Wall clock time and date at job start Wed Apr 1 2020 03:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34747 * 116.99996 * 2 1 4 4 O 1.21490 * 119.99721 * 359.97438 * 3 2 1 5 5 C 1.47545 * 119.99962 * 179.97438 * 3 2 1 6 6 C 1.40128 * 120.03709 * 0.02562 * 5 3 2 7 7 C 1.36358 * 120.62596 * 179.61841 * 6 5 3 8 8 C 1.39410 * 120.27516 * 0.55992 * 7 6 5 9 9 N 1.37715 * 132.86125 * 179.33338 * 8 7 6 10 10 H 0.96989 * 124.59817 * 359.97438 * 9 8 7 11 11 C 1.34731 * 110.79963 * 180.02562 * 9 8 7 12 12 C 1.37797 * 109.64978 * 359.97438 * 11 9 8 13 13 C 1.41755 * 126.94364 * 179.97438 * 12 11 9 14 14 O 1.21398 * 119.99976 * 180.02562 * 13 12 11 15 15 C 1.50696 * 119.99875 * 0.02562 * 13 12 11 16 16 N 1.46898 * 109.47098 * 180.02562 * 15 13 12 17 17 C 1.46904 * 111.00077 * 66.04937 * 16 15 13 18 18 C 1.46899 * 111.00210 * 190.00199 * 16 15 13 19 19 H 1.09000 * 109.47162 * 54.99907 * 18 16 15 20 20 C 1.53006 * 109.47163 * 294.99946 * 18 16 15 21 21 C 1.50699 * 109.47244 * 175.00159 * 18 16 15 22 22 H 1.08003 * 120.00271 * 0.02562 * 21 18 16 23 23 C 1.37879 * 120.00161 * 179.97438 * 21 18 16 24 24 N 1.31509 * 119.99895 * 0.02562 * 23 21 18 25 25 Si 1.86803 * 120.00268 * 179.97438 * 23 21 18 26 26 H 1.48498 * 109.46680 * 60.00301 * 25 23 21 27 27 H 1.48492 * 109.47298 * 180.02562 * 25 23 21 28 28 H 1.48506 * 109.46944 * 300.00817 * 25 23 21 29 29 C 1.40567 * 119.52247 * 359.59948 * 8 7 6 30 30 C 1.38809 * 120.23258 * 0.03834 * 29 8 7 31 31 H 1.08998 * 109.47802 * 300.00121 * 1 2 3 32 32 H 1.09010 * 109.47085 * 60.00112 * 1 2 3 33 33 H 1.09005 * 109.47190 * 179.97438 * 1 2 3 34 34 H 1.08003 * 119.68730 * 359.97438 * 6 5 3 35 35 H 1.08006 * 119.86041 * 179.89502 * 7 6 5 36 36 H 1.08005 * 125.17785 * 180.02562 * 11 9 8 37 37 H 1.08999 * 109.46769 * 60.00414 * 15 13 12 38 38 H 1.08997 * 109.47560 * 300.00352 * 15 13 12 39 39 H 1.08997 * 109.47312 * 183.95625 * 17 16 15 40 40 H 1.09002 * 109.46704 * 303.95118 * 17 16 15 41 41 H 1.08998 * 109.47187 * 63.95226 * 17 16 15 42 42 H 1.09001 * 109.47002 * 59.99764 * 20 18 16 43 43 H 1.08993 * 109.46955 * 180.02562 * 20 18 16 44 44 H 1.09000 * 109.47050 * 300.00030 * 20 18 16 45 45 H 0.97006 * 120.00358 * 179.97438 * 24 23 21 46 46 H 1.08000 * 120.29459 * 180.12458 * 30 29 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0637 1.2006 0.0000 4 8 1.4019 2.2195 -0.0005 5 6 3.5371 1.2778 0.0006 6 6 4.3010 0.1031 0.0006 7 6 5.6634 0.1604 -0.0067 8 6 6.3150 1.3929 -0.0025 9 7 7.6453 1.7492 0.0040 10 1 8.3838 1.1205 0.0072 11 6 7.7815 3.0896 0.0065 12 6 6.5373 3.6818 0.0010 13 6 6.2550 5.0710 0.0020 14 8 5.1038 5.4564 -0.0029 15 6 7.3839 6.0693 0.0090 16 7 6.8332 7.4311 0.0092 17 6 6.1141 7.7080 1.2600 18 6 7.8889 8.4260 -0.2223 19 1 8.4175 8.1868 -1.1450 20 6 8.8733 8.4071 0.9489 21 6 7.2717 9.7959 -0.3376 22 1 6.2021 9.9157 -0.2475 23 6 8.0725 10.8966 -0.5571 24 7 9.3749 10.7509 -0.6664 25 14 7.3074 12.5947 -0.7008 26 1 6.5864 12.9205 0.5559 27 1 8.3746 13.6003 -0.9347 28 1 6.3527 12.6128 -1.8382 29 6 5.5574 2.5769 0.0007 30 6 4.1706 2.5193 0.0006 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5139 -0.8901 33 1 -0.3634 -1.0277 -0.0005 34 1 3.8061 -0.8568 0.0006 35 1 6.2401 -0.7528 -0.0049 36 1 8.7227 3.6193 0.0111 37 1 8.0005 5.9265 -0.8784 38 1 7.9923 5.9236 0.9015 39 1 5.6573 8.6961 1.2053 40 1 5.3382 6.9567 1.4069 41 1 6.8132 7.6766 2.0956 42 1 9.3197 7.4162 1.0324 43 1 9.6563 9.1455 0.7773 44 1 8.3446 8.6463 1.8717 45 1 9.9384 11.5252 -0.8212 46 1 3.5875 3.4284 0.0011 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161544621.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:32 Heat of formation + Delta-G solvation = -42.573691 kcal Electronic energy + Delta-G solvation = -29236.389341 eV Core-core repulsion = 25092.600722 eV Total energy + Delta-G solvation = -4143.788619 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.86351 -40.46750 -38.90598 -37.35372 -36.46132 -36.43584 -32.65236 -32.46726 -30.62982 -30.25211 -28.75749 -27.86369 -27.20220 -25.14293 -24.43092 -24.20509 -22.65033 -22.50603 -21.04575 -19.49059 -18.78956 -18.05536 -17.82121 -17.12909 -16.52605 -16.32232 -16.04508 -15.63585 -15.29876 -14.90959 -14.65362 -14.38048 -14.28800 -14.16601 -13.98442 -13.66621 -13.55838 -13.11853 -12.98192 -12.88490 -12.43396 -12.36007 -12.28177 -11.96437 -11.49849 -11.33796 -11.01939 -10.98881 -10.87594 -10.74246 -10.71008 -10.66651 -10.44290 -10.04801 -9.97099 -9.92947 -9.10659 -8.77850 -8.73847 -8.34480 -8.10212 -7.06288 -5.97517 -3.99865 0.39964 0.87765 1.62518 2.37321 2.46175 2.61520 3.26583 3.37716 3.40665 3.45486 3.68614 4.23778 4.31718 4.46202 4.53037 4.56161 4.80340 4.85959 4.88046 4.93941 5.08297 5.16528 5.21246 5.27152 5.29981 5.35346 5.75245 5.85699 5.88573 5.94269 6.01406 6.04437 6.16239 6.19814 6.37510 6.43055 6.50636 6.64029 6.71045 6.83932 6.96081 7.04954 7.12093 7.49141 7.58975 7.74539 7.88317 8.09534 8.21116 8.42413 8.64467 9.06395 9.64887 11.09821 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.016442 B = 0.002315 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.529292 B =12089.662379 C =13557.108229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.358 6.358 3 C 0.511 3.489 4 O -0.502 6.502 5 C -0.153 4.153 6 C -0.053 4.053 7 C -0.135 4.135 8 C 0.109 3.891 9 N -0.568 5.568 10 H 0.423 0.577 11 C 0.125 3.875 12 C -0.241 4.241 13 C 0.414 3.586 14 O -0.440 6.440 15 C 0.011 3.989 16 N -0.521 5.521 17 C 0.031 3.969 18 C 0.210 3.790 19 H 0.039 0.961 20 C -0.173 4.173 21 C -0.496 4.496 22 H 0.063 0.937 23 C 0.057 3.943 24 N -0.897 5.897 25 Si 0.897 3.103 26 H -0.278 1.278 27 H -0.289 1.289 28 H -0.276 1.276 29 C -0.079 4.079 30 C 0.014 3.986 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.101 0.899 34 H 0.141 0.859 35 H 0.130 0.870 36 H 0.191 0.809 37 H 0.096 0.904 38 H 0.055 0.945 39 H 0.072 0.928 40 H 0.057 0.943 41 H 0.012 0.988 42 H 0.006 0.994 43 H 0.089 0.911 44 H 0.031 0.969 45 H 0.260 0.740 46 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.489 -27.703 2.601 28.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.275 6.275 3 C 0.356 3.644 4 O -0.390 6.390 5 C -0.155 4.155 6 C -0.072 4.072 7 C -0.155 4.155 8 C 0.002 3.998 9 N -0.168 5.168 10 H 0.260 0.740 11 C -0.008 4.008 12 C -0.249 4.249 13 C 0.291 3.709 14 O -0.314 6.314 15 C -0.118 4.118 16 N -0.244 5.244 17 C -0.117 4.117 18 C 0.104 3.896 19 H 0.057 0.943 20 C -0.232 4.232 21 C -0.535 4.535 22 H 0.081 0.919 23 C -0.143 4.143 24 N -0.537 5.537 25 Si 0.725 3.275 26 H -0.204 1.204 27 H -0.215 1.215 28 H -0.202 1.202 29 C -0.083 4.083 30 C -0.004 4.004 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.119 0.881 34 H 0.159 0.841 35 H 0.148 0.852 36 H 0.208 0.792 37 H 0.114 0.886 38 H 0.073 0.927 39 H 0.091 0.909 40 H 0.076 0.924 41 H 0.030 0.970 42 H 0.025 0.975 43 H 0.107 0.893 44 H 0.050 0.950 45 H 0.070 0.930 46 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -5.425 -27.103 2.169 27.726 hybrid contribution 0.716 0.601 0.590 1.105 sum -4.709 -26.502 2.759 27.059 Atomic orbital electron populations 1.23270 0.76055 1.03599 1.02789 1.86521 1.23489 1.32802 1.84705 1.21094 0.89040 0.81397 0.72869 1.90883 1.66694 1.35911 1.45525 1.18798 0.88950 0.94433 1.13318 1.20722 0.92606 0.97874 0.96017 1.19713 0.94166 0.94404 1.07201 1.18519 0.83448 0.95274 1.02576 1.41436 1.06566 1.07242 1.61574 0.73950 1.22685 0.99688 0.82271 0.96128 1.20273 0.91550 0.95020 1.18066 1.20445 0.90934 0.86845 0.72680 1.90512 1.23345 1.82040 1.35522 1.22349 0.95448 0.92074 1.01932 1.62175 1.28335 0.99434 1.34504 1.22344 0.97294 1.02354 0.89731 1.19359 0.86777 0.89718 0.93777 0.94298 1.22422 1.02459 0.98503 0.99843 1.21097 0.93847 0.90507 1.48043 0.91855 1.24915 0.94847 0.99125 0.95459 1.69866 1.03359 1.30194 1.50270 0.86570 0.78674 0.83546 0.78682 1.20366 1.21478 1.20201 1.18772 0.92501 0.91630 1.05428 1.20859 0.92524 0.97401 0.89635 0.91794 0.91780 0.88060 0.84127 0.85207 0.79203 0.88600 0.92697 0.90929 0.92440 0.96958 0.97537 0.89280 0.94964 0.93047 0.83164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.56 101.05 1.07 1.34 16 2 O -0.36 -3.65 9.80 -40.62 -0.40 -4.05 16 3 C 0.51 6.59 7.89 34.53 0.27 6.86 16 4 O -0.50 -8.06 16.13 -19.26 -0.31 -8.37 16 5 C -0.15 -1.85 5.87 -104.97 -0.62 -2.47 16 6 C -0.05 -0.47 9.53 -39.55 -0.38 -0.85 16 7 C -0.13 -1.06 10.00 -39.82 -0.40 -1.46 16 8 C 0.11 1.05 7.24 -83.91 -0.61 0.45 16 9 N -0.57 -3.91 5.92 -10.26 -0.06 -3.97 16 10 H 0.42 1.23 8.96 -40.82 -0.37 0.86 16 11 C 0.13 1.09 11.31 -16.44 -0.19 0.90 16 12 C -0.24 -3.21 6.12 -104.86 -0.64 -3.85 16 13 C 0.41 7.01 6.64 -32.97 -0.22 6.79 16 14 O -0.44 -9.03 13.97 5.45 0.08 -8.95 16 15 C 0.01 0.20 4.17 -4.98 -0.02 0.18 16 16 N -0.52 -11.63 4.48 -237.73 -1.06 -12.70 16 17 C 0.03 0.67 8.53 60.07 0.51 1.18 16 18 C 0.21 5.25 2.34 -68.86 -0.16 5.09 16 19 H 0.04 1.05 8.03 -51.93 -0.42 0.63 16 20 C -0.17 -4.06 8.28 37.16 0.31 -3.75 16 21 C -0.50 -13.79 7.94 -34.44 -0.27 -14.07 16 22 H 0.06 1.80 6.75 -52.48 -0.35 1.44 16 23 C 0.06 1.59 5.30 -17.82 -0.09 1.49 16 24 N -0.90 -25.39 11.32 55.43 0.63 -24.77 16 25 Si 0.90 21.74 29.54 -169.99 -5.02 16.71 16 26 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 27 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 28 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 29 C -0.08 -1.05 6.23 -104.95 -0.65 -1.70 16 30 C 0.01 0.20 9.34 -38.95 -0.36 -0.16 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 33 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.14 0.94 7.58 -52.48 -0.40 0.54 16 35 H 0.13 0.60 8.06 -52.48 -0.42 0.18 16 36 H 0.19 1.04 7.91 -52.48 -0.42 0.62 16 37 H 0.10 1.52 8.00 -51.93 -0.42 1.11 16 38 H 0.06 0.87 6.94 -51.93 -0.36 0.51 16 39 H 0.07 1.67 6.53 -51.93 -0.34 1.33 16 40 H 0.06 1.20 5.82 -51.93 -0.30 0.89 16 41 H 0.01 0.25 6.28 -51.93 -0.33 -0.08 16 42 H 0.01 0.12 6.75 -51.93 -0.35 -0.23 16 43 H 0.09 2.32 6.07 -51.93 -0.32 2.00 16 44 H 0.03 0.75 6.39 -51.93 -0.33 0.41 16 45 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 46 H 0.15 2.48 6.97 -52.49 -0.37 2.12 16 LS Contribution 379.56 15.07 5.72 5.72 Total: -1.00 -35.58 379.56 -8.77 -44.35 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -5.88 Total: 0.07 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: -2.45 Total: -4.04 kcal Atomic # 7 Polarization: -40.94 SS G_CDS: -0.50 Total: -41.44 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: -0.63 Total: -21.37 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.58 -8.77 -44.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161544621.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.778 kcal (2) G-P(sol) polarization free energy of solvation -35.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds