Wall clock time and date at job start Wed Apr 1 2020 03:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34731 * 117.00084 * 2 1 4 4 O 1.21500 * 120.00153 * 0.02562 * 3 2 1 5 5 C 1.47540 * 120.00158 * 180.02562 * 3 2 1 6 6 C 1.40141 * 120.03632 * 0.02562 * 5 3 2 7 7 C 1.36359 * 120.62994 * 179.61811 * 6 5 3 8 8 C 1.39401 * 120.27250 * 0.56037 * 7 6 5 9 9 N 1.37719 * 132.86360 * 179.33267 * 8 7 6 10 10 H 0.96995 * 124.59254 * 359.97438 * 9 8 7 11 11 C 1.34728 * 110.80396 * 180.02562 * 9 8 7 12 12 C 1.37791 * 109.65216 * 0.02562 * 11 9 8 13 13 C 1.41743 * 126.94653 * 179.97438 * 12 11 9 14 14 O 1.21399 * 120.00298 * 180.02562 * 13 12 11 15 15 C 1.50700 * 120.00191 * 0.02562 * 13 12 11 16 16 N 1.46898 * 109.47448 * 179.97438 * 15 13 12 17 17 C 1.46896 * 111.00068 * 293.95614 * 16 15 13 18 18 C 1.46901 * 110.99960 * 169.99664 * 16 15 13 19 19 H 1.09002 * 109.47401 * 310.00169 * 18 16 15 20 20 C 1.53000 * 109.46769 * 70.00462 * 18 16 15 21 21 C 1.50699 * 109.47121 * 190.00198 * 18 16 15 22 22 H 1.07999 * 120.00019 * 0.02562 * 21 18 16 23 23 C 1.37877 * 120.00129 * 180.02562 * 21 18 16 24 24 N 1.31519 * 119.99723 * 359.97438 * 23 21 18 25 25 Si 1.86803 * 119.99900 * 179.97438 * 23 21 18 26 26 H 1.48501 * 109.47147 * 90.00197 * 25 23 21 27 27 H 1.48499 * 109.46797 * 209.99607 * 25 23 21 28 28 H 1.48500 * 109.47032 * 329.99738 * 25 23 21 29 29 C 1.40568 * 119.52643 * 359.59552 * 8 7 6 30 30 C 1.38811 * 120.23477 * 0.04817 * 29 8 7 31 31 H 1.09008 * 109.47051 * 299.99583 * 1 2 3 32 32 H 1.09001 * 109.47200 * 59.99235 * 1 2 3 33 33 H 1.09001 * 109.47506 * 179.97438 * 1 2 3 34 34 H 1.08008 * 119.68347 * 0.02562 * 6 5 3 35 35 H 1.08002 * 119.85875 * 179.89703 * 7 6 5 36 36 H 1.08007 * 125.17398 * 180.02562 * 11 9 8 37 37 H 1.09002 * 109.47195 * 59.99574 * 15 13 12 38 38 H 1.08998 * 109.46705 * 300.00045 * 15 13 12 39 39 H 1.08998 * 109.46919 * 296.04338 * 17 16 15 40 40 H 1.08996 * 109.47115 * 56.04331 * 17 16 15 41 41 H 1.09004 * 109.47181 * 176.04500 * 17 16 15 42 42 H 1.09001 * 109.47194 * 299.99524 * 20 18 16 43 43 H 1.08992 * 109.47399 * 59.99697 * 20 18 16 44 44 H 1.09004 * 109.46724 * 180.02562 * 20 18 16 45 45 H 0.97003 * 119.99231 * 179.97438 * 24 23 21 46 46 H 1.07994 * 120.29708 * 180.12894 * 30 29 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2005 0.0000 4 8 1.4020 2.2195 0.0005 5 6 3.5371 1.2777 -0.0006 6 6 4.3011 0.1029 -0.0017 7 6 5.6634 0.1601 -0.0100 8 6 6.3150 1.3925 -0.0058 9 7 7.6453 1.7488 -0.0002 10 1 8.3838 1.1200 0.0022 11 6 7.7817 3.0892 0.0027 12 6 6.5376 3.6815 -0.0004 13 6 6.2553 5.0706 0.0017 14 8 5.1042 5.4561 -0.0010 15 6 7.3842 6.0689 0.0073 16 7 6.8336 7.4308 0.0079 17 6 6.1242 7.7124 -1.2472 18 6 7.8876 8.4246 0.2515 19 1 8.4661 8.1334 1.1282 20 6 8.8101 8.4985 -0.9668 21 6 7.2603 9.7741 0.4892 22 1 6.1861 9.8825 0.4625 23 6 8.0577 10.8704 0.7408 24 7 9.3659 10.7382 0.7739 25 14 7.2802 12.5432 1.0348 26 1 7.0122 12.7166 2.4851 27 1 8.2063 13.6077 0.5719 28 1 6.0040 12.6352 0.2810 29 6 5.5576 2.5766 -0.0016 30 6 4.1707 2.5192 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5140 -0.8899 33 1 -0.3634 -1.0276 -0.0005 34 1 3.8060 -0.8571 -0.0025 35 1 6.2400 -0.7531 -0.0091 36 1 8.7229 3.6188 0.0068 37 1 7.9995 5.9265 -0.8810 38 1 7.9940 5.9227 0.8989 39 1 6.8298 7.6841 -2.0775 40 1 5.3495 6.9617 -1.4030 41 1 5.6670 8.7004 -1.1924 42 1 9.2639 7.5225 -1.1388 43 1 8.2317 8.7898 -1.8435 44 1 9.5925 9.2357 -0.7859 45 1 9.9269 11.5096 0.9505 46 1 3.5877 3.4283 0.0007 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161544500.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:28 Heat of formation + Delta-G solvation = -42.607217 kcal Electronic energy + Delta-G solvation = -29228.900726 eV Core-core repulsion = 25085.110653 eV Total energy + Delta-G solvation = -4143.790073 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.86377 -40.46731 -38.90513 -37.35357 -36.45972 -36.43263 -32.65661 -32.46863 -30.63012 -30.26322 -28.76638 -27.86306 -27.14840 -25.18493 -24.44179 -24.20755 -22.64583 -22.49837 -21.04380 -19.47381 -18.80242 -18.05727 -17.82170 -17.12935 -16.52626 -16.33001 -16.04969 -15.61275 -15.30112 -14.91378 -14.64389 -14.38364 -14.29955 -14.16927 -13.98457 -13.67488 -13.55841 -13.12364 -12.95614 -12.88317 -12.43784 -12.37784 -12.28632 -11.96442 -11.51996 -11.33761 -11.01949 -10.97329 -10.87498 -10.75004 -10.70984 -10.63418 -10.42855 -10.03554 -9.98421 -9.93331 -9.13087 -8.77723 -8.73870 -8.33787 -8.10284 -7.06514 -5.97175 -3.99222 0.39923 0.87724 1.62436 2.37308 2.46156 2.61467 3.26508 3.36175 3.41923 3.47224 3.68557 4.23675 4.31675 4.46478 4.53041 4.56153 4.80300 4.85952 4.87956 4.93931 5.08283 5.16484 5.20901 5.26973 5.29917 5.35640 5.75233 5.85587 5.88092 5.93798 6.01302 6.04362 6.16211 6.19788 6.37220 6.42259 6.48857 6.63987 6.71041 6.84142 6.96002 7.03339 7.12434 7.47035 7.59004 7.74054 7.89935 8.09746 8.22053 8.42402 8.64267 9.07627 9.65582 11.10202 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.016256 B = 0.002318 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.004138 B =12074.481332 C =13518.195080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.358 6.358 3 C 0.511 3.489 4 O -0.502 6.502 5 C -0.153 4.153 6 C -0.053 4.053 7 C -0.135 4.135 8 C 0.109 3.891 9 N -0.568 5.568 10 H 0.423 0.577 11 C 0.125 3.875 12 C -0.241 4.241 13 C 0.414 3.586 14 O -0.439 6.439 15 C 0.011 3.989 16 N -0.521 5.521 17 C 0.031 3.969 18 C 0.209 3.791 19 H 0.038 0.962 20 C -0.173 4.173 21 C -0.493 4.493 22 H 0.064 0.936 23 C 0.056 3.944 24 N -0.898 5.898 25 Si 0.897 3.103 26 H -0.281 1.281 27 H -0.289 1.289 28 H -0.274 1.274 29 C -0.079 4.079 30 C 0.014 3.986 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.101 0.899 34 H 0.141 0.859 35 H 0.130 0.870 36 H 0.191 0.809 37 H 0.054 0.946 38 H 0.096 0.904 39 H 0.013 0.987 40 H 0.057 0.943 41 H 0.071 0.929 42 H 0.005 0.995 43 H 0.033 0.967 44 H 0.089 0.911 45 H 0.259 0.741 46 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.481 -27.678 -2.946 28.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.275 6.275 3 C 0.356 3.644 4 O -0.390 6.390 5 C -0.155 4.155 6 C -0.072 4.072 7 C -0.155 4.155 8 C 0.002 3.998 9 N -0.168 5.168 10 H 0.261 0.739 11 C -0.008 4.008 12 C -0.249 4.249 13 C 0.291 3.709 14 O -0.314 6.314 15 C -0.118 4.118 16 N -0.244 5.244 17 C -0.118 4.118 18 C 0.103 3.897 19 H 0.056 0.944 20 C -0.232 4.232 21 C -0.532 4.532 22 H 0.082 0.918 23 C -0.144 4.144 24 N -0.538 5.538 25 Si 0.725 3.275 26 H -0.207 1.207 27 H -0.215 1.215 28 H -0.199 1.199 29 C -0.083 4.083 30 C -0.004 4.004 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.119 0.881 34 H 0.159 0.841 35 H 0.148 0.852 36 H 0.208 0.792 37 H 0.072 0.928 38 H 0.114 0.886 39 H 0.031 0.969 40 H 0.076 0.924 41 H 0.089 0.911 42 H 0.024 0.976 43 H 0.052 0.948 44 H 0.107 0.893 45 H 0.069 0.931 46 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -5.425 -27.081 -2.526 27.734 hybrid contribution 0.723 0.590 -0.487 1.053 sum -4.702 -26.490 -3.013 27.073 Atomic orbital electron populations 1.23271 0.76049 1.03599 1.02791 1.86519 1.23493 1.32801 1.84697 1.21091 0.89040 0.81399 0.72871 1.90886 1.66702 1.35902 1.45533 1.18801 0.88952 0.94432 1.13316 1.20726 0.92606 0.97873 0.96012 1.19711 0.94165 0.94406 1.07202 1.18517 0.83447 0.95273 1.02577 1.41438 1.06566 1.07241 1.61575 0.73949 1.22683 0.99688 0.82272 0.96121 1.20269 0.91552 0.95018 1.18077 1.20436 0.90930 0.86842 0.72683 1.90513 1.23341 1.82034 1.35520 1.22355 0.95430 0.92090 1.01925 1.62167 1.28801 0.99420 1.34028 1.22348 0.97366 1.02295 0.89746 1.19367 0.87059 0.89823 0.93405 0.94389 1.22418 1.02293 0.98670 0.99809 1.21122 0.93536 0.91727 1.46823 0.91832 1.24921 0.94847 0.99061 0.95600 1.69883 1.03145 1.30324 1.50410 0.86506 0.79031 0.83454 0.78478 1.20718 1.21464 1.19905 1.18774 0.92501 0.91628 1.05426 1.20860 0.92522 0.97402 0.89631 0.91770 0.91799 0.88060 0.84127 0.85206 0.79203 0.92788 0.88568 0.96872 0.92387 0.91051 0.97635 0.94816 0.89288 0.93124 0.83164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.57 101.05 1.07 1.34 16 2 O -0.36 -3.65 9.80 -40.58 -0.40 -4.05 16 3 C 0.51 6.59 7.89 34.52 0.27 6.86 16 4 O -0.50 -8.06 16.13 -19.27 -0.31 -8.38 16 5 C -0.15 -1.85 5.87 -104.97 -0.62 -2.47 16 6 C -0.05 -0.47 9.53 -39.54 -0.38 -0.85 16 7 C -0.13 -1.06 10.00 -39.83 -0.40 -1.46 16 8 C 0.11 1.05 7.24 -83.91 -0.61 0.44 16 9 N -0.57 -3.91 5.92 -10.26 -0.06 -3.97 16 10 H 0.42 1.22 8.96 -40.82 -0.37 0.86 16 11 C 0.13 1.09 11.31 -16.44 -0.19 0.90 16 12 C -0.24 -3.21 6.12 -104.86 -0.64 -3.85 16 13 C 0.41 7.00 6.64 -32.97 -0.22 6.78 16 14 O -0.44 -9.03 13.97 5.45 0.08 -8.95 16 15 C 0.01 0.20 4.30 -4.98 -0.02 0.18 16 16 N -0.52 -11.62 4.44 -237.73 -1.06 -12.68 16 17 C 0.03 0.66 8.46 60.06 0.51 1.17 16 18 C 0.21 5.24 2.31 -68.86 -0.16 5.08 16 19 H 0.04 1.02 7.93 -51.93 -0.41 0.61 16 20 C -0.17 -4.07 8.22 37.16 0.31 -3.76 16 21 C -0.49 -13.75 7.97 -34.44 -0.27 -14.02 16 22 H 0.06 1.82 7.10 -52.49 -0.37 1.45 16 23 C 0.06 1.56 5.30 -17.82 -0.09 1.46 16 24 N -0.90 -25.44 11.32 55.43 0.63 -24.81 16 25 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 26 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 27 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 28 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 29 C -0.08 -1.05 6.23 -104.95 -0.65 -1.70 16 30 C 0.01 0.21 9.34 -38.94 -0.36 -0.16 16 31 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.14 0.94 7.58 -52.48 -0.40 0.54 16 35 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 36 H 0.19 1.03 7.91 -52.48 -0.42 0.62 16 37 H 0.05 0.85 7.06 -51.93 -0.37 0.49 16 38 H 0.10 1.53 7.93 -51.93 -0.41 1.12 16 39 H 0.01 0.27 6.21 -51.93 -0.32 -0.06 16 40 H 0.06 1.20 5.82 -51.93 -0.30 0.90 16 41 H 0.07 1.64 6.86 -51.93 -0.36 1.28 16 42 H 0.00 0.10 6.91 -51.93 -0.36 -0.26 16 43 H 0.03 0.78 6.33 -51.93 -0.33 0.45 16 44 H 0.09 2.32 6.07 -51.93 -0.32 2.01 16 45 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 46 H 0.15 2.48 6.97 -52.49 -0.37 2.12 16 LS Contribution 380.17 15.07 5.73 5.73 Total: -1.00 -35.67 380.17 -8.79 -44.46 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -5.92 Total: -0.08 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: -2.46 Total: -4.05 kcal Atomic # 7 Polarization: -40.96 SS G_CDS: -0.49 Total: -41.45 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: -0.63 Total: -21.37 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.67 -8.79 -44.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161544500.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.852 kcal (2) G-P(sol) polarization free energy of solvation -35.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds