Wall clock time and date at job start Wed Apr 1 2020 03:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47041 * 2 1 4 4 C 1.50703 * 109.47181 * 239.99479 * 2 1 3 5 5 H 1.08001 * 119.99984 * 245.95113 * 4 2 1 6 6 C 1.37877 * 119.99962 * 65.95176 * 4 2 1 7 7 N 1.31516 * 119.99988 * 199.56634 * 6 4 2 8 8 Si 1.86797 * 119.99751 * 19.83987 * 6 4 2 9 9 H 1.48507 * 109.46844 * 179.72599 * 8 6 4 10 10 H 1.48498 * 109.47265 * 299.72181 * 8 6 4 11 11 H 1.48502 * 109.47256 * 59.72738 * 8 6 4 12 12 N 1.46506 * 109.46669 * 119.99871 * 2 1 3 13 13 C 1.46497 * 120.00161 * 59.99959 * 12 2 1 14 14 C 1.34779 * 119.99725 * 239.99901 * 12 2 1 15 15 O 1.21362 * 119.99601 * 5.78686 * 14 12 2 16 16 C 1.49354 * 120.00131 * 185.79094 * 14 12 2 17 17 O 1.21375 * 119.99747 * 5.33659 * 16 14 12 18 18 N 1.34772 * 120.00067 * 185.34305 * 16 14 12 19 19 C 1.39756 * 120.00165 * 185.04954 * 18 16 14 20 20 C 1.39090 * 120.10634 * 142.27563 * 19 18 16 21 21 C 1.38096 * 120.40787 * 180.02562 * 20 19 18 22 22 C 1.38382 * 120.47992 * 359.92778 * 21 20 19 23 23 C 1.39630 * 119.38189 * 359.92921 * 22 21 20 24 24 C 1.38615 * 120.10711 * 322.00605 * 19 18 16 25 25 C 1.47619 * 120.10823 * 180.34211 * 23 22 21 26 26 O 1.21251 * 121.17105 * 168.60117 * 25 23 22 27 27 C 1.51473 * 117.65640 * 348.62446 * 25 23 22 28 28 C 1.53441 * 107.37292 * 42.48153 * 27 25 23 29 29 C 1.50454 * 119.04445 * 179.74793 * 22 21 20 30 30 H 1.08991 * 109.47327 * 294.44685 * 1 2 3 31 31 H 1.08998 * 109.46822 * 54.45004 * 1 2 3 32 32 H 1.08999 * 109.47250 * 174.44364 * 1 2 3 33 33 H 0.97002 * 119.99776 * 355.23309 * 7 6 4 34 34 H 1.09003 * 109.47133 * 95.21569 * 13 12 2 35 35 H 1.09005 * 109.46948 * 215.20990 * 13 12 2 36 36 H 1.09002 * 109.47082 * 335.21376 * 13 12 2 37 37 H 0.97005 * 120.00047 * 5.05103 * 18 16 14 38 38 H 1.07994 * 119.79928 * 0.05697 * 20 19 18 39 39 H 1.08005 * 119.76124 * 179.89383 * 21 20 19 40 40 H 1.08001 * 120.14034 * 0.03046 * 24 19 18 41 41 H 1.09003 * 109.87434 * 283.01788 * 27 25 23 42 42 H 1.08994 * 109.87702 * 161.95320 * 27 25 23 43 43 H 1.09000 * 109.48586 * 176.01888 * 28 27 25 44 44 H 1.08995 * 109.50324 * 55.96311 * 28 27 25 45 45 H 1.08996 * 109.12127 * 277.96449 * 29 22 21 46 46 H 1.09002 * 109.11416 * 37.10327 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.5718 -1.6412 -1.1341 6 6 1.8034 -0.1724 -2.4790 7 7 1.8818 -0.9345 -3.5480 8 14 1.3895 1.6408 -2.6529 9 1 1.1969 1.9691 -4.0884 10 1 0.1410 1.9374 -1.9056 11 1 2.5013 2.4574 -2.1032 12 7 2.0183 -0.6906 1.1963 13 6 1.6643 -2.0932 1.4281 14 6 2.7931 -0.0356 2.0834 15 8 3.0001 1.1525 1.9472 16 6 3.3971 -0.7718 3.2340 17 8 3.2710 -1.9761 3.3174 18 7 4.0820 -0.0989 4.1798 19 6 4.7363 -0.7970 5.1985 20 6 5.9715 -0.3579 5.6632 21 6 6.6237 -1.0433 6.6692 22 6 6.0570 -2.1746 7.2294 23 6 4.8157 -2.6186 6.7693 24 6 4.1536 -1.9259 5.7529 25 6 4.1930 -3.8193 7.3607 26 8 3.0382 -4.1065 7.1280 27 6 5.0472 -4.6794 8.2689 28 6 5.8487 -3.7345 9.1741 29 6 6.7984 -2.8996 8.3196 30 1 -0.3633 0.4253 0.9354 31 1 -0.3633 0.5975 -0.8361 32 1 -0.3634 -1.0228 -0.0995 33 1 2.1679 -1.8577 -3.4655 34 1 2.4612 -2.7357 1.0535 35 1 1.5330 -2.2628 2.4969 36 1 0.7355 -2.3245 0.9066 37 1 4.1209 0.8700 4.1534 38 1 6.4232 0.5247 5.2350 39 1 7.5833 -0.6941 7.0209 40 1 3.1929 -2.2697 5.3991 41 1 5.7277 -5.2865 7.6719 42 1 4.4107 -5.3230 8.8761 43 1 6.4242 -4.3195 9.8915 44 1 5.1647 -3.0749 9.7080 45 1 7.5437 -3.5552 7.8694 46 1 7.3014 -2.1705 8.9549 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131920017.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:58 Heat of formation + Delta-G solvation = -71.791090 kcal Electronic energy + Delta-G solvation = -29770.252604 eV Core-core repulsion = 25625.197023 eV Total energy + Delta-G solvation = -4145.055580 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.19537 -40.32526 -38.82534 -37.98013 -36.41233 -35.75250 -34.21811 -32.77580 -31.56978 -30.33398 -30.17849 -28.16537 -26.44484 -25.23648 -24.63722 -23.86661 -22.92606 -21.91227 -20.78064 -19.70710 -19.07911 -17.76526 -17.60145 -17.17956 -16.59247 -16.31870 -16.03708 -15.70290 -15.43744 -15.10482 -14.91190 -14.73127 -14.30448 -14.02335 -13.82817 -13.77038 -13.50530 -13.27686 -13.18255 -12.84877 -12.61314 -12.48500 -12.23161 -12.05892 -11.82463 -11.75414 -11.64109 -11.52629 -11.35599 -11.29197 -10.89557 -10.56070 -10.37325 -10.01052 -9.85849 -9.85289 -9.32089 -9.18568 -9.01364 -8.39653 -8.35639 -7.93996 -6.57307 -4.20584 0.37450 0.94320 1.69548 2.14848 2.51402 3.32953 3.36123 3.43252 3.55576 3.56781 3.68850 3.90196 4.20222 4.28560 4.40005 4.49229 4.57590 4.61352 4.70754 4.85505 4.95445 5.07875 5.14208 5.15209 5.24044 5.35876 5.39786 5.51563 5.61130 5.68133 5.83551 5.92188 5.99816 6.06180 6.08062 6.18267 6.24442 6.35126 6.44104 6.50515 6.64572 6.83607 6.88341 7.08713 7.21942 7.27025 7.65412 7.79702 8.08213 8.26593 8.40013 8.80416 9.47645 10.81276 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.022490 B = 0.002420 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.723203 B =11565.580943 C =12167.113538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.233 3.767 3 H 0.057 0.943 4 C -0.617 4.617 5 H 0.063 0.937 6 C 0.039 3.961 7 N -0.895 5.895 8 Si 1.040 2.960 9 H -0.282 1.282 10 H -0.273 1.273 11 H -0.278 1.278 12 N -0.545 5.545 13 C 0.087 3.913 14 C 0.496 3.504 15 O -0.538 6.538 16 C 0.508 3.492 17 O -0.495 6.495 18 N -0.653 5.653 19 C 0.132 3.868 20 C -0.105 4.105 21 C -0.116 4.116 22 C -0.049 4.049 23 C -0.154 4.154 24 C -0.059 4.059 25 C 0.398 3.602 26 O -0.447 6.447 27 C -0.164 4.164 28 C -0.114 4.114 29 C -0.085 4.085 30 H 0.029 0.971 31 H 0.067 0.933 32 H 0.053 0.947 33 H 0.269 0.731 34 H 0.057 0.943 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.423 0.577 38 H 0.134 0.866 39 H 0.134 0.866 40 H 0.149 0.851 41 H 0.103 0.897 42 H 0.094 0.906 43 H 0.081 0.919 44 H 0.070 0.930 45 H 0.085 0.915 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.997 -2.413 26.310 28.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.132 3.868 3 H 0.075 0.925 4 C -0.655 4.655 5 H 0.081 0.919 6 C -0.168 4.168 7 N -0.528 5.528 8 Si 0.867 3.133 9 H -0.208 1.208 10 H -0.199 1.199 11 H -0.204 1.204 12 N -0.275 5.275 13 C -0.056 4.056 14 C 0.277 3.723 15 O -0.417 6.417 16 C 0.291 3.709 17 O -0.368 6.368 18 N -0.301 5.301 19 C 0.038 3.962 20 C -0.125 4.125 21 C -0.134 4.134 22 C -0.050 4.050 23 C -0.155 4.155 24 C -0.079 4.079 25 C 0.275 3.725 26 O -0.321 6.321 27 C -0.201 4.201 28 C -0.151 4.151 29 C -0.122 4.122 30 H 0.048 0.952 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.262 0.738 38 H 0.152 0.848 39 H 0.152 0.848 40 H 0.166 0.834 41 H 0.121 0.879 42 H 0.113 0.887 43 H 0.099 0.901 44 H 0.089 0.911 45 H 0.103 0.897 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 8.917 -1.669 24.927 26.526 hybrid contribution 0.679 -0.804 0.874 1.368 sum 9.595 -2.473 25.801 27.639 Atomic orbital electron populations 1.22499 0.97991 1.01595 0.99851 1.19420 0.91008 0.94646 0.81757 0.92516 1.22119 1.42123 1.10492 0.90739 0.91878 1.25690 0.94022 1.05321 0.91745 1.70875 1.41304 1.08986 1.31586 0.84113 0.77514 0.75291 0.76365 1.20782 1.19924 1.20426 1.47998 1.45325 1.12822 1.21383 1.21926 1.01200 0.81054 1.01453 1.19589 0.81812 0.87195 0.83726 1.90709 1.61295 1.14382 1.75353 1.20861 0.79056 0.87729 0.83221 1.90746 1.55871 1.14165 1.75972 1.43204 1.50801 1.11494 1.24616 1.17650 0.92537 0.95169 0.90851 1.21187 0.92418 1.01165 0.97764 1.20861 1.00235 0.95314 0.97011 1.20036 0.93183 0.95087 0.96675 1.20146 0.96372 0.99047 0.99962 1.21525 1.00116 0.93519 0.92773 1.22733 0.87424 0.83960 0.78347 1.90564 1.18369 1.69568 1.53620 1.22316 1.00222 0.98719 0.98881 1.21501 0.98202 0.97803 0.97619 1.20479 0.97720 0.98967 0.95045 0.95211 0.91473 0.92820 0.92030 0.92471 0.90686 0.90998 0.73828 0.84792 0.84847 0.83363 0.87885 0.88725 0.90072 0.91114 0.89655 0.89833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.48 8.76 37.16 0.33 -3.16 16 2 C 0.23 5.62 2.21 -69.08 -0.15 5.47 16 3 H 0.06 1.45 5.51 -51.93 -0.29 1.17 16 4 C -0.62 -17.01 8.65 -34.44 -0.30 -17.31 16 5 H 0.06 1.88 7.79 -52.49 -0.41 1.47 16 6 C 0.04 1.10 5.33 -17.82 -0.09 1.01 16 7 N -0.89 -26.79 13.70 55.43 0.76 -26.03 16 8 Si 1.04 24.84 26.49 -169.99 -4.50 20.33 16 9 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.27 -5.96 5.64 56.52 0.32 -5.64 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 N -0.55 -11.84 2.75 -175.80 -0.48 -12.32 16 13 C 0.09 1.67 8.38 59.85 0.50 2.17 16 14 C 0.50 10.10 7.72 -11.63 -0.09 10.01 16 15 O -0.54 -11.74 15.84 5.49 0.09 -11.65 16 16 C 0.51 8.79 7.54 -11.63 -0.09 8.70 16 17 O -0.49 -9.14 10.99 5.48 0.06 -9.08 16 18 N -0.65 -8.98 5.31 -10.33 -0.05 -9.04 16 19 C 0.13 1.66 6.24 -83.79 -0.52 1.14 16 20 C -0.10 -1.00 9.95 -39.32 -0.39 -1.39 16 21 C -0.12 -0.91 9.64 -39.58 -0.38 -1.29 16 22 C -0.05 -0.41 5.78 -104.17 -0.60 -1.02 16 23 C -0.15 -1.76 5.82 -105.01 -0.61 -2.38 16 24 C -0.06 -0.81 8.24 -38.90 -0.32 -1.13 16 25 C 0.40 4.57 6.89 -30.10 -0.21 4.36 16 26 O -0.45 -6.82 17.25 5.58 0.10 -6.72 16 27 C -0.16 -1.14 6.19 -27.27 -0.17 -1.31 16 28 C -0.11 -0.56 5.90 -26.70 -0.16 -0.71 16 29 C -0.09 -0.43 5.70 -28.20 -0.16 -0.59 16 30 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 1.47 5.07 -51.93 -0.26 1.21 16 32 H 0.05 1.12 6.89 -51.93 -0.36 0.77 16 33 H 0.27 8.05 8.73 -40.82 -0.36 7.69 16 34 H 0.06 1.15 8.10 -51.93 -0.42 0.72 16 35 H 0.07 1.33 5.96 -51.93 -0.31 1.02 16 36 H 0.07 1.35 6.55 -51.93 -0.34 1.01 16 37 H 0.42 5.02 8.33 -40.82 -0.34 4.68 16 38 H 0.13 1.00 8.06 -52.49 -0.42 0.57 16 39 H 0.13 0.66 8.06 -52.48 -0.42 0.23 16 40 H 0.15 2.40 6.09 -52.49 -0.32 2.08 16 41 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 44 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.08 0.29 8.11 -51.93 -0.42 -0.13 16 LS Contribution 373.19 15.07 5.62 5.62 Total: -1.00 -33.82 373.19 -7.92 -41.74 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -6.08 Total: 4.57 kcal Atomic # 6 Polarization: 6.00 SS G_CDS: -3.42 Total: 2.58 kcal Atomic # 7 Polarization: -47.61 SS G_CDS: 0.22 Total: -47.39 kcal Atomic # 8 Polarization: -27.69 SS G_CDS: 0.24 Total: -27.45 kcal Atomic # 14 Polarization: 24.84 SS G_CDS: -4.50 Total: 20.33 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.82 -7.92 -41.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131920017.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.054 kcal (2) G-P(sol) polarization free energy of solvation -33.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds