Wall clock time and date at job start Wed Apr 1 2020 03:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47095 * 2 1 4 4 C 1.50701 * 109.46964 * 119.99832 * 2 1 3 5 5 H 1.07994 * 120.00208 * 120.00342 * 4 2 1 6 6 C 1.37880 * 119.99836 * 300.00119 * 4 2 1 7 7 N 1.31518 * 120.00093 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99906 * 179.97438 * 6 4 2 9 9 H 1.48491 * 109.47143 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47032 * 120.00149 * 8 6 4 11 11 H 1.48501 * 109.47273 * 239.99688 * 8 6 4 12 12 N 1.46496 * 109.47110 * 239.99801 * 2 1 3 13 13 C 1.46507 * 120.00254 * 299.99706 * 12 2 1 14 14 C 1.34777 * 120.00204 * 120.00238 * 12 2 1 15 15 O 1.21360 * 119.99980 * 3.44405 * 14 12 2 16 16 C 1.49356 * 120.00377 * 183.43931 * 14 12 2 17 17 O 1.21381 * 119.99607 * 354.24672 * 16 14 12 18 18 N 1.34772 * 120.00391 * 174.51924 * 16 14 12 19 19 C 1.39754 * 120.00481 * 184.36883 * 18 16 14 20 20 C 1.39087 * 120.11007 * 144.14057 * 19 18 16 21 21 C 1.38090 * 120.40833 * 180.09211 * 20 19 18 22 22 C 1.38386 * 120.48078 * 359.90248 * 21 20 19 23 23 C 1.39630 * 119.38096 * 359.93088 * 22 21 20 24 24 C 1.38618 * 120.10236 * 323.86746 * 19 18 16 25 25 C 1.47616 * 120.10566 * 180.34203 * 23 22 21 26 26 O 1.21257 * 121.17022 * 168.60296 * 25 23 22 27 27 C 1.51465 * 117.66019 * 348.62257 * 25 23 22 28 28 C 1.53447 * 107.37128 * 42.48185 * 27 25 23 29 29 C 1.50448 * 119.04385 * 179.75383 * 22 21 20 30 30 H 1.08999 * 109.47736 * 300.00418 * 1 2 3 31 31 H 1.09006 * 109.46965 * 60.00832 * 1 2 3 32 32 H 1.09002 * 109.47095 * 179.97438 * 1 2 3 33 33 H 0.97001 * 120.00140 * 180.02562 * 7 6 4 34 34 H 1.08993 * 109.47152 * 264.19063 * 13 12 2 35 35 H 1.09004 * 109.46773 * 24.19028 * 13 12 2 36 36 H 1.08996 * 109.46991 * 144.18876 * 13 12 2 37 37 H 0.97005 * 119.99461 * 4.36800 * 18 16 14 38 38 H 1.08001 * 119.79283 * 0.07814 * 20 19 18 39 39 H 1.08001 * 119.76022 * 179.87584 * 21 20 19 40 40 H 1.08001 * 120.14268 * 0.05471 * 24 19 18 41 41 H 1.09004 * 109.87619 * 283.02207 * 27 25 23 42 42 H 1.08995 * 109.88045 * 161.94884 * 27 25 23 43 43 H 1.08994 * 109.48878 * 176.01542 * 28 27 25 44 44 H 1.09003 * 109.50086 * 55.96707 * 28 27 25 45 45 H 1.09005 * 109.11833 * 277.96183 * 29 22 21 46 46 H 1.09002 * 109.12324 * 37.09959 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6991 -0.2393 2.4828 7 7 0.9426 0.8298 2.6034 8 14 2.3212 -1.1202 4.0080 9 1 3.1452 -2.2875 3.6039 10 1 3.1463 -0.1872 4.8166 11 1 1.1658 -1.5864 4.8162 12 7 2.0183 -0.6906 -1.1961 13 6 1.6645 -2.0933 -1.4279 14 6 2.7932 -0.0357 -2.0833 15 8 3.1381 1.1064 -1.8608 16 6 3.2276 -0.7155 -3.3403 17 8 2.9716 -1.8890 -3.5152 18 7 3.9086 -0.0273 -4.2778 19 6 4.2355 -0.6368 -5.4923 20 6 4.2280 0.1044 -6.6692 21 6 4.5481 -0.4919 -7.8728 22 6 4.8825 -1.8338 -7.9244 23 6 4.8952 -2.5824 -6.7458 24 6 4.5738 -1.9806 -5.5270 25 6 5.2569 -4.0131 -6.7813 26 8 5.4739 -4.6311 -5.7608 27 6 5.3480 -4.6820 -8.1372 28 6 6.0678 -3.7091 -9.0806 29 6 5.2203 -2.4518 -9.2539 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 0.7085 1.1614 3.4843 34 1 2.4660 -2.7353 -1.0628 35 1 0.7413 -2.3275 -0.8978 36 1 1.5227 -2.2606 -2.4956 37 1 4.1719 0.8910 -4.1097 38 1 3.9699 1.1528 -6.6415 39 1 4.5369 0.0930 -8.7807 40 1 4.5849 -2.5607 -4.6160 41 1 4.3472 -4.8920 -8.5147 42 1 5.9165 -5.6084 -8.0561 43 1 6.2153 -4.1847 -10.0501 44 1 7.0353 -3.4399 -8.6566 45 1 4.2969 -2.7121 -9.7715 46 1 5.7738 -1.7290 -9.8533 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131919841.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:50 Heat of formation + Delta-G solvation = -89.735110 kcal Electronic energy + Delta-G solvation = -29700.489677 eV Core-core repulsion = 25554.655985 eV Total energy + Delta-G solvation = -4145.833691 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.34117 -41.34690 -40.06468 -39.07158 -37.69624 -36.93553 -35.22973 -34.68416 -32.35309 -31.51772 -30.94642 -28.87679 -27.93081 -27.37353 -26.26749 -24.69559 -23.84684 -22.69253 -22.23522 -20.96848 -20.25358 -18.97696 -18.61786 -18.33045 -17.77178 -17.41831 -17.09171 -16.81961 -16.68371 -16.33650 -15.99473 -15.80307 -15.62132 -15.18277 -15.04470 -14.71808 -14.53031 -14.48202 -14.14879 -14.10862 -13.79597 -13.65834 -13.48771 -13.20521 -13.04867 -12.82877 -12.79681 -12.72823 -12.39787 -12.25556 -12.24008 -12.12463 -12.01270 -11.76669 -11.33700 -11.26274 -10.64343 -10.61098 -10.40309 -10.04389 -9.61359 -9.19633 -8.21390 -6.37558 -0.42917 -0.03527 0.49176 1.21761 1.34616 1.38077 1.40330 1.51958 2.02844 2.35109 2.52311 2.68509 2.99459 3.06839 3.22905 3.68743 3.75547 3.87645 4.09023 4.13518 4.14852 4.26987 4.34168 4.41983 4.60001 4.63746 4.67876 4.75222 4.79411 4.82618 4.91557 4.94259 4.96755 5.04234 5.12666 5.17713 5.22962 5.31784 5.33109 5.34307 5.39823 5.42543 5.57361 5.80551 5.86208 5.95410 6.05117 6.42037 6.46866 6.59111 6.69368 6.90903 7.32993 8.83418 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.020558 B = 0.002390 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.693297 B =11712.934565 C =12519.383892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.258 3.742 3 H 0.026 0.974 4 C -0.544 4.544 5 H 0.054 0.946 6 C 0.021 3.979 7 N -0.911 5.911 8 Si 0.965 3.035 9 H -0.272 1.272 10 H -0.280 1.280 11 H -0.271 1.271 12 N -0.561 5.561 13 C 0.078 3.922 14 C 0.489 3.511 15 O -0.561 6.561 16 C 0.515 3.485 17 O -0.510 6.510 18 N -0.635 5.635 19 C 0.102 3.898 20 C -0.094 4.094 21 C -0.106 4.106 22 C -0.031 4.031 23 C -0.178 4.178 24 C -0.088 4.088 25 C 0.390 3.610 26 O -0.505 6.505 27 C -0.158 4.158 28 C -0.110 4.110 29 C -0.085 4.085 30 H 0.076 0.924 31 H 0.027 0.973 32 H 0.046 0.954 33 H 0.268 0.732 34 H 0.047 0.953 35 H 0.075 0.925 36 H 0.101 0.899 37 H 0.431 0.569 38 H 0.161 0.839 39 H 0.179 0.821 40 H 0.109 0.891 41 H 0.123 0.877 42 H 0.097 0.903 43 H 0.113 0.887 44 H 0.061 0.939 45 H 0.108 0.892 46 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.275 -4.751 -30.294 31.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.157 3.843 3 H 0.044 0.956 4 C -0.582 4.582 5 H 0.072 0.928 6 C -0.179 4.179 7 N -0.549 5.549 8 Si 0.790 3.210 9 H -0.197 1.197 10 H -0.206 1.206 11 H -0.197 1.197 12 N -0.291 5.291 13 C -0.063 4.063 14 C 0.271 3.729 15 O -0.442 6.442 16 C 0.297 3.703 17 O -0.386 6.386 18 N -0.283 5.283 19 C 0.009 3.991 20 C -0.114 4.114 21 C -0.124 4.124 22 C -0.032 4.032 23 C -0.180 4.180 24 C -0.109 4.109 25 C 0.271 3.729 26 O -0.383 6.383 27 C -0.195 4.195 28 C -0.147 4.147 29 C -0.121 4.121 30 H 0.095 0.905 31 H 0.046 0.954 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.066 0.934 35 H 0.094 0.906 36 H 0.119 0.881 37 H 0.271 0.729 38 H 0.178 0.822 39 H 0.197 0.803 40 H 0.127 0.873 41 H 0.141 0.859 42 H 0.115 0.885 43 H 0.132 0.868 44 H 0.080 0.920 45 H 0.126 0.874 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 7.240 -5.192 -29.557 30.870 hybrid contribution 0.242 0.149 2.106 2.125 sum 7.482 -5.043 -27.451 28.896 Atomic orbital electron populations 1.21918 0.96219 1.00453 1.00707 1.18863 0.92273 0.92664 0.80503 0.95574 1.21504 1.32436 1.13163 0.91131 0.92771 1.25656 0.94910 0.95612 1.01725 1.69988 1.36781 1.23502 1.24674 0.85409 0.78325 0.78408 0.78896 1.19681 1.20590 1.19655 1.48249 1.45906 1.13523 1.21373 1.22204 1.00955 0.79570 1.03616 1.20118 0.81159 0.86547 0.85115 1.90689 1.56804 1.18830 1.77866 1.20255 0.78724 0.86655 0.84629 1.90673 1.53881 1.15703 1.78312 1.43042 1.53255 1.18064 1.13915 1.17871 1.02514 0.92949 0.85729 1.21525 0.98254 1.01649 0.89985 1.21394 0.98680 0.93988 0.98337 1.20549 0.94402 0.93815 0.94448 1.20358 1.07471 0.96328 0.93805 1.21398 0.96466 0.94530 0.98501 1.23610 0.69902 0.87547 0.91867 1.90548 1.39722 1.67885 1.40143 1.22389 1.05166 1.00244 0.91682 1.21559 0.98201 0.94502 1.00488 1.20666 1.02267 0.97618 0.91590 0.90488 0.95389 0.93482 0.92299 0.93418 0.90614 0.88056 0.72933 0.82166 0.80322 0.87260 0.85947 0.88471 0.86846 0.91969 0.87357 0.86814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.52 8.96 71.98 0.64 -5.87 16 2 C 0.26 13.65 2.63 44.25 0.12 13.77 16 3 H 0.03 1.59 6.90 -2.39 -0.02 1.57 16 4 C -0.54 -30.48 8.37 25.60 0.21 -30.27 16 5 H 0.05 3.05 7.65 -2.91 -0.02 3.03 16 6 C 0.02 1.18 5.30 84.65 0.45 1.63 16 7 N -0.91 -51.94 11.32 21.45 0.24 -51.69 16 8 Si 0.96 43.98 29.54 68.60 2.03 46.01 16 9 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 10 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 11 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 12 N -0.56 -25.90 2.75 -828.48 -2.28 -28.18 16 13 C 0.08 3.14 8.76 127.77 1.12 4.26 16 14 C 0.49 21.39 7.73 87.24 0.67 22.07 16 15 O -0.56 -26.90 15.82 -3.28 -0.05 -26.95 16 16 C 0.51 18.84 7.61 87.24 0.66 19.50 16 17 O -0.51 -19.81 10.64 -3.34 -0.04 -19.85 16 18 N -0.64 -18.28 5.32 -304.93 -1.62 -19.90 16 19 C 0.10 2.59 6.28 38.17 0.24 2.83 16 20 C -0.09 -1.50 9.95 22.44 0.22 -1.28 16 21 C -0.11 -1.15 9.64 22.27 0.21 -0.94 16 22 C -0.03 -0.42 5.78 -19.57 -0.11 -0.53 16 23 C -0.18 -4.10 5.82 -20.12 -0.12 -4.21 16 24 C -0.09 -2.62 8.25 22.71 0.19 -2.43 16 25 C 0.39 9.34 6.89 28.41 0.20 9.54 16 26 O -0.50 -17.20 17.26 -2.96 -0.05 -17.25 16 27 C -0.16 -1.91 6.19 30.24 0.19 -1.72 16 28 C -0.11 -0.66 5.90 30.62 0.18 -0.48 16 29 C -0.09 -0.40 5.70 29.64 0.17 -0.23 16 30 H 0.08 4.07 6.07 -2.39 -0.01 4.06 16 31 H 0.03 1.22 8.14 -2.38 -0.02 1.20 16 32 H 0.05 2.11 6.67 -2.39 -0.02 2.09 16 33 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16 34 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.08 2.91 6.44 -2.38 -0.02 2.90 16 36 H 0.10 3.79 5.35 -2.52 -0.01 3.78 16 37 H 0.43 10.81 8.30 -92.70 -0.77 10.04 16 38 H 0.16 1.68 8.06 -2.91 -0.02 1.66 16 39 H 0.18 0.42 8.06 -2.91 -0.02 0.40 16 40 H 0.11 4.11 5.96 -2.91 -0.02 4.09 16 41 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.11 0.05 8.14 -2.39 -0.02 0.03 16 44 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 45 H 0.11 0.16 8.14 -2.38 -0.02 0.14 16 46 H 0.11 -0.01 8.11 -2.39 -0.02 -0.03 16 Total: -1.00 -77.50 376.56 3.74 -73.76 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: 0.26 Total: 18.42 kcal Atomic # 6 Polarization: 20.39 SS G_CDS: 5.25 Total: 25.64 kcal Atomic # 7 Polarization: -96.11 SS G_CDS: -3.66 Total: -99.77 kcal Atomic # 8 Polarization: -63.91 SS G_CDS: -0.14 Total: -64.05 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -77.50 3.74 -73.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131919841.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.976 kcal (2) G-P(sol) polarization free energy of solvation -77.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds