Wall clock time and date at job start Wed Apr 1 2020 03:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47095 * 2 1 4 4 C 1.50701 * 109.46964 * 119.99832 * 2 1 3 5 5 H 1.07994 * 120.00208 * 120.00342 * 4 2 1 6 6 C 1.37880 * 119.99836 * 300.00119 * 4 2 1 7 7 N 1.31518 * 120.00093 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99906 * 179.97438 * 6 4 2 9 9 H 1.48491 * 109.47143 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47032 * 120.00149 * 8 6 4 11 11 H 1.48501 * 109.47273 * 239.99688 * 8 6 4 12 12 N 1.46496 * 109.47110 * 239.99801 * 2 1 3 13 13 C 1.46507 * 120.00254 * 299.99706 * 12 2 1 14 14 C 1.34777 * 120.00204 * 120.00238 * 12 2 1 15 15 O 1.21360 * 119.99980 * 3.44405 * 14 12 2 16 16 C 1.49356 * 120.00377 * 183.43931 * 14 12 2 17 17 O 1.21381 * 119.99607 * 354.24672 * 16 14 12 18 18 N 1.34772 * 120.00391 * 174.51924 * 16 14 12 19 19 C 1.39754 * 120.00481 * 184.36883 * 18 16 14 20 20 C 1.39087 * 120.11007 * 144.14057 * 19 18 16 21 21 C 1.38090 * 120.40833 * 180.09211 * 20 19 18 22 22 C 1.38386 * 120.48078 * 359.90248 * 21 20 19 23 23 C 1.39630 * 119.38096 * 359.93088 * 22 21 20 24 24 C 1.38618 * 120.10236 * 323.86746 * 19 18 16 25 25 C 1.47616 * 120.10566 * 180.34203 * 23 22 21 26 26 O 1.21257 * 121.17022 * 168.60296 * 25 23 22 27 27 C 1.51465 * 117.66019 * 348.62257 * 25 23 22 28 28 C 1.53447 * 107.37128 * 42.48185 * 27 25 23 29 29 C 1.50448 * 119.04385 * 179.75383 * 22 21 20 30 30 H 1.08999 * 109.47736 * 300.00418 * 1 2 3 31 31 H 1.09006 * 109.46965 * 60.00832 * 1 2 3 32 32 H 1.09002 * 109.47095 * 179.97438 * 1 2 3 33 33 H 0.97001 * 120.00140 * 180.02562 * 7 6 4 34 34 H 1.08993 * 109.47152 * 264.19063 * 13 12 2 35 35 H 1.09004 * 109.46773 * 24.19028 * 13 12 2 36 36 H 1.08996 * 109.46991 * 144.18876 * 13 12 2 37 37 H 0.97005 * 119.99461 * 4.36800 * 18 16 14 38 38 H 1.08001 * 119.79283 * 0.07814 * 20 19 18 39 39 H 1.08001 * 119.76022 * 179.87584 * 21 20 19 40 40 H 1.08001 * 120.14268 * 0.05471 * 24 19 18 41 41 H 1.09004 * 109.87619 * 283.02207 * 27 25 23 42 42 H 1.08995 * 109.88045 * 161.94884 * 27 25 23 43 43 H 1.08994 * 109.48878 * 176.01542 * 28 27 25 44 44 H 1.09003 * 109.50086 * 55.96707 * 28 27 25 45 45 H 1.09005 * 109.11833 * 277.96183 * 29 22 21 46 46 H 1.09002 * 109.12324 * 37.09959 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6991 -0.2393 2.4828 7 7 0.9426 0.8298 2.6034 8 14 2.3212 -1.1202 4.0080 9 1 3.1452 -2.2875 3.6039 10 1 3.1463 -0.1872 4.8166 11 1 1.1658 -1.5864 4.8162 12 7 2.0183 -0.6906 -1.1961 13 6 1.6645 -2.0933 -1.4279 14 6 2.7932 -0.0357 -2.0833 15 8 3.1381 1.1064 -1.8608 16 6 3.2276 -0.7155 -3.3403 17 8 2.9716 -1.8890 -3.5152 18 7 3.9086 -0.0273 -4.2778 19 6 4.2355 -0.6368 -5.4923 20 6 4.2280 0.1044 -6.6692 21 6 4.5481 -0.4919 -7.8728 22 6 4.8825 -1.8338 -7.9244 23 6 4.8952 -2.5824 -6.7458 24 6 4.5738 -1.9806 -5.5270 25 6 5.2569 -4.0131 -6.7813 26 8 5.4739 -4.6311 -5.7608 27 6 5.3480 -4.6820 -8.1372 28 6 6.0678 -3.7091 -9.0806 29 6 5.2203 -2.4518 -9.2539 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 0.7085 1.1614 3.4843 34 1 2.4660 -2.7353 -1.0628 35 1 0.7413 -2.3275 -0.8978 36 1 1.5227 -2.2606 -2.4956 37 1 4.1719 0.8910 -4.1097 38 1 3.9699 1.1528 -6.6415 39 1 4.5369 0.0930 -8.7807 40 1 4.5849 -2.5607 -4.6160 41 1 4.3472 -4.8920 -8.5147 42 1 5.9165 -5.6084 -8.0561 43 1 6.2153 -4.1847 -10.0501 44 1 7.0353 -3.4399 -8.6566 45 1 4.2969 -2.7121 -9.7715 46 1 5.7738 -1.7290 -9.8533 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131919841.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:51 Heat of formation + Delta-G solvation = -68.945753 kcal Electronic energy + Delta-G solvation = -29699.588182 eV Core-core repulsion = 25554.655985 eV Total energy + Delta-G solvation = -4144.932197 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.14884 -40.25910 -38.72600 -37.89492 -36.35961 -35.61191 -34.17105 -32.77580 -31.53009 -30.19707 -29.54395 -28.11543 -26.31232 -25.33032 -24.85406 -23.84235 -22.89715 -21.88521 -20.80155 -19.69014 -19.12929 -17.67786 -17.23921 -16.65390 -16.30818 -16.14227 -15.96479 -15.63349 -15.39717 -15.07168 -14.88188 -14.68198 -14.40546 -14.19495 -13.85808 -13.63121 -13.45841 -13.21113 -13.11706 -12.64523 -12.52420 -12.40841 -12.16115 -11.90662 -11.62779 -11.57681 -11.51673 -11.23020 -11.11553 -10.84939 -10.81373 -10.72822 -10.36750 -10.25034 -10.19428 -9.82025 -9.27517 -9.24054 -8.81830 -8.48858 -8.31362 -7.76316 -6.12992 -4.21005 0.41041 0.98497 1.78137 2.19796 2.60043 3.25001 3.33024 3.37499 3.42448 3.66390 3.72963 4.00631 4.23165 4.31458 4.36676 4.51804 4.61370 4.71873 4.75262 4.88530 4.98501 5.11323 5.16927 5.19053 5.26920 5.38457 5.42558 5.55124 5.64002 5.70718 5.96019 5.99341 6.04349 6.11673 6.13503 6.30457 6.52985 6.65039 6.70953 6.74489 6.92981 7.03574 7.24027 7.31170 7.34324 7.63885 7.81206 7.95983 8.06742 8.31758 8.56076 8.84424 9.45375 10.92519 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.020558 B = 0.002390 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.693297 B =11712.934565 C =12519.383892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.254 3.746 3 H 0.067 0.933 4 C -0.526 4.526 5 H 0.062 0.938 6 C 0.065 3.935 7 N -0.888 5.888 8 Si 0.901 3.099 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.549 5.549 13 C 0.071 3.929 14 C 0.494 3.506 15 O -0.536 6.536 16 C 0.508 3.492 17 O -0.496 6.496 18 N -0.653 5.653 19 C 0.133 3.867 20 C -0.107 4.107 21 C -0.115 4.115 22 C -0.051 4.051 23 C -0.153 4.153 24 C -0.061 4.061 25 C 0.397 3.603 26 O -0.446 6.446 27 C -0.163 4.163 28 C -0.114 4.114 29 C -0.085 4.085 30 H 0.098 0.902 31 H 0.013 0.987 32 H 0.034 0.966 33 H 0.264 0.736 34 H 0.053 0.947 35 H 0.071 0.929 36 H 0.088 0.912 37 H 0.424 0.576 38 H 0.134 0.866 39 H 0.133 0.867 40 H 0.152 0.848 41 H 0.103 0.897 42 H 0.094 0.906 43 H 0.080 0.920 44 H 0.070 0.930 45 H 0.085 0.915 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.864 -4.779 -26.246 27.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.154 3.846 3 H 0.085 0.915 4 C -0.565 4.565 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.526 5.526 8 Si 0.729 3.271 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.279 5.279 13 C -0.072 4.072 14 C 0.274 3.726 15 O -0.415 6.415 16 C 0.292 3.708 17 O -0.370 6.370 18 N -0.300 5.300 19 C 0.039 3.961 20 C -0.128 4.128 21 C -0.134 4.134 22 C -0.052 4.052 23 C -0.154 4.154 24 C -0.081 4.081 25 C 0.274 3.726 26 O -0.320 6.320 27 C -0.201 4.201 28 C -0.152 4.152 29 C -0.121 4.121 30 H 0.116 0.884 31 H 0.032 0.968 32 H 0.053 0.947 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.089 0.911 36 H 0.106 0.894 37 H 0.262 0.738 38 H 0.152 0.848 39 H 0.151 0.849 40 H 0.169 0.831 41 H 0.121 0.879 42 H 0.112 0.888 43 H 0.099 0.901 44 H 0.089 0.911 45 H 0.103 0.897 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 6.815 -5.232 -25.443 26.854 hybrid contribution 0.302 0.103 1.011 1.060 sum 7.117 -5.128 -24.432 25.959 Atomic orbital electron populations 1.22120 0.97534 0.99851 1.01123 1.19198 0.91304 0.94595 0.79474 0.91526 1.21315 1.32063 1.13142 0.89950 0.91955 1.24889 0.94843 0.94968 0.99027 1.69880 1.36260 1.22597 1.23838 0.86384 0.78645 0.79626 0.82459 1.19701 1.20843 1.20846 1.48283 1.45305 1.12582 1.21769 1.22168 1.01119 0.81211 1.02709 1.19527 0.82064 0.86775 0.84217 1.90723 1.56128 1.17648 1.77018 1.21050 0.77766 0.86923 0.85086 1.90675 1.52695 1.15438 1.78205 1.43255 1.54719 1.18121 1.13944 1.17678 0.99961 0.92974 0.85479 1.21157 1.00107 1.00662 0.90863 1.20843 1.00891 0.94130 0.97525 1.20024 0.97448 0.93633 0.94084 1.20152 1.06165 0.95803 0.93318 1.21593 0.93967 0.93856 0.98720 1.22733 0.71972 0.87276 0.90593 1.90575 1.36798 1.66773 1.37820 1.22313 1.03610 0.99892 0.94295 1.21502 0.99032 0.94812 0.99805 1.20469 1.00815 0.97221 0.93645 0.88385 0.96789 0.94701 0.92622 0.92831 0.91061 0.89430 0.73772 0.84846 0.84911 0.83088 0.87925 0.88753 0.90112 0.91110 0.89719 0.89879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.50 8.96 37.16 0.33 -3.17 16 2 C 0.25 6.46 2.63 -69.08 -0.18 6.28 16 3 H 0.07 1.91 6.90 -51.93 -0.36 1.55 16 4 C -0.53 -14.31 8.37 -34.44 -0.29 -14.59 16 5 H 0.06 1.70 7.65 -52.49 -0.40 1.30 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -24.80 11.32 55.43 0.63 -24.17 16 8 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 9 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 12 N -0.55 -12.19 2.75 -175.81 -0.48 -12.67 16 13 C 0.07 1.37 8.76 59.85 0.52 1.90 16 14 C 0.49 10.33 7.73 -11.63 -0.09 10.24 16 15 O -0.54 -12.26 15.82 5.49 0.09 -12.17 16 16 C 0.51 8.88 7.61 -11.63 -0.09 8.79 16 17 O -0.50 -9.12 10.64 5.47 0.06 -9.06 16 18 N -0.65 -9.16 5.32 -10.32 -0.05 -9.21 16 19 C 0.13 1.69 6.28 -83.79 -0.53 1.17 16 20 C -0.11 -1.01 9.95 -39.32 -0.39 -1.41 16 21 C -0.12 -0.90 9.64 -39.58 -0.38 -1.28 16 22 C -0.05 -0.43 5.78 -104.17 -0.60 -1.03 16 23 C -0.15 -1.78 5.82 -105.01 -0.61 -2.39 16 24 C -0.06 -0.86 8.25 -38.90 -0.32 -1.18 16 25 C 0.40 4.65 6.89 -30.11 -0.21 4.44 16 26 O -0.45 -6.98 17.26 5.58 0.10 -6.88 16 27 C -0.16 -1.15 6.19 -27.28 -0.17 -1.32 16 28 C -0.11 -0.57 5.90 -26.70 -0.16 -0.73 16 29 C -0.08 -0.43 5.70 -28.20 -0.16 -0.59 16 30 H 0.10 2.53 6.07 -51.93 -0.32 2.21 16 31 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.03 0.77 6.67 -51.93 -0.35 0.42 16 33 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 34 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.07 1.35 6.44 -51.93 -0.33 1.01 16 36 H 0.09 1.59 5.35 -51.94 -0.28 1.31 16 37 H 0.42 5.24 8.30 -40.82 -0.34 4.90 16 38 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 39 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 40 H 0.15 2.54 5.96 -52.49 -0.31 2.23 16 41 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 44 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 45 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.08 0.29 8.11 -51.93 -0.42 -0.13 16 LS Contribution 376.56 15.07 5.67 5.67 Total: -1.00 -32.65 376.56 -8.47 -41.12 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -6.05 Total: 4.43 kcal Atomic # 6 Polarization: 10.20 SS G_CDS: -3.41 Total: 6.79 kcal Atomic # 7 Polarization: -46.14 SS G_CDS: 0.09 Total: -46.05 kcal Atomic # 8 Polarization: -28.36 SS G_CDS: 0.24 Total: -28.12 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.65 -8.47 -41.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131919841.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.821 kcal (2) G-P(sol) polarization free energy of solvation -32.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds