 119.99829 * 180.02562 * 17 16 15 20 20 C 1.47153 * 125.56719 * 179.97438 * 19 17 16 21 21 C 1.54162 * 103.56043 * 179.75115 * 20 19 17 22 22 C 1.51203 * 103.93147 * 0.37586 * 21 20 19 23 23 C 1.47486 * 125.23642 * 179.86312 * 22 21 20 24 24 C 1.39680 * 120.15702 * 179.71762 * 23 22 21 25 25 C 1.37936 * 119.84090 * 179.97438 * 24 23 22 26 26 C 1.38368 * 120.15831 * 0.02562 * 25 24 23 27 27 C 1.38369 * 120.31315 * 0.25706 * 26 25 24 28 28 C 1.37931 * 120.16039 * 359.47902 * 27 26 25 29 29 N 1.28796 * 109.52266 * 359.59669 * 22 21 20 30 30 H 1.08997 * 109.47035 * 300.00556 * 1 2 3 31 31 H 1.09004 * 109.46791 * 60.00301 * 1 2 3 32 32 H 1.09002 * 109.47045 * 180.02562 * 1 2 3 33 33 H 0.96998 * 119.99756 * 180.02562 * 7 6 4 34 34 H 1.09009 * 109.47061 * 59.99879 * 15 13 12 35 35 H 1.08997 * 109.47224 * 300.00028 * 15 13 12 36 36 H 1.09001 * 109.47199 * 59.99754 * 16 15 13 37 37 H 1.08997 * 109.47163 * 300.00231 * 16 15 13 38 38 H 1.09004 * 110.60689 * 298.51788 * 20 19 17 39 39 H 1.09000 * 110.60668 * 61.32357 * 20 19 17 40 40 H 1.09005 * 110.65055 * 241.70780 * 21 20 19 41 41 H 1.09000 * 110.41612 * 118.93208 * 21 20 19 42 42 H 1.08001 * 120.07608 * 359.95890 * 24 23 22 43 43 H 1.08007 * 119.91837 * 180.02562 * 25 24 23 44 44 H 1.08002 * 119.83927 * 179.97438 * 26 25 24 45 45 H 1.08001 * 119.91847 * 179.74917 * 27 26 25 46 46 H 1.07997 * 120.08638 * 180.23611 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9435 0.8304 2.6034 8 14 2.3213 -1.1202 4.0080 9 1 3.6295 -0.5457 4.4125 10 1 1.3430 -0.9490 5.1121 11 1 2.4857 -2.5660 3.7121 12 8 2.0141 -0.6845 -1.1855 13 6 2.2173 0.0639 -2.2811 14 8 1.9975 1.2516 -2.2507 15 6 2.7184 -0.5774 -3.5494 16 6 2.8626 0.4885 -4.6374 17 6 3.3631 -0.1529 -5.9059 18 8 3.5834 -1.3454 -5.9365 19 7 3.5670 0.5986 -7.0060 20 6 4.0516 0.1024 -8.3038 21 6 4.0903 1.3680 -9.1831 22 6 3.6204 2.4682 -8.2585 23 6 3.4827 3.8894 -8.6280 24 6 3.0316 4.8184 -7.6875 25 6 2.9058 6.1461 -8.0400 26 6 3.2246 6.5582 -9.3218 27 6 3.6665 5.6425 -10.2602 28 6 3.8023 4.3126 -9.9203 29 7 3.3535 1.9723 -7.1002 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 0.7095 1.1620 3.4843 34 1 2.0088 -1.3372 -3.8773 35 1 3.6873 -1.0411 -3.3638 36 1 3.5719 1.2486 -4.3097 37 1 1.8936 0.9518 -4.8228 38 1 5.0473 -0.3292 -8.2020 39 1 3.3581 -0.6296 -8.7178 40 1 3.4141 1.2672 -10.0321 41 1 5.1071 1.5633 -9.5240 42 1 2.7817 4.4979 -6.6869 43 1 2.5575 6.8656 -7.3136 44 1 3.1238 7.5990 -9.5923 45 1 3.9098 5.9705 -11.2600 46 1 4.1509 3.5995 -10.6527 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113689696.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:17 Heat of formation + Delta-G solvation = -56.002287 kcal Electronic energy + Delta-G solvation = -28333.456175 eV Core-core repulsion = 24189.085249 eV Total energy + Delta-G solvation = -4144.370926 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.00456 -39.71543 -39.32537 -38.40276 -35.78965 -33.47283 -33.24307 -32.83278 -31.66448 -30.92539 -30.39512 -29.53599 -26.36015 -25.27988 -24.25344 -23.61028 -22.50982 -21.41995 -20.93145 -19.52313 -19.14962 -17.82173 -17.37359 -16.89479 -16.59060 -16.50535 -16.03990 -15.74272 -15.29371 -15.16766 -14.74369 -14.69029 -14.35950 -14.18457 -13.84108 -13.64183 -13.53581 -13.26576 -12.84055 -12.68817 -12.41712 -12.29923 -12.16214 -11.89598 -11.76881 -11.64780 -11.54336 -11.23890 -11.06680 -11.00967 -10.81674 -10.76644 -10.34805 -10.27015 -10.22784 -9.72364 -9.59953 -9.48707 -9.37900 -8.86883 -8.47038 -8.46182 -6.15542 -4.22060 0.31812 0.98972 1.75099 2.08657 2.53261 3.04871 3.26984 3.31868 3.35521 3.42474 3.44510 3.71977 3.84466 4.15092 4.36294 4.48070 4.50881 4.54728 4.67189 4.72902 4.95231 4.97603 5.07645 5.09930 5.16625 5.17841 5.21151 5.26066 5.31207 5.53181 5.61608 5.62149 5.90505 5.92631 5.96990 6.03832 6.08188 6.10847 6.50180 6.59314 6.67912 6.92286 6.95152 7.21208 7.27220 7.63478 7.76384 7.80289 7.97490 8.17923 8.67437 8.92572 9.43216 10.91942 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.015457 B = 0.001921 C = 0.001750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.999618 B =14568.705317 C =15994.114682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.214 3.786 3 H 0.047 0.953 4 C -0.520 4.520 5 H 0.069 0.931 6 C 0.061 3.939 7 N -0.890 5.890 8 Si 0.912 3.088 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.271 1.271 12 O -0.355 6.355 13 C 0.454 3.546 14 O -0.524 6.524 15 C -0.104 4.104 16 C -0.114 4.114 17 C 0.557 3.443 18 O -0.518 6.518 19 N -0.473 5.473 20 C 0.075 3.925 21 C -0.130 4.130 22 C 0.130 3.870 23 C -0.033 4.033 24 C -0.079 4.079 25 C -0.121 4.121 26 C -0.104 4.104 27 C -0.124 4.124 28 C -0.091 4.091 29 N -0.226 5.226 30 H 0.099 0.901 31 H 0.016 0.984 32 H 0.037 0.963 33 H 0.266 0.734 34 H 0.106 0.894 35 H 0.107 0.893 36 H 0.109 0.891 37 H 0.108 0.892 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.104 0.896 41 H 0.104 0.896 42 H 0.136 0.864 43 H 0.129 0.871 44 H 0.125 0.875 45 H 0.127 0.873 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.053 8.410 -29.957 31.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.162 3.838 3 H 0.065 0.935 4 C -0.558 4.558 5 H 0.087 0.913 6 C -0.141 4.141 7 N -0.528 5.528 8 Si 0.739 3.261 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.196 1.196 12 O -0.271 6.271 13 C 0.297 3.703 14 O -0.415 6.415 15 C -0.143 4.143 16 C -0.153 4.153 17 C 0.349 3.651 18 O -0.390 6.390 19 N -0.294 5.294 20 C -0.048 4.048 21 C -0.170 4.170 22 C -0.061 4.061 23 C -0.035 4.035 24 C -0.099 4.099 25 C -0.139 4.139 26 C -0.123 4.123 27 C -0.142 4.142 28 C -0.111 4.111 29 N -0.032 5.032 30 H 0.117 0.883 31 H 0.035 0.965 32 H 0.056 0.944 33 H 0.076 0.924 34 H 0.124 0.876 35 H 0.125 0.875 36 H 0.127 0.873 37 H 0.126 0.874 38 H 0.107 0.893 39 H 0.106 0.894 40 H 0.122 0.878 41 H 0.122 0.878 42 H 0.154 0.846 43 H 0.147 0.853 44 H 0.143 0.857 45 H 0.145 0.855 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 5.669 8.077 -28.595 30.250 hybrid contribution 0.495 -0.540 0.038 0.733 sum 6.164 7.537 -28.557 30.171 Atomic orbital electron populations 1.22157 0.97567 1.00112 1.01384 1.20641 0.91410 0.93932 0.77859 0.93529 1.21044 1.32378 1.13451 0.88919 0.91289 1.24898 0.94956 0.95145 0.99084 1.69904 1.36130 1.22609 1.24123 0.86265 0.78508 0.79925 0.81387 1.20422 1.20969 1.19589 1.86488 1.75664 1.43640 1.21354 1.23217 0.74934 0.85938 0.86247 1.90599 1.49037 1.16922 1.84896 1.21062 1.04835 0.98466 0.89900 1.21307 1.05021 0.98998 0.89998 1.20490 0.75861 0.85584 0.83179 1.90773 1.50687 1.14216 1.83333 1.49826 1.64165 1.03406 1.12035 1.22718 1.01832 0.97065 0.83221 1.22281 1.04306 0.91084 0.99338 1.23307 0.97255 0.94202 0.91290 1.17782 1.03184 0.87980 0.94589 1.21477 0.96114 0.92645 0.99664 1.21200 1.00066 0.95851 0.96784 1.21368 0.97627 0.99881 0.93467 1.21065 1.00412 0.92911 0.99836 1.21187 0.98829 0.96370 0.94759 1.74733 1.13734 0.93283 1.21493 0.88261 0.96511 0.94431 0.92439 0.87602 0.87511 0.87305 0.87371 0.89342 0.89394 0.87753 0.87779 0.84570 0.85272 0.85706 0.85488 0.85419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.02 9.33 37.16 0.35 -3.67 16 2 C 0.21 5.91 2.56 -27.88 -0.07 5.83 16 3 H 0.05 1.41 7.16 -51.93 -0.37 1.04 16 4 C -0.52 -14.96 8.90 -34.44 -0.31 -15.26 16 5 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.68 11.32 55.43 0.63 -25.05 16 8 Si 0.91 21.48 29.54 -169.99 -5.02 16.46 16 9 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 12 O -0.36 -8.77 9.86 -39.25 -0.39 -9.15 16 13 C 0.45 9.69 7.93 36.00 0.29 9.97 16 14 O -0.52 -12.35 15.20 -18.75 -0.28 -12.64 16 15 C -0.10 -1.69 5.10 -27.89 -0.14 -1.83 16 16 C -0.11 -1.65 4.55 -27.89 -0.13 -1.77 16 17 C 0.56 7.87 7.91 -10.98 -0.09 7.79 16 18 O -0.52 -8.39 16.31 5.54 0.09 -8.30 16 19 N -0.47 -5.71 3.92 -59.22 -0.23 -5.94 16 20 C 0.07 0.64 7.30 -3.08 -0.02 0.62 16 21 C -0.13 -0.76 6.05 -27.03 -0.16 -0.92 16 22 C 0.13 1.13 7.19 -79.85 -0.57 0.56 16 23 C -0.03 -0.26 5.87 -105.05 -0.62 -0.87 16 24 C -0.08 -0.66 9.68 -39.15 -0.38 -1.04 16 25 C -0.12 -0.82 10.03 -39.64 -0.40 -1.22 16 26 C -0.10 -0.58 10.04 -39.49 -0.40 -0.98 16 27 C -0.12 -0.63 10.03 -39.65 -0.40 -1.03 16 28 C -0.09 -0.51 9.60 -39.15 -0.38 -0.88 16 29 N -0.23 -2.60 11.04 35.11 0.39 -2.21 16 30 H 0.10 2.74 6.07 -51.93 -0.32 2.42 16 31 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 34 H 0.11 1.59 8.10 -51.92 -0.42 1.17 16 35 H 0.11 1.63 8.10 -51.93 -0.42 1.21 16 36 H 0.11 1.58 8.10 -51.93 -0.42 1.16 16 37 H 0.11 1.56 8.10 -51.93 -0.42 1.14 16 38 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.14 1.25 7.81 -52.49 -0.41 0.84 16 43 H 0.13 0.70 8.06 -52.48 -0.42 0.27 16 44 H 0.12 0.44 8.06 -52.49 -0.42 0.02 16 45 H 0.13 0.36 8.06 -52.49 -0.42 -0.07 16 46 H 0.13 0.40 7.47 -52.49 -0.39 0.01 16 LS Contribution 395.91 15.07 5.97 5.97 Total: -1.00 -34.56 395.91 -8.89 -43.45 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -6.52 Total: 0.51 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: -3.52 Total: -3.09 kcal Atomic # 7 Polarization: -33.99 SS G_CDS: 0.78 Total: -33.20 kcal Atomic # 8 Polarization: -29.52 SS G_CDS: -0.58 Total: -30.10 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.56 -8.89 -43.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113689696.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.548 kcal (2) G-P(sol) polarization free energy of solvation -34.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds