Wall clock time and date at job start Wed Apr 1 2020 03:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34731 * 117.00084 * 2 1 4 4 O 1.21500 * 120.00153 * 0.02562 * 3 2 1 5 5 C 1.47540 * 120.00158 * 180.02562 * 3 2 1 6 6 C 1.40141 * 120.03632 * 0.02562 * 5 3 2 7 7 C 1.36359 * 120.62994 * 179.61811 * 6 5 3 8 8 C 1.39401 * 120.27250 * 0.56037 * 7 6 5 9 9 N 1.37719 * 132.86360 * 179.33267 * 8 7 6 10 10 H 0.96995 * 124.59254 * 359.97438 * 9 8 7 11 11 C 1.34728 * 110.80396 * 180.02562 * 9 8 7 12 12 C 1.37791 * 109.65216 * 0.02562 * 11 9 8 13 13 C 1.41743 * 126.94653 * 179.97438 * 12 11 9 14 14 O 1.21399 * 120.00298 * 180.02562 * 13 12 11 15 15 C 1.50700 * 120.00191 * 0.02562 * 13 12 11 16 16 N 1.46898 * 109.47448 * 179.97438 * 15 13 12 17 17 C 1.46896 * 111.00068 * 293.95614 * 16 15 13 18 18 C 1.46901 * 110.99960 * 169.99664 * 16 15 13 19 19 H 1.09002 * 109.47401 * 310.00169 * 18 16 15 20 20 C 1.53000 * 109.46769 * 70.00462 * 18 16 15 21 21 C 1.50699 * 109.47121 * 190.00198 * 18 16 15 22 22 H 1.07999 * 120.00019 * 0.02562 * 21 18 16 23 23 C 1.37877 * 120.00129 * 180.02562 * 21 18 16 24 24 N 1.31519 * 119.99723 * 359.97438 * 23 21 18 25 25 Si 1.86803 * 119.99900 * 179.97438 * 23 21 18 26 26 H 1.48501 * 109.47147 * 90.00197 * 25 23 21 27 27 H 1.48499 * 109.46797 * 209.99607 * 25 23 21 28 28 H 1.48500 * 109.47032 * 329.99738 * 25 23 21 29 29 C 1.40568 * 119.52643 * 359.59552 * 8 7 6 30 30 C 1.38811 * 120.23477 * 0.04817 * 29 8 7 31 31 H 1.09008 * 109.47051 * 299.99583 * 1 2 3 32 32 H 1.09001 * 109.47200 * 59.99235 * 1 2 3 33 33 H 1.09001 * 109.47506 * 179.97438 * 1 2 3 34 34 H 1.08008 * 119.68347 * 0.02562 * 6 5 3 35 35 H 1.08002 * 119.85875 * 179.89703 * 7 6 5 36 36 H 1.08007 * 125.17398 * 180.02562 * 11 9 8 37 37 H 1.09002 * 109.47195 * 59.99574 * 15 13 12 38 38 H 1.08998 * 109.46705 * 300.00045 * 15 13 12 39 39 H 1.08998 * 109.46919 * 296.04338 * 17 16 15 40 40 H 1.08996 * 109.47115 * 56.04331 * 17 16 15 41 41 H 1.09004 * 109.47181 * 176.04500 * 17 16 15 42 42 H 1.09001 * 109.47194 * 299.99524 * 20 18 16 43 43 H 1.08992 * 109.47399 * 59.99697 * 20 18 16 44 44 H 1.09004 * 109.46724 * 180.02562 * 20 18 16 45 45 H 0.97003 * 119.99231 * 179.97438 * 24 23 21 46 46 H 1.07994 * 120.29708 * 180.12894 * 30 29 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2005 0.0000 4 8 1.4020 2.2195 0.0005 5 6 3.5371 1.2777 -0.0006 6 6 4.3011 0.1029 -0.0017 7 6 5.6634 0.1601 -0.0100 8 6 6.3150 1.3925 -0.0058 9 7 7.6453 1.7488 -0.0002 10 1 8.3838 1.1200 0.0022 11 6 7.7817 3.0892 0.0027 12 6 6.5376 3.6815 -0.0004 13 6 6.2553 5.0706 0.0017 14 8 5.1042 5.4561 -0.0010 15 6 7.3842 6.0689 0.0073 16 7 6.8336 7.4308 0.0079 17 6 6.1242 7.7124 -1.2472 18 6 7.8876 8.4246 0.2515 19 1 8.4661 8.1334 1.1282 20 6 8.8101 8.4985 -0.9668 21 6 7.2603 9.7741 0.4892 22 1 6.1861 9.8825 0.4625 23 6 8.0577 10.8704 0.7408 24 7 9.3659 10.7382 0.7739 25 14 7.2802 12.5432 1.0348 26 1 7.0122 12.7166 2.4851 27 1 8.2063 13.6077 0.5719 28 1 6.0040 12.6352 0.2810 29 6 5.5576 2.5766 -0.0016 30 6 4.1707 2.5192 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5140 -0.8899 33 1 -0.3634 -1.0276 -0.0005 34 1 3.8060 -0.8571 -0.0025 35 1 6.2400 -0.7531 -0.0091 36 1 8.7229 3.6188 0.0068 37 1 7.9995 5.9265 -0.8810 38 1 7.9940 5.9227 0.8989 39 1 6.8298 7.6841 -2.0775 40 1 5.3495 6.9617 -1.4030 41 1 5.6670 8.7004 -1.1924 42 1 9.2639 7.5225 -1.1388 43 1 8.2317 8.7898 -1.8435 44 1 9.5925 9.2357 -0.7859 45 1 9.9269 11.5096 0.9505 46 1 3.5877 3.4283 0.0007 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161544500.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:27 Heat of formation + Delta-G solvation = -66.891079 kcal Electronic energy + Delta-G solvation = -29229.953753 eV Core-core repulsion = 25085.110653 eV Total energy + Delta-G solvation = -4144.843100 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.67139 -41.41625 -40.26528 -38.16015 -38.12647 -37.41784 -34.66682 -33.36656 -31.48368 -31.44537 -30.39420 -28.65513 -28.46919 -27.24014 -25.95005 -25.12089 -23.80840 -23.33953 -21.95389 -21.13173 -19.91528 -19.05234 -18.68375 -18.15845 -18.03894 -17.42274 -17.16459 -17.00342 -16.44065 -16.28701 -16.04835 -15.53207 -15.44673 -15.41084 -14.84452 -14.80941 -14.65449 -14.45901 -14.39646 -14.12987 -13.75456 -13.52893 -13.32518 -13.03919 -12.86836 -12.77992 -12.74329 -12.55289 -12.48947 -12.19789 -12.10880 -12.01531 -11.86992 -11.84986 -11.72144 -10.96852 -10.85750 -10.46465 -10.35433 -9.53537 -8.94655 -8.75820 -8.09736 -6.18190 -0.53242 0.14136 0.63701 1.41294 1.42420 1.46335 1.52907 1.63554 1.96243 2.23402 2.43892 2.79340 3.14879 3.19116 3.54627 3.62199 3.71644 3.82285 4.02747 4.12885 4.27375 4.31423 4.31831 4.46125 4.48279 4.53914 4.55899 4.62624 4.69803 4.73925 4.86857 4.87977 4.96023 5.03471 5.14428 5.15485 5.23828 5.25641 5.30353 5.34922 5.45445 5.56002 5.74333 5.84760 5.86518 6.23560 6.45784 6.51037 6.64224 6.73647 6.93555 7.01101 7.50211 8.95853 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.016256 B = 0.002318 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.004138 B =12074.481332 C =13518.195080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.349 6.349 3 C 0.510 3.490 4 O -0.548 6.548 5 C -0.159 4.159 6 C -0.051 4.051 7 C -0.109 4.109 8 C 0.111 3.889 9 N -0.541 5.541 10 H 0.449 0.551 11 C 0.181 3.819 12 C -0.303 4.303 13 C 0.418 3.582 14 O -0.500 6.500 15 C 0.011 3.989 16 N -0.545 5.545 17 C 0.044 3.956 18 C 0.215 3.785 19 H 0.018 0.982 20 C -0.158 4.158 21 C -0.516 4.516 22 H 0.043 0.957 23 C 0.015 3.985 24 N -0.915 5.915 25 Si 0.953 3.047 26 H -0.278 1.278 27 H -0.279 1.279 28 H -0.277 1.277 29 C -0.103 4.103 30 C -0.025 4.025 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.142 0.858 34 H 0.171 0.829 35 H 0.180 0.820 36 H 0.233 0.767 37 H 0.080 0.920 38 H 0.113 0.887 39 H 0.024 0.976 40 H 0.059 0.941 41 H 0.045 0.955 42 H 0.039 0.961 43 H 0.027 0.973 44 H 0.063 0.937 45 H 0.262 0.738 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.855 -31.628 -3.207 31.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.265 6.265 3 C 0.357 3.643 4 O -0.440 6.440 5 C -0.161 4.161 6 C -0.071 4.071 7 C -0.129 4.129 8 C 0.004 3.996 9 N -0.142 5.142 10 H 0.292 0.708 11 C 0.044 3.956 12 C -0.311 4.311 13 C 0.300 3.700 14 O -0.380 6.380 15 C -0.118 4.118 16 N -0.268 5.268 17 C -0.105 4.105 18 C 0.109 3.891 19 H 0.036 0.964 20 C -0.218 4.218 21 C -0.554 4.554 22 H 0.062 0.938 23 C -0.183 4.183 24 N -0.555 5.555 25 Si 0.779 3.221 26 H -0.204 1.204 27 H -0.204 1.204 28 H -0.202 1.202 29 C -0.107 4.107 30 C -0.045 4.045 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.160 0.840 34 H 0.188 0.812 35 H 0.198 0.802 36 H 0.250 0.750 37 H 0.098 0.902 38 H 0.131 0.869 39 H 0.042 0.958 40 H 0.078 0.922 41 H 0.064 0.936 42 H 0.058 0.942 43 H 0.047 0.953 44 H 0.082 0.918 45 H 0.071 0.929 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -2.762 -31.115 -2.790 31.362 hybrid contribution -0.070 1.634 -0.390 1.682 sum -2.832 -29.481 -3.180 29.787 Atomic orbital electron populations 1.23607 0.74416 1.06104 1.02370 1.86507 1.25059 1.30984 1.83937 1.21423 0.89609 0.81505 0.71752 1.90861 1.67740 1.37560 1.47846 1.18925 0.88717 0.95023 1.13407 1.21051 0.93217 0.97468 0.95327 1.20218 0.93790 0.95301 1.03558 1.18649 0.84191 0.94646 1.02076 1.41436 1.06386 1.07138 1.59270 0.70768 1.23195 0.99250 0.82751 0.90387 1.19990 0.93923 0.93372 1.23832 1.20619 0.89769 0.88525 0.71073 1.90504 1.25139 1.83004 1.39337 1.22497 0.96150 0.89371 1.03752 1.61965 1.28729 1.01451 1.34671 1.22169 0.97505 1.00822 0.89960 1.19132 0.87466 0.89319 0.93214 0.96417 1.22198 1.01055 0.99762 0.98745 1.21354 0.92785 0.93814 1.47467 0.93834 1.25567 0.95383 1.01999 0.95387 1.69971 1.03806 1.31175 1.50538 0.85638 0.78213 0.79937 0.78295 1.20379 1.20402 1.20205 1.18959 0.92310 0.93503 1.05949 1.20615 0.93455 0.96779 0.93606 0.92316 0.92272 0.83967 0.81176 0.80239 0.75043 0.90243 0.86927 0.95773 0.92244 0.93643 0.94206 0.95345 0.91784 0.92904 0.87738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.57 113.37 1.20 1.59 16 2 O -0.35 -6.91 9.80 -56.42 -0.55 -7.47 16 3 C 0.51 13.92 7.89 70.28 0.55 14.48 16 4 O -0.55 -19.50 16.13 19.84 0.32 -19.18 16 5 C -0.16 -3.96 5.87 -20.09 -0.12 -4.08 16 6 C -0.05 -0.78 9.53 22.29 0.21 -0.56 16 7 C -0.11 -1.20 10.00 22.11 0.22 -0.98 16 8 C 0.11 1.76 7.24 39.07 0.28 2.05 16 9 N -0.54 -4.57 5.92 -186.37 -1.10 -5.68 16 10 H 0.45 -0.48 8.96 -92.71 -0.83 -1.31 16 11 C 0.18 2.37 11.31 84.14 0.95 3.32 16 12 C -0.30 -7.88 6.12 -20.02 -0.12 -8.01 16 13 C 0.42 14.64 6.64 26.55 0.18 14.81 16 14 O -0.50 -22.46 13.97 -3.40 -0.05 -22.51 16 15 C 0.01 0.37 4.30 85.56 0.37 0.74 16 16 N -0.54 -24.95 4.44 -906.06 -4.02 -28.97 16 17 C 0.04 1.96 8.46 127.69 1.08 3.04 16 18 C 0.22 10.96 2.31 44.17 0.10 11.06 16 19 H 0.02 0.97 7.93 -2.39 -0.02 0.95 16 20 C -0.16 -7.38 8.22 71.98 0.59 -6.79 16 21 C -0.52 -29.62 7.97 25.60 0.20 -29.42 16 22 H 0.04 2.62 7.10 -2.91 -0.02 2.59 16 23 C 0.02 0.86 5.30 84.65 0.45 1.31 16 24 N -0.91 -52.17 11.32 21.45 0.24 -51.92 16 25 Si 0.95 45.40 29.54 68.60 2.03 47.43 16 26 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 27 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 28 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 29 C -0.10 -2.75 6.23 -20.07 -0.13 -2.87 16 30 C -0.03 -0.79 9.34 22.68 0.21 -0.58 16 31 H 0.06 0.90 8.14 -2.38 -0.02 0.89 16 32 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.14 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.17 1.55 7.58 -2.91 -0.02 1.52 16 35 H 0.18 0.28 8.06 -2.91 -0.02 0.26 16 36 H 0.23 1.07 7.91 -2.91 -0.02 1.04 16 37 H 0.08 2.30 7.06 -2.39 -0.02 2.28 16 38 H 0.11 3.42 7.93 -2.39 -0.02 3.40 16 39 H 0.02 1.00 6.21 -2.39 -0.01 0.98 16 40 H 0.06 2.63 5.82 -2.39 -0.01 2.62 16 41 H 0.04 2.21 6.86 -2.39 -0.02 2.19 16 42 H 0.04 1.53 6.91 -2.39 -0.02 1.51 16 43 H 0.03 1.31 6.33 -2.39 -0.02 1.29 16 44 H 0.06 3.33 6.07 -2.39 -0.01 3.31 16 45 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 46 H 0.10 4.11 6.97 -2.91 -0.02 4.09 16 Total: -1.00 -86.64 380.17 3.31 -83.33 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: 0.21 Total: 5.86 kcal Atomic # 6 Polarization: -7.12 SS G_CDS: 6.24 Total: -0.88 kcal Atomic # 7 Polarization: -81.69 SS G_CDS: -4.88 Total: -86.57 kcal Atomic # 8 Polarization: -48.88 SS G_CDS: -0.28 Total: -49.16 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -86.64 3.31 -83.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161544500.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.443 kcal (2) G-P(sol) polarization free energy of solvation -86.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds