Wall clock time and date at job start Wed Apr 1 2020 03:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46750 * 2 1 4 4 C 1.50696 * 109.46881 * 240.00243 * 2 1 3 5 5 H 1.08008 * 120.00010 * 245.46055 * 4 2 1 6 6 C 1.37879 * 120.00329 * 65.45465 * 4 2 1 7 7 N 1.31509 * 119.99757 * 9.55861 * 6 4 2 8 8 Si 1.86802 * 120.00185 * 189.55093 * 6 4 2 9 9 H 1.48494 * 109.47166 * 84.99717 * 8 6 4 10 10 H 1.48500 * 109.46867 * 204.99874 * 8 6 4 11 11 H 1.48504 * 109.46968 * 324.99815 * 8 6 4 12 12 O 1.45192 * 109.47126 * 119.99890 * 2 1 3 13 13 C 1.34230 * 117.00181 * 269.99703 * 12 2 1 14 14 O 1.20818 * 119.99887 * 0.02562 * 13 12 2 15 15 C 1.50698 * 120.00038 * 180.02562 * 13 12 2 16 16 C 1.52999 * 109.47125 * 180.02562 * 15 13 12 17 17 C 1.50706 * 109.47020 * 179.97438 * 16 15 13 18 18 O 1.21304 * 120.00048 * 0.02562 * 17 16 15 19 19 N 1.34782 * 119.99524 * 179.97438 * 17 16 15 20 20 C 1.47157 * 125.56396 * 179.71601 * 19 17 16 21 21 C 1.54156 * 103.55899 * 179.97438 * 20 19 17 22 22 C 1.51205 * 103.93518 * 0.32561 * 21 20 19 23 23 C 1.47480 * 125.23897 * 179.78757 * 22 21 20 24 24 C 1.39687 * 120.15725 * 359.70018 * 23 22 21 25 25 C 1.37931 * 119.84056 * 179.80911 * 24 23 22 26 26 C 1.38370 * 120.15813 * 0.44677 * 25 24 23 27 27 C 1.38374 * 120.31571 * 359.78218 * 26 25 24 28 28 C 1.37931 * 120.15216 * 0.02562 * 27 26 25 29 29 N 1.28796 * 109.51969 * 359.78495 * 22 21 20 30 30 H 1.09006 * 109.47274 * 183.66963 * 1 2 3 31 31 H 1.09001 * 109.47249 * 303.66539 * 1 2 3 32 32 H 1.08997 * 109.47508 * 63.66603 * 1 2 3 33 33 H 0.97004 * 119.99869 * 179.97438 * 7 6 4 34 34 H 1.09000 * 109.47566 * 59.99855 * 15 13 12 35 35 H 1.09007 * 109.47144 * 299.99991 * 15 13 12 36 36 H 1.08994 * 109.47297 * 299.99905 * 16 15 13 37 37 H 1.09005 * 109.46967 * 60.00206 * 16 15 13 38 38 H 1.09001 * 110.60936 * 298.56410 * 20 19 17 39 39 H 1.09001 * 110.60251 * 61.52750 * 20 19 17 40 40 H 1.09001 * 110.71355 * 241.63071 * 21 20 19 41 41 H 1.08999 * 110.35827 * 118.84905 * 21 20 19 42 42 H 1.07999 * 120.08016 * 0.02562 * 24 23 22 43 43 H 1.08001 * 119.92034 * 180.20661 * 25 24 23 44 44 H 1.08000 * 119.84251 * 179.76536 * 26 25 24 45 45 H 1.07997 * 119.91864 * 179.97438 * 27 26 25 46 46 H 1.08006 * 120.07381 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.5785 -1.6371 -1.1339 6 6 1.7944 -0.1774 -2.4796 7 7 1.2991 1.0355 -2.5935 8 14 2.1760 -1.1780 -4.0102 9 1 1.0241 -2.0610 -4.3242 10 1 2.4226 -0.2612 -5.1521 11 1 3.3846 -2.0071 -3.7710 12 8 2.0140 -0.6844 1.1855 13 6 2.2172 0.0641 2.2811 14 8 1.9975 1.2517 2.2505 15 6 2.7194 -0.5770 3.5491 16 6 2.8633 0.4891 4.6371 17 6 3.3650 -0.1521 5.9053 18 8 3.5861 -1.3445 5.9358 19 7 3.5689 0.5995 7.0054 20 6 4.0483 0.1024 8.3048 21 6 4.0963 1.3697 9.1812 22 6 3.6190 2.4686 8.2588 23 6 3.4792 3.8894 8.6288 24 6 3.7926 4.3116 9.9229 25 6 3.6632 5.6426 10.2608 26 6 3.2153 6.5572 9.3241 27 6 2.8985 6.1453 8.0417 28 6 3.0268 4.8181 7.6887 29 7 3.3534 1.9728 7.1001 30 1 -0.3634 -1.0256 0.0658 31 1 -0.3634 0.5697 0.8553 32 1 -0.3634 0.4558 -0.9210 33 1 1.1321 1.4107 -3.4724 34 1 3.6885 -1.0400 3.3631 35 1 2.0105 -1.3372 3.8773 36 1 3.5719 1.2495 4.3092 37 1 1.8940 0.9516 4.8230 38 1 3.3500 -0.6252 8.7186 39 1 5.0430 -0.3322 8.2059 40 1 5.1142 1.5678 9.5171 41 1 3.4244 1.2671 10.0333 42 1 4.1387 3.5982 10.6561 43 1 3.9083 5.9710 11.2601 44 1 3.1123 7.5976 9.5953 45 1 2.5491 6.8646 7.3158 46 1 2.7788 4.4980 6.6874 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113689697.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:20 Heat of formation + Delta-G solvation = -76.825223 kcal Electronic energy + Delta-G solvation = -28332.185493 eV Core-core repulsion = 24186.911616 eV Total energy + Delta-G solvation = -4145.273877 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.86133 -41.30453 -40.20420 -39.21852 -37.70695 -35.30735 -34.35386 -34.00928 -32.24232 -31.82831 -31.44782 -31.02548 -27.61972 -27.36861 -25.14549 -24.18844 -23.48153 -22.85188 -21.72636 -21.24233 -20.08360 -19.08933 -18.60013 -18.28752 -17.81396 -17.74791 -17.15125 -17.05297 -16.65114 -16.17764 -15.95048 -15.77547 -15.63853 -14.84353 -14.72534 -14.65004 -14.40016 -14.29268 -14.15665 -14.05053 -13.86897 -13.29535 -13.27023 -13.12459 -12.96765 -12.95355 -12.89230 -12.77355 -12.51149 -12.37395 -12.23640 -12.17876 -12.03594 -11.60714 -11.42621 -11.40028 -11.32835 -11.01978 -10.61702 -10.32707 -9.85129 -9.18238 -8.32717 -6.46317 -0.26733 0.51871 1.00133 1.23155 1.29189 1.40695 1.43585 1.53837 1.66170 1.98055 2.39369 2.85908 2.95419 2.99010 3.14365 3.47483 3.56921 3.85995 3.91203 4.00076 4.03116 4.11649 4.13774 4.29519 4.43610 4.45629 4.52620 4.55260 4.62475 4.65290 4.69813 4.74561 4.76939 4.77494 4.78413 4.84132 5.05203 5.10779 5.16750 5.44737 5.45213 5.55497 5.57398 5.62937 5.79493 5.83847 6.05036 6.07026 6.38743 6.58593 6.87882 6.93566 7.24326 8.77358 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.015494 B = 0.001926 C = 0.001750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.684937 B =14537.988418 C =15991.870371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.212 3.788 3 H 0.013 0.987 4 C -0.551 4.551 5 H 0.067 0.933 6 C 0.017 3.983 7 N -0.917 5.917 8 Si 0.982 3.018 9 H -0.265 1.265 10 H -0.278 1.278 11 H -0.265 1.265 12 O -0.364 6.364 13 C 0.450 3.550 14 O -0.549 6.549 15 C -0.089 4.089 16 C -0.106 4.106 17 C 0.560 3.440 18 O -0.547 6.547 19 N -0.478 5.478 20 C 0.065 3.935 21 C -0.121 4.121 22 C 0.149 3.851 23 C -0.056 4.056 24 C -0.081 4.081 25 C -0.124 4.124 26 C -0.102 4.102 27 C -0.136 4.136 28 C -0.102 4.102 29 N -0.280 5.280 30 H 0.053 0.947 31 H 0.029 0.971 32 H 0.065 0.935 33 H 0.271 0.729 34 H 0.119 0.881 35 H 0.123 0.877 36 H 0.102 0.898 37 H 0.105 0.895 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.134 0.866 41 H 0.134 0.866 42 H 0.160 0.840 43 H 0.158 0.842 44 H 0.147 0.853 45 H 0.134 0.866 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.172 7.884 32.766 34.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.159 3.841 3 H 0.031 0.969 4 C -0.589 4.589 5 H 0.085 0.915 6 C -0.183 4.183 7 N -0.555 5.555 8 Si 0.805 3.195 9 H -0.190 1.190 10 H -0.203 1.203 11 H -0.190 1.190 12 O -0.280 6.280 13 C 0.295 3.705 14 O -0.441 6.441 15 C -0.127 4.127 16 C -0.145 4.145 17 C 0.351 3.649 18 O -0.422 6.422 19 N -0.297 5.297 20 C -0.057 4.057 21 C -0.161 4.161 22 C -0.041 4.041 23 C -0.058 4.058 24 C -0.101 4.101 25 C -0.142 4.142 26 C -0.121 4.121 27 C -0.154 4.154 28 C -0.122 4.122 29 N -0.086 5.086 30 H 0.072 0.928 31 H 0.048 0.952 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.137 0.863 35 H 0.141 0.859 36 H 0.120 0.880 37 H 0.123 0.877 38 H 0.111 0.889 39 H 0.110 0.890 40 H 0.152 0.848 41 H 0.152 0.848 42 H 0.177 0.823 43 H 0.176 0.824 44 H 0.165 0.835 45 H 0.152 0.848 46 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 5.827 7.613 31.461 32.889 hybrid contribution 0.130 -0.316 -0.714 0.791 sum 5.956 7.298 30.747 32.158 Atomic orbital electron populations 1.21905 0.96660 1.00344 1.00477 1.20395 0.92000 0.92522 0.79154 0.96903 1.21263 1.38201 1.09271 0.90118 0.91487 1.25869 0.94444 0.95749 1.02273 1.70106 1.44516 1.15263 1.25598 0.85217 0.79175 0.78188 0.76961 1.19006 1.20281 1.18981 1.86477 1.76134 1.43830 1.21558 1.24210 0.73933 0.85725 0.86608 1.90587 1.50074 1.18222 1.85197 1.21083 1.05435 0.98854 0.87312 1.21166 1.04821 0.98282 0.90266 1.20092 0.76006 0.85241 0.83577 1.90749 1.52465 1.15012 1.83983 1.49740 1.63616 1.03977 1.12408 1.23015 1.02046 0.98592 0.82073 1.22422 1.06559 0.88173 0.98896 1.23824 0.93995 0.95135 0.91132 1.17937 1.04835 0.87343 0.95685 1.21547 0.97201 0.97349 0.93962 1.21489 0.99193 0.92515 1.01021 1.21718 0.96284 1.01345 0.92767 1.21356 1.00720 0.95344 0.97965 1.21476 0.97535 0.93887 0.99272 1.74836 1.17329 0.92905 1.23505 0.92773 0.95205 0.91656 0.91962 0.86279 0.85876 0.87988 0.87710 0.88895 0.88985 0.84831 0.84799 0.82282 0.82449 0.83488 0.84810 0.86855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.09 9.42 71.98 0.68 -6.41 16 2 C 0.21 12.10 2.42 29.85 0.07 12.17 16 3 H 0.01 0.84 7.10 -2.38 -0.02 0.82 16 4 C -0.55 -32.32 8.82 25.60 0.23 -32.09 16 5 H 0.07 3.86 7.83 -2.91 -0.02 3.84 16 6 C 0.02 0.95 5.17 84.66 0.44 1.39 16 7 N -0.92 -54.42 12.16 21.45 0.26 -54.16 16 8 Si 0.98 43.95 29.55 68.60 2.03 45.98 16 9 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 10 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 11 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 12 O -0.36 -18.38 9.86 -51.41 -0.51 -18.89 16 13 C 0.45 19.87 7.93 71.24 0.56 20.44 16 14 O -0.55 -27.19 15.20 21.99 0.33 -26.85 16 15 C -0.09 -2.92 5.10 29.85 0.15 -2.77 16 16 C -0.11 -3.19 4.55 29.85 0.14 -3.06 16 17 C 0.56 16.15 7.91 87.66 0.69 16.85 16 18 O -0.55 -17.83 16.31 -3.10 -0.05 -17.88 16 19 N -0.48 -11.59 3.92 -459.65 -1.80 -13.39 16 20 C 0.06 1.02 7.30 86.65 0.63 1.65 16 21 C -0.12 -1.05 6.05 30.40 0.18 -0.87 16 22 C 0.15 2.43 7.19 45.60 0.33 2.75 16 23 C -0.06 -0.80 5.87 -20.14 -0.12 -0.92 16 24 C -0.08 -0.63 9.60 22.55 0.22 -0.41 16 25 C -0.12 -0.82 10.03 22.23 0.22 -0.60 16 26 C -0.10 -0.91 10.04 22.33 0.22 -0.69 16 27 C -0.14 -1.83 10.03 22.23 0.22 -1.61 16 28 C -0.10 -1.77 9.68 22.55 0.22 -1.55 16 29 N -0.28 -6.58 11.04 -42.85 -0.47 -7.05 16 30 H 0.05 2.60 8.14 -2.38 -0.02 2.58 16 31 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.06 3.60 6.83 -2.39 -0.02 3.58 16 33 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 34 H 0.12 3.67 8.10 -2.39 -0.02 3.65 16 35 H 0.12 3.66 8.10 -2.38 -0.02 3.64 16 36 H 0.10 3.19 8.10 -2.39 -0.02 3.17 16 37 H 0.10 3.20 8.10 -2.38 -0.02 3.18 16 38 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.13 0.46 8.14 -2.39 -0.02 0.44 16 41 H 0.13 0.44 8.14 -2.39 -0.02 0.42 16 42 H 0.16 0.19 7.47 -2.91 -0.02 0.17 16 43 H 0.16 0.11 8.06 -2.91 -0.02 0.09 16 44 H 0.15 0.61 8.06 -2.91 -0.02 0.59 16 45 H 0.13 1.52 8.06 -2.91 -0.02 1.50 16 46 H 0.11 2.40 7.81 -2.91 -0.02 2.37 16 Total: -1.00 -78.27 397.24 5.87 -72.40 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: 0.99 Total: 15.58 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: 5.09 Total: 4.27 kcal Atomic # 7 Polarization: -72.59 SS G_CDS: -2.01 Total: -74.60 kcal Atomic # 8 Polarization: -63.40 SS G_CDS: -0.22 Total: -63.63 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -78.27 5.87 -72.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113689697.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.424 kcal (2) G-P(sol) polarization free energy of solvation -78.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds