Wall clock time and date at job start Wed Apr 1 2020 03:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.47255 * 2 1 4 4 C 1.50704 * 109.47045 * 119.99653 * 2 1 3 5 5 H 1.07997 * 120.00170 * 119.99490 * 4 2 1 6 6 C 1.37879 * 119.99967 * 300.00180 * 4 2 1 7 7 N 1.31519 * 120.00008 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99861 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47187 * 90.00147 * 8 6 4 10 10 H 1.48510 * 109.46906 * 209.99768 * 8 6 4 11 11 H 1.48493 * 109.47200 * 329.99687 * 8 6 4 12 12 O 1.45200 * 109.47351 * 239.99674 * 2 1 3 13 13 C 1.34228 * 117.00094 * 90.00103 * 12 2 1 14 14 O 1.20823 * 119.99973 * 359.97438 * 13 12 2 15 15 C 1.50699 * 120.00022 * 180.02562 * 13 12 2 16 16 C 1.52997 * 109.47256 * 179.97438 * 15 13 12 17 17 C 1.50699 * 109.47256 * 180.02562 * 16 15 13 18 18 O 1.21304 * 119.99791 * 359.97438 * 17 16 15 19 19 N 1.34780 * 119.99829 * 180.02562 * 17 16 15 20 20 C 1.47153 * 125.56719 * 179.97438 * 19 17 16 21 21 C 1.54162 * 103.56043 * 179.75115 * 20 19 17 22 22 C 1.51203 * 103.93147 * 0.37586 * 21 20 19 23 23 C 1.47486 * 125.23642 * 179.86312 * 22 21 20 24 24 C 1.39680 * 120.15702 * 179.71762 * 23 22 21 25 25 C 1.37936 * 119.84090 * 179.97438 * 24 23 22 26 26 C 1.38368 * 120.15831 * 0.02562 * 25 24 23 27 27 C 1.38369 * 120.31315 * 0.25706 * 26 25 24 28 28 C 1.37931 * 120.16039 * 359.47902 * 27 26 25 29 29 N 1.28796 * 109.52266 * 359.59669 * 22 21 20 30 30 H 1.08997 * 109.47035 * 300.00556 * 1 2 3 31 31 H 1.09004 * 109.46791 * 60.00301 * 1 2 3 32 32 H 1.09002 * 109.47045 * 180.02562 * 1 2 3 33 33 H 0.96998 * 119.99756 * 180.02562 * 7 6 4 34 34 H 1.09009 * 109.47061 * 59.99879 * 15 13 12 35 35 H 1.08997 * 109.47224 * 300.00028 * 15 13 12 36 36 H 1.09001 * 109.47199 * 59.99754 * 16 15 13 37 37 H 1.08997 * 109.47163 * 300.00231 * 16 15 13 38 38 H 1.09004 * 110.60689 * 298.51788 * 20 19 17 39 39 H 1.09000 * 110.60668 * 61.32357 * 20 19 17 40 40 H 1.09005 * 110.65055 * 241.70780 * 21 20 19 41 41 H 1.09000 * 110.41612 * 118.93208 * 21 20 19 42 42 H 1.08001 * 120.07608 * 359.95890 * 24 23 22 43 43 H 1.08007 * 119.91837 * 180.02562 * 25 24 23 44 44 H 1.08002 * 119.83927 * 179.97438 * 26 25 24 45 45 H 1.08001 * 119.91847 * 179.74917 * 27 26 25 46 46 H 1.07997 * 120.08638 * 180.23611 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9435 0.8304 2.6034 8 14 2.3213 -1.1202 4.0080 9 1 3.6295 -0.5457 4.4125 10 1 1.3430 -0.9490 5.1121 11 1 2.4857 -2.5660 3.7121 12 8 2.0141 -0.6845 -1.1855 13 6 2.2173 0.0639 -2.2811 14 8 1.9975 1.2516 -2.2507 15 6 2.7184 -0.5774 -3.5494 16 6 2.8626 0.4885 -4.6374 17 6 3.3631 -0.1529 -5.9059 18 8 3.5834 -1.3454 -5.9365 19 7 3.5670 0.5986 -7.0060 20 6 4.0516 0.1024 -8.3038 21 6 4.0903 1.3680 -9.1831 22 6 3.6204 2.4682 -8.2585 23 6 3.4827 3.8894 -8.6280 24 6 3.0316 4.8184 -7.6875 25 6 2.9058 6.1461 -8.0400 26 6 3.2246 6.5582 -9.3218 27 6 3.6665 5.6425 -10.2602 28 6 3.8023 4.3126 -9.9203 29 7 3.3535 1.9723 -7.1002 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 0.7095 1.1620 3.4843 34 1 2.0088 -1.3372 -3.8773 35 1 3.6873 -1.0411 -3.3638 36 1 3.5719 1.2486 -4.3097 37 1 1.8936 0.9518 -4.8228 38 1 5.0473 -0.3292 -8.2020 39 1 3.3581 -0.6296 -8.7178 40 1 3.4141 1.2672 -10.0321 41 1 5.1071 1.5633 -9.5240 42 1 2.7817 4.4979 -6.6869 43 1 2.5575 6.8656 -7.3136 44 1 3.1238 7.5990 -9.5923 45 1 3.9098 5.9705 -11.2600 46 1 4.1509 3.5995 -10.6527 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113689696.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:16 Heat of formation + Delta-G solvation = -75.366037 kcal Electronic energy + Delta-G solvation = -28334.295850 eV Core-core repulsion = 24189.085249 eV Total energy + Delta-G solvation = -4145.210602 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.86311 -41.30948 -40.20538 -39.21934 -37.71569 -35.35085 -34.35627 -34.01086 -32.23783 -31.74783 -31.42541 -31.02455 -27.62702 -27.39895 -25.14211 -24.18838 -23.46353 -22.84650 -21.72670 -21.24314 -20.08498 -19.08521 -18.62175 -18.28694 -17.80914 -17.75051 -17.14519 -17.07432 -16.65907 -16.18739 -15.94749 -15.77635 -15.63783 -14.85328 -14.72663 -14.63801 -14.41052 -14.29283 -14.16257 -14.05006 -13.79539 -13.28742 -13.19738 -13.12933 -12.99278 -12.96429 -12.89287 -12.84252 -12.40090 -12.37400 -12.23672 -12.16638 -12.03637 -11.61493 -11.42844 -11.41280 -11.33100 -11.00578 -10.61465 -10.32755 -9.85127 -9.18316 -8.30188 -6.47086 -0.26775 0.51852 1.00038 1.23017 1.28576 1.40898 1.43009 1.54832 1.66064 1.97733 2.39428 2.85783 2.95396 3.00244 3.14274 3.47284 3.56810 3.85937 3.90935 3.99815 4.03222 4.11628 4.13738 4.29479 4.43337 4.45641 4.53522 4.55300 4.62449 4.65060 4.69819 4.76641 4.77263 4.77311 4.81749 4.83930 5.05179 5.14668 5.16735 5.44920 5.47183 5.57365 5.61079 5.62925 5.79479 5.89975 6.05015 6.06619 6.38608 6.57649 6.87729 6.92890 7.24508 8.77652 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.015457 B = 0.001921 C = 0.001750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.999618 B =14568.705317 C =15994.114682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.215 3.785 3 H 0.009 0.991 4 C -0.550 4.550 5 H 0.067 0.933 6 C 0.015 3.985 7 N -0.916 5.916 8 Si 0.985 3.015 9 H -0.271 1.271 10 H -0.274 1.274 11 H -0.264 1.264 12 O -0.364 6.364 13 C 0.450 3.550 14 O -0.549 6.549 15 C -0.089 4.089 16 C -0.106 4.106 17 C 0.560 3.440 18 O -0.547 6.547 19 N -0.478 5.478 20 C 0.065 3.935 21 C -0.121 4.121 22 C 0.149 3.851 23 C -0.056 4.056 24 C -0.101 4.101 25 C -0.136 4.136 26 C -0.102 4.102 27 C -0.124 4.124 28 C -0.081 4.081 29 N -0.280 5.280 30 H 0.082 0.918 31 H 0.024 0.976 32 H 0.045 0.955 33 H 0.271 0.729 34 H 0.122 0.878 35 H 0.120 0.880 36 H 0.103 0.897 37 H 0.104 0.896 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.134 0.866 41 H 0.134 0.866 42 H 0.113 0.887 43 H 0.134 0.866 44 H 0.147 0.853 45 H 0.158 0.842 46 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.102 8.463 -32.629 34.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.162 3.838 3 H 0.027 0.973 4 C -0.587 4.587 5 H 0.085 0.915 6 C -0.185 4.185 7 N -0.554 5.554 8 Si 0.808 3.192 9 H -0.197 1.197 10 H -0.199 1.199 11 H -0.188 1.188 12 O -0.280 6.280 13 C 0.295 3.705 14 O -0.441 6.441 15 C -0.127 4.127 16 C -0.145 4.145 17 C 0.351 3.649 18 O -0.422 6.422 19 N -0.297 5.297 20 C -0.057 4.057 21 C -0.160 4.160 22 C -0.041 4.041 23 C -0.058 4.058 24 C -0.122 4.122 25 C -0.154 4.154 26 C -0.121 4.121 27 C -0.142 4.142 28 C -0.101 4.101 29 N -0.086 5.086 30 H 0.100 0.900 31 H 0.043 0.957 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.140 0.860 35 H 0.138 0.862 36 H 0.121 0.879 37 H 0.123 0.877 38 H 0.110 0.890 39 H 0.111 0.889 40 H 0.152 0.848 41 H 0.152 0.848 42 H 0.132 0.868 43 H 0.152 0.848 44 H 0.165 0.835 45 H 0.175 0.825 46 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 6.719 8.168 -31.322 33.060 hybrid contribution 0.179 -0.322 0.672 0.766 sum 6.898 7.847 -30.650 32.382 Atomic orbital electron populations 1.21984 0.96647 1.00430 1.00918 1.20390 0.92152 0.92157 0.79144 0.97269 1.21304 1.33471 1.13938 0.90000 0.91517 1.25862 0.94710 0.95735 1.02189 1.70019 1.36509 1.23624 1.25264 0.85154 0.78162 0.78861 0.77054 1.19683 1.19862 1.18782 1.86482 1.76119 1.43854 1.21584 1.24209 0.73918 0.85725 0.86610 1.90584 1.50078 1.18214 1.85216 1.21084 1.05449 0.98853 0.87314 1.21163 1.04832 0.98276 0.90249 1.20090 0.76009 0.85249 0.83574 1.90750 1.52482 1.15009 1.83984 1.49738 1.63543 1.03984 1.12470 1.23013 1.02003 0.98612 0.82105 1.22420 1.06626 0.88165 0.98824 1.23825 0.93989 0.95134 0.91129 1.17939 1.04822 0.87325 0.95717 1.21476 0.97558 0.93876 0.99252 1.21358 1.00697 0.95344 0.97985 1.21716 0.96301 1.01334 0.92761 1.21488 0.99212 0.92528 1.00992 1.21548 0.97177 0.97358 0.93979 1.74837 1.17308 0.92879 1.23547 0.89953 0.95652 0.93564 0.91934 0.85961 0.86221 0.87916 0.87745 0.88965 0.88949 0.84785 0.84838 0.86843 0.84802 0.83488 0.82455 0.82287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.59 9.33 71.98 0.67 -6.91 16 2 C 0.21 12.28 2.56 29.85 0.08 12.36 16 3 H 0.01 0.60 7.16 -2.39 -0.02 0.58 16 4 C -0.55 -32.27 8.90 25.60 0.23 -32.04 16 5 H 0.07 3.85 7.81 -2.91 -0.02 3.82 16 6 C 0.01 0.83 5.30 84.65 0.45 1.28 16 7 N -0.92 -53.69 11.32 21.45 0.24 -53.45 16 8 Si 0.98 43.94 29.54 68.60 2.03 45.97 16 9 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 10 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 11 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 12 O -0.36 -18.48 9.86 -51.39 -0.51 -18.99 16 13 C 0.45 19.89 7.93 71.24 0.56 20.45 16 14 O -0.55 -27.11 15.20 21.97 0.33 -26.78 16 15 C -0.09 -2.93 5.10 29.85 0.15 -2.78 16 16 C -0.11 -3.18 4.55 29.85 0.14 -3.05 16 17 C 0.56 16.14 7.91 87.66 0.69 16.83 16 18 O -0.55 -17.85 16.31 -3.10 -0.05 -17.90 16 19 N -0.48 -11.57 3.92 -459.66 -1.80 -13.37 16 20 C 0.06 1.02 7.30 86.65 0.63 1.65 16 21 C -0.12 -1.05 6.05 30.40 0.18 -0.86 16 22 C 0.15 2.42 7.19 45.60 0.33 2.75 16 23 C -0.06 -0.80 5.87 -20.14 -0.12 -0.92 16 24 C -0.10 -1.76 9.68 22.55 0.22 -1.54 16 25 C -0.14 -1.82 10.03 22.23 0.22 -1.59 16 26 C -0.10 -0.90 10.04 22.33 0.22 -0.68 16 27 C -0.12 -0.81 10.03 22.23 0.22 -0.59 16 28 C -0.08 -0.63 9.60 22.55 0.22 -0.41 16 29 N -0.28 -6.56 11.04 -42.85 -0.47 -7.03 16 30 H 0.08 4.67 6.07 -2.39 -0.01 4.66 16 31 H 0.02 1.24 8.14 -2.38 -0.02 1.22 16 32 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 33 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 34 H 0.12 3.67 8.10 -2.38 -0.02 3.65 16 35 H 0.12 3.67 8.10 -2.39 -0.02 3.65 16 36 H 0.10 3.19 8.10 -2.39 -0.02 3.17 16 37 H 0.10 3.19 8.10 -2.39 -0.02 3.17 16 38 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 39 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.13 0.45 8.14 -2.38 -0.02 0.43 16 41 H 0.13 0.45 8.14 -2.39 -0.02 0.43 16 42 H 0.11 2.38 7.81 -2.91 -0.02 2.36 16 43 H 0.13 1.51 8.06 -2.91 -0.02 1.48 16 44 H 0.15 0.60 8.06 -2.91 -0.02 0.58 16 45 H 0.16 0.10 8.06 -2.91 -0.02 0.08 16 46 H 0.16 0.19 7.47 -2.91 -0.02 0.16 16 Total: -1.00 -77.72 395.91 5.86 -71.86 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: 0.99 Total: 15.75 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: 5.10 Total: 3.94 kcal Atomic # 7 Polarization: -71.82 SS G_CDS: -2.03 Total: -73.85 kcal Atomic # 8 Polarization: -63.44 SS G_CDS: -0.22 Total: -63.67 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -77.72 5.86 -71.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113689696.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.504 kcal (2) G-P(sol) polarization free energy of solvation -77.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds