Wall clock time and date at job start Wed Apr 1 2020 03:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46750 * 2 1 4 4 C 1.50696 * 109.46881 * 240.00243 * 2 1 3 5 5 H 1.08008 * 120.00010 * 245.46055 * 4 2 1 6 6 C 1.37879 * 120.00329 * 65.45465 * 4 2 1 7 7 N 1.31509 * 119.99757 * 9.55861 * 6 4 2 8 8 Si 1.86802 * 120.00185 * 189.55093 * 6 4 2 9 9 H 1.48494 * 109.47166 * 84.99717 * 8 6 4 10 10 H 1.48500 * 109.46867 * 204.99874 * 8 6 4 11 11 H 1.48504 * 109.46968 * 324.99815 * 8 6 4 12 12 O 1.45192 * 109.47126 * 119.99890 * 2 1 3 13 13 C 1.34230 * 117.00181 * 269.99703 * 12 2 1 14 14 O 1.20818 * 119.99887 * 0.02562 * 13 12 2 15 15 C 1.50698 * 120.00038 * 180.02562 * 13 12 2 16 16 C 1.52999 * 109.47125 * 180.02562 * 15 13 12 17 17 C 1.50706 * 109.47020 * 179.97438 * 16 15 13 18 18 O 1.21304 * 120.00048 * 0.02562 * 17 16 15 19 19 N 1.34782 * 119.99524 * 179.97438 * 17 16 15 20 20 C 1.47157 * 125.56396 * 179.71601 * 19 17 16 21 21 C 1.54156 * 103.55899 * 179.97438 * 20 19 17 22 22 C 1.51205 * 103.93518 * 0.32561 * 21 20 19 23 23 C 1.47480 * 125.23897 * 179.78757 * 22 21 20 24 24 C 1.39687 * 120.15725 * 359.70018 * 23 22 21 25 25 C 1.37931 * 119.84056 * 179.80911 * 24 23 22 26 26 C 1.38370 * 120.15813 * 0.44677 * 25 24 23 27 27 C 1.38374 * 120.31571 * 359.78218 * 26 25 24 28 28 C 1.37931 * 120.15216 * 0.02562 * 27 26 25 29 29 N 1.28796 * 109.51969 * 359.78495 * 22 21 20 30 30 H 1.09006 * 109.47274 * 183.66963 * 1 2 3 31 31 H 1.09001 * 109.47249 * 303.66539 * 1 2 3 32 32 H 1.08997 * 109.47508 * 63.66603 * 1 2 3 33 33 H 0.97004 * 119.99869 * 179.97438 * 7 6 4 34 34 H 1.09000 * 109.47566 * 59.99855 * 15 13 12 35 35 H 1.09007 * 109.47144 * 299.99991 * 15 13 12 36 36 H 1.08994 * 109.47297 * 299.99905 * 16 15 13 37 37 H 1.09005 * 109.46967 * 60.00206 * 16 15 13 38 38 H 1.09001 * 110.60936 * 298.56410 * 20 19 17 39 39 H 1.09001 * 110.60251 * 61.52750 * 20 19 17 40 40 H 1.09001 * 110.71355 * 241.63071 * 21 20 19 41 41 H 1.08999 * 110.35827 * 118.84905 * 21 20 19 42 42 H 1.07999 * 120.08016 * 0.02562 * 24 23 22 43 43 H 1.08001 * 119.92034 * 180.20661 * 25 24 23 44 44 H 1.08000 * 119.84251 * 179.76536 * 26 25 24 45 45 H 1.07997 * 119.91864 * 179.97438 * 27 26 25 46 46 H 1.08006 * 120.07381 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.5785 -1.6371 -1.1339 6 6 1.7944 -0.1774 -2.4796 7 7 1.2991 1.0355 -2.5935 8 14 2.1760 -1.1780 -4.0102 9 1 1.0241 -2.0610 -4.3242 10 1 2.4226 -0.2612 -5.1521 11 1 3.3846 -2.0071 -3.7710 12 8 2.0140 -0.6844 1.1855 13 6 2.2172 0.0641 2.2811 14 8 1.9975 1.2517 2.2505 15 6 2.7194 -0.5770 3.5491 16 6 2.8633 0.4891 4.6371 17 6 3.3650 -0.1521 5.9053 18 8 3.5861 -1.3445 5.9358 19 7 3.5689 0.5995 7.0054 20 6 4.0483 0.1024 8.3048 21 6 4.0963 1.3697 9.1812 22 6 3.6190 2.4686 8.2588 23 6 3.4792 3.8894 8.6288 24 6 3.7926 4.3116 9.9229 25 6 3.6632 5.6426 10.2608 26 6 3.2153 6.5572 9.3241 27 6 2.8985 6.1453 8.0417 28 6 3.0268 4.8181 7.6887 29 7 3.3534 1.9728 7.1001 30 1 -0.3634 -1.0256 0.0658 31 1 -0.3634 0.5697 0.8553 32 1 -0.3634 0.4558 -0.9210 33 1 1.1321 1.4107 -3.4724 34 1 3.6885 -1.0400 3.3631 35 1 2.0105 -1.3372 3.8773 36 1 3.5719 1.2495 4.3092 37 1 1.8940 0.9516 4.8230 38 1 3.3500 -0.6252 8.7186 39 1 5.0430 -0.3322 8.2059 40 1 5.1142 1.5678 9.5171 41 1 3.4244 1.2671 10.0333 42 1 4.1387 3.5982 10.6561 43 1 3.9083 5.9710 11.2601 44 1 3.1123 7.5976 9.5953 45 1 2.5491 6.8646 7.3158 46 1 2.7788 4.4980 6.6874 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113689697.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:21 Heat of formation + Delta-G solvation = -57.239191 kcal Electronic energy + Delta-G solvation = -28331.336178 eV Core-core repulsion = 24186.911616 eV Total energy + Delta-G solvation = -4144.424563 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.00219 -39.71261 -39.32266 -38.40035 -35.78618 -33.47003 -33.20293 -32.82403 -31.66238 -30.92494 -30.39302 -29.65631 -26.36611 -25.24704 -24.25349 -23.60770 -22.50995 -21.44521 -20.93434 -19.52913 -19.14751 -17.82014 -17.37235 -16.89355 -16.57757 -16.50029 -16.03869 -15.74494 -15.29075 -15.16360 -14.73914 -14.68681 -14.34208 -14.18050 -13.83812 -13.64278 -13.53484 -13.27180 -12.83012 -12.67522 -12.41819 -12.30736 -12.16567 -11.94583 -11.76627 -11.67975 -11.54333 -11.30930 -11.04863 -11.00723 -10.79042 -10.76369 -10.42401 -10.31142 -10.22698 -9.72118 -9.60833 -9.46133 -9.37622 -8.91011 -8.46753 -8.45107 -6.17357 -4.20784 0.32083 0.99270 1.75373 2.08911 2.53530 3.05274 3.27912 3.32519 3.35144 3.42616 3.44801 3.72238 3.84658 4.15321 4.36849 4.48395 4.51132 4.55013 4.67431 4.73183 4.95496 4.97869 5.07892 5.10098 5.16234 5.17625 5.21292 5.26389 5.31433 5.53464 5.61683 5.62438 5.89746 5.93031 5.97257 6.04129 6.08454 6.11151 6.50472 6.59553 6.62989 6.85147 6.89315 7.15995 7.27426 7.58548 7.71340 7.80406 7.90568 8.16527 8.67653 8.93895 9.43271 10.92020 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.015494 B = 0.001926 C = 0.001750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.684937 B =14537.988418 C =15991.870371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.212 3.788 3 H 0.054 0.946 4 C -0.523 4.523 5 H 0.069 0.931 6 C 0.064 3.936 7 N -0.887 5.887 8 Si 0.909 3.091 9 H -0.277 1.277 10 H -0.285 1.285 11 H -0.272 1.272 12 O -0.355 6.355 13 C 0.453 3.547 14 O -0.523 6.523 15 C -0.104 4.104 16 C -0.114 4.114 17 C 0.557 3.443 18 O -0.518 6.518 19 N -0.473 5.473 20 C 0.075 3.925 21 C -0.130 4.130 22 C 0.130 3.870 23 C -0.033 4.033 24 C -0.091 4.091 25 C -0.124 4.124 26 C -0.104 4.104 27 C -0.121 4.121 28 C -0.079 4.079 29 N -0.226 5.226 30 H 0.039 0.961 31 H 0.021 0.979 32 H 0.082 0.918 33 H 0.266 0.734 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.109 0.891 37 H 0.108 0.892 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.104 0.896 41 H 0.104 0.896 42 H 0.128 0.872 43 H 0.127 0.873 44 H 0.125 0.875 45 H 0.129 0.871 46 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.319 8.000 30.058 31.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.159 3.841 3 H 0.072 0.928 4 C -0.561 4.561 5 H 0.087 0.913 6 C -0.139 4.139 7 N -0.524 5.524 8 Si 0.735 3.265 9 H -0.203 1.203 10 H -0.211 1.211 11 H -0.197 1.197 12 O -0.271 6.271 13 C 0.296 3.704 14 O -0.414 6.414 15 C -0.143 4.143 16 C -0.153 4.153 17 C 0.349 3.651 18 O -0.390 6.390 19 N -0.294 5.294 20 C -0.048 4.048 21 C -0.170 4.170 22 C -0.061 4.061 23 C -0.035 4.035 24 C -0.111 4.111 25 C -0.142 4.142 26 C -0.123 4.123 27 C -0.139 4.139 28 C -0.099 4.099 29 N -0.032 5.032 30 H 0.058 0.942 31 H 0.040 0.960 32 H 0.100 0.900 33 H 0.076 0.924 34 H 0.125 0.875 35 H 0.124 0.876 36 H 0.127 0.873 37 H 0.126 0.874 38 H 0.106 0.894 39 H 0.107 0.893 40 H 0.123 0.877 41 H 0.122 0.878 42 H 0.146 0.854 43 H 0.145 0.855 44 H 0.143 0.857 45 H 0.147 0.853 46 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 4.972 7.695 28.699 30.126 hybrid contribution 0.368 -0.588 -0.073 0.698 sum 5.340 7.107 28.626 29.974 Atomic orbital electron populations 1.22079 0.97951 0.99564 1.01054 1.20639 0.90975 0.94517 0.77923 0.92841 1.20991 1.37105 1.08984 0.89025 0.91282 1.24908 0.95097 0.94811 0.99083 1.69991 1.44156 1.13799 1.24469 0.86341 0.78937 0.79737 0.81442 1.20253 1.21090 1.19654 1.86485 1.75678 1.43635 1.21344 1.23220 0.74954 0.85948 0.86232 1.90601 1.48999 1.16898 1.84864 1.21062 1.04834 0.98458 0.89900 1.21310 1.05011 0.99008 0.90000 1.20493 0.75859 0.85574 0.83185 1.90773 1.50679 1.14227 1.83335 1.49828 1.64242 1.03403 1.11962 1.22720 1.01866 0.97039 0.83202 1.22283 1.04266 0.91090 0.99386 1.23306 0.97248 0.94208 0.91295 1.17779 1.03204 0.87996 0.94554 1.21186 0.98865 0.96355 0.94741 1.21065 1.00395 0.92898 0.99869 1.21369 0.97601 0.99894 0.93480 1.21199 1.00085 0.95853 0.96760 1.21477 0.96080 0.92651 0.99689 1.74733 1.13757 0.93297 1.21450 0.94198 0.96026 0.89965 0.92420 0.87500 0.87618 0.87291 0.87375 0.89371 0.89349 0.87743 0.87798 0.85422 0.85489 0.85708 0.85269 0.84567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.78 9.42 37.16 0.35 -3.43 16 2 C 0.21 5.83 2.42 -27.88 -0.07 5.76 16 3 H 0.05 1.63 7.10 -51.93 -0.37 1.26 16 4 C -0.52 -15.04 8.82 -34.44 -0.30 -15.34 16 5 H 0.07 1.96 7.83 -52.48 -0.41 1.55 16 6 C 0.06 1.79 5.17 -17.82 -0.09 1.70 16 7 N -0.89 -25.82 12.16 55.43 0.67 -25.15 16 8 Si 0.91 21.47 29.55 -169.99 -5.02 16.44 16 9 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 12 O -0.36 -8.74 9.86 -39.26 -0.39 -9.12 16 13 C 0.45 9.68 7.93 36.00 0.29 9.96 16 14 O -0.52 -12.35 15.20 -18.74 -0.28 -12.64 16 15 C -0.10 -1.68 5.10 -27.88 -0.14 -1.82 16 16 C -0.11 -1.65 4.55 -27.88 -0.13 -1.78 16 17 C 0.56 7.88 7.91 -10.98 -0.09 7.79 16 18 O -0.52 -8.39 16.31 5.54 0.09 -8.30 16 19 N -0.47 -5.72 3.92 -59.22 -0.23 -5.95 16 20 C 0.07 0.64 7.30 -3.08 -0.02 0.62 16 21 C -0.13 -0.76 6.05 -27.03 -0.16 -0.93 16 22 C 0.13 1.13 7.19 -79.85 -0.57 0.56 16 23 C -0.03 -0.26 5.87 -105.05 -0.62 -0.88 16 24 C -0.09 -0.51 9.60 -39.15 -0.38 -0.88 16 25 C -0.12 -0.63 10.03 -39.65 -0.40 -1.03 16 26 C -0.10 -0.58 10.04 -39.48 -0.40 -0.98 16 27 C -0.12 -0.83 10.03 -39.64 -0.40 -1.23 16 28 C -0.08 -0.66 9.68 -39.15 -0.38 -1.04 16 29 N -0.23 -2.61 11.04 35.10 0.39 -2.22 16 30 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.08 2.21 6.83 -51.93 -0.35 1.85 16 33 H 0.27 7.27 8.31 -40.82 -0.34 6.94 16 34 H 0.11 1.64 8.10 -51.93 -0.42 1.22 16 35 H 0.11 1.58 8.10 -51.92 -0.42 1.16 16 36 H 0.11 1.59 8.10 -51.93 -0.42 1.17 16 37 H 0.11 1.56 8.10 -51.93 -0.42 1.14 16 38 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.13 0.40 7.47 -52.49 -0.39 0.01 16 43 H 0.13 0.36 8.06 -52.49 -0.42 -0.06 16 44 H 0.12 0.44 8.06 -52.49 -0.42 0.02 16 45 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 46 H 0.14 1.25 7.81 -52.48 -0.41 0.84 16 LS Contribution 397.24 15.07 5.99 5.99 Total: -1.00 -34.71 397.24 -8.85 -43.57 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -6.56 Total: 0.33 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: -3.51 Total: -2.95 kcal Atomic # 7 Polarization: -34.14 SS G_CDS: 0.83 Total: -33.31 kcal Atomic # 8 Polarization: -29.48 SS G_CDS: -0.58 Total: -30.06 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.71 -8.85 -43.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113689697.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.671 kcal (2) G-P(sol) polarization free energy of solvation -34.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds