Wall clock time and date at job start Wed Apr 1 2020 03:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47078 * 2 1 4 4 C 1.50700 * 109.47298 * 239.99660 * 2 1 3 5 5 H 1.08001 * 120.00025 * 245.43107 * 4 2 1 6 6 C 1.37875 * 119.99802 * 65.43206 * 4 2 1 7 7 N 1.31513 * 120.00226 * 8.88268 * 6 4 2 8 8 Si 1.86808 * 119.99627 * 188.88355 * 6 4 2 9 9 H 1.48499 * 109.47214 * 94.98801 * 8 6 4 10 10 H 1.48503 * 109.46714 * 214.98707 * 8 6 4 11 11 H 1.48504 * 109.47057 * 334.98503 * 8 6 4 12 12 N 1.46502 * 109.46790 * 119.99759 * 2 1 3 13 13 C 1.46490 * 120.00271 * 60.00146 * 12 2 1 14 14 C 1.34778 * 119.99665 * 240.00312 * 12 2 1 15 15 O 1.21559 * 120.00144 * 354.79107 * 14 12 2 16 16 C 1.47847 * 120.00038 * 175.07201 * 14 12 2 17 17 C 1.39582 * 120.14104 * 335.59677 * 16 14 12 18 18 C 1.37958 * 119.85187 * 179.78936 * 17 16 14 19 19 C 1.38357 * 120.14265 * 0.48986 * 18 17 16 20 20 C 1.50700 * 119.85266 * 179.71865 * 19 18 17 21 21 C 1.53002 * 109.47263 * 270.02261 * 20 19 18 22 22 H 1.09002 * 110.54158 * 303.60556 * 21 20 19 23 23 C 1.54230 * 110.60729 * 180.58874 * 21 20 19 24 24 C 1.51314 * 103.55556 * 241.48205 * 23 21 20 25 25 O 1.21219 * 125.39773 * 179.97438 * 24 23 21 26 26 N 1.33885 * 109.20466 * 0.02562 * 24 23 21 27 27 C 1.33870 * 114.47662 * 359.97438 * 26 24 23 28 28 O 1.21229 * 125.39563 * 179.97438 * 27 26 24 29 29 C 1.38361 * 120.29458 * 359.74116 * 19 18 17 30 30 C 1.37962 * 120.14551 * 0.02562 * 29 19 18 31 31 H 1.08999 * 109.47705 * 303.30257 * 1 2 3 32 32 H 1.09004 * 109.46904 * 63.30406 * 1 2 3 33 33 H 1.09002 * 109.47348 * 183.29533 * 1 2 3 34 34 H 0.97000 * 119.99772 * 179.97438 * 7 6 4 35 35 H 1.09000 * 109.47132 * 275.48142 * 13 12 2 36 36 H 1.09007 * 109.47217 * 35.47823 * 13 12 2 37 37 H 1.08996 * 109.47376 * 155.48033 * 13 12 2 38 38 H 1.08001 * 120.07020 * 0.02562 * 17 16 14 39 39 H 1.07998 * 119.92812 * 180.23057 * 18 17 16 40 40 H 1.08999 * 109.47102 * 30.02532 * 20 19 18 41 41 H 1.08997 * 109.47092 * 150.02171 * 20 19 18 42 42 H 1.08998 * 110.60544 * 359.97438 * 23 21 20 43 43 H 1.09001 * 110.60589 * 122.96453 * 23 21 20 44 44 H 0.97003 * 122.75838 * 180.02562 * 26 24 23 45 45 H 1.07999 * 119.92752 * 179.97438 * 29 19 18 46 46 H 1.07989 * 120.07092 * 179.97438 * 30 29 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.5790 -1.6369 -1.1337 6 6 1.7941 -0.1778 -2.4796 7 7 1.2859 1.0298 -2.5935 8 14 2.1933 -1.1715 -4.0103 9 1 0.9737 -1.8829 -4.4706 10 1 2.6688 -0.2600 -5.0819 11 1 3.2545 -2.1612 -3.6951 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0930 1.4281 14 6 2.7930 -0.0355 2.0834 15 8 3.1650 1.0971 1.8457 16 6 3.1958 -0.6967 3.3430 17 6 2.4219 -1.7321 3.8696 18 6 2.8056 -2.3478 5.0430 19 6 3.9492 -1.9342 5.7029 20 6 4.3588 -2.6072 6.9876 21 6 3.7189 -1.8790 8.1713 22 1 3.9898 -0.8233 8.1627 23 6 4.1333 -2.5384 9.5026 24 6 2.8199 -3.0056 10.0910 25 8 2.6903 -3.5838 11.1485 26 7 1.8236 -2.6802 9.2579 27 6 2.2149 -2.0434 8.1473 28 8 1.4806 -1.6598 7.2621 29 6 4.7181 -0.9052 5.1888 30 6 4.3482 -0.2843 4.0137 31 1 -0.3634 0.5642 0.8589 32 1 -0.3633 0.4617 -0.9182 33 1 -0.3634 -1.0260 0.0591 34 1 1.1186 1.4047 -3.4724 35 1 0.6899 -2.1464 1.9135 36 1 1.6248 -2.6202 0.4749 37 1 2.4150 -2.5561 2.0685 38 1 1.5268 -2.0531 3.3575 39 1 2.2098 -3.1516 5.4495 40 1 4.0258 -3.6450 6.9763 41 1 5.4439 -2.5749 7.0847 42 1 4.7950 -3.3854 9.3215 43 1 4.6104 -1.8106 10.1590 44 1 0.8946 -2.8881 9.4442 45 1 5.6094 -0.5869 5.7091 46 1 4.9490 0.5190 3.6138 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172772474.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:48 Heat of formation + Delta-G solvation = -59.091890 kcal Electronic energy + Delta-G solvation = -29617.834650 eV Core-core repulsion = 25473.329749 eV Total energy + Delta-G solvation = -4144.504902 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.29386 -40.00825 -39.07124 -38.09106 -36.36654 -35.39311 -34.61517 -32.96352 -31.44304 -30.91124 -29.39195 -27.68309 -26.40978 -25.39571 -25.15535 -22.84146 -22.52958 -22.24937 -21.07280 -20.53906 -18.85423 -18.32483 -17.25641 -16.84373 -16.59518 -16.29209 -16.09022 -15.46728 -15.44072 -14.96306 -14.67014 -14.55274 -14.44894 -14.16377 -14.04454 -13.87275 -13.56558 -13.33140 -12.83505 -12.62188 -12.52617 -12.46726 -12.13190 -11.82925 -11.77236 -11.65334 -11.25720 -11.02031 -10.98559 -10.94324 -10.74795 -10.72757 -10.52035 -10.41905 -10.27363 -10.16560 -9.22417 -8.99486 -8.75362 -8.56942 -8.39523 -7.58935 -6.07461 -4.12348 1.00982 1.09796 1.52766 2.26290 2.31441 3.27194 3.30977 3.34954 3.37430 3.55338 3.69729 3.80381 3.91088 4.12555 4.32283 4.41295 4.59752 4.65773 4.84298 4.97521 5.01013 5.05345 5.12124 5.20920 5.25427 5.38092 5.46456 5.51907 5.67441 5.77723 5.94454 5.96659 6.10678 6.15141 6.36130 6.40240 6.53602 6.57717 6.69563 6.77632 6.81999 6.99496 7.00973 7.36837 7.39898 7.56104 7.70297 7.94224 8.18157 8.52082 8.86166 9.05995 9.52508 11.00009 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.026520 B = 0.002169 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.571596 B =12908.413649 C =13129.597251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.255 3.745 3 H 0.071 0.929 4 C -0.528 4.528 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.895 3.105 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.585 5.585 13 C 0.070 3.930 14 C 0.542 3.458 15 O -0.547 6.547 16 C -0.114 4.114 17 C -0.102 4.102 18 C -0.097 4.097 19 C -0.086 4.086 20 C -0.062 4.062 21 C -0.121 4.121 22 H 0.129 0.871 23 C -0.156 4.156 24 C 0.530 3.470 25 O -0.488 6.488 26 N -0.684 5.684 27 C 0.523 3.477 28 O -0.454 6.454 29 C -0.123 4.123 30 C -0.069 4.069 31 H 0.016 0.984 32 H 0.077 0.923 33 H 0.032 0.968 34 H 0.263 0.737 35 H 0.048 0.952 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.146 0.854 39 H 0.117 0.883 40 H 0.079 0.921 41 H 0.095 0.905 42 H 0.124 0.876 43 H 0.124 0.876 44 H 0.415 0.585 45 H 0.124 0.876 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.591 -10.008 24.432 26.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.155 3.845 3 H 0.088 0.912 4 C -0.566 4.566 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.522 5.522 8 Si 0.723 3.277 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.315 5.315 13 C -0.073 4.073 14 C 0.329 3.671 15 O -0.426 6.426 16 C -0.117 4.117 17 C -0.120 4.120 18 C -0.116 4.116 19 C -0.087 4.087 20 C -0.099 4.099 21 C -0.143 4.143 22 H 0.147 0.853 23 C -0.195 4.195 24 C 0.318 3.682 25 O -0.360 6.360 26 N -0.350 5.350 27 C 0.310 3.690 28 O -0.322 6.322 29 C -0.141 4.141 30 C -0.088 4.088 31 H 0.035 0.965 32 H 0.096 0.904 33 H 0.051 0.949 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.096 0.904 37 H 0.088 0.912 38 H 0.163 0.837 39 H 0.135 0.865 40 H 0.097 0.903 41 H 0.113 0.887 42 H 0.142 0.858 43 H 0.142 0.858 44 H 0.254 0.746 45 H 0.142 0.858 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 5.402 -9.325 24.149 26.444 hybrid contribution -0.486 -0.651 -0.799 1.140 sum 4.916 -9.975 23.350 25.863 Atomic orbital electron populations 1.22020 0.98470 0.98920 1.00539 1.18982 0.90414 0.95119 0.79958 0.91159 1.21275 1.36401 1.08593 0.90349 0.92158 1.24907 0.95159 0.94650 0.98967 1.69974 1.44163 1.14039 1.24012 0.86529 0.78489 0.80002 0.82672 1.20615 1.21163 1.19899 1.48112 1.48575 1.11352 1.23430 1.22174 0.98730 0.83826 1.02570 1.18310 0.79389 0.86114 0.83253 1.90730 1.55413 1.18921 1.77566 1.20264 0.97072 0.97668 0.96738 1.22092 1.00133 0.94337 0.95443 1.20813 0.95746 1.00342 0.94651 1.19714 0.95953 0.97128 0.95858 1.20510 1.01384 0.98531 0.89525 1.22146 0.92088 1.04374 0.95653 0.85346 1.22619 0.96269 1.04065 0.96565 1.20807 0.87562 0.76754 0.83056 1.90826 1.86045 1.38328 1.20783 1.44847 1.12927 1.54892 1.22309 1.20803 0.91883 0.75940 0.80385 1.90905 1.60489 1.45271 1.35521 1.20867 1.00063 0.96663 0.96483 1.21208 0.95329 0.98282 0.93975 0.96496 0.90407 0.94915 0.92696 0.93377 0.90441 0.91202 0.83690 0.86499 0.90274 0.88679 0.85761 0.85834 0.74574 0.85798 0.85063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.36 9.12 37.16 0.34 -3.02 16 2 C 0.26 6.64 2.50 -69.08 -0.17 6.46 16 3 H 0.07 2.14 6.86 -51.93 -0.36 1.78 16 4 C -0.53 -14.41 8.06 -34.44 -0.28 -14.69 16 5 H 0.06 1.62 7.07 -52.49 -0.37 1.25 16 6 C 0.07 1.83 5.19 -17.82 -0.09 1.73 16 7 N -0.88 -25.54 12.13 55.43 0.67 -24.87 16 8 Si 0.90 21.12 29.55 -169.99 -5.02 16.10 16 9 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 12 N -0.58 -12.90 2.75 -176.38 -0.49 -13.38 16 13 C 0.07 1.21 7.66 59.84 0.46 1.67 16 14 C 0.54 11.96 7.50 -12.33 -0.09 11.87 16 15 O -0.55 -14.20 15.93 5.31 0.08 -14.12 16 16 C -0.11 -1.96 5.50 -104.97 -0.58 -2.53 16 17 C -0.10 -1.46 7.54 -39.18 -0.30 -1.75 16 18 C -0.10 -1.13 7.43 -39.64 -0.29 -1.42 16 19 C -0.09 -0.83 4.74 -104.53 -0.50 -1.32 16 20 C -0.06 -0.32 4.69 -27.88 -0.13 -0.45 16 21 C -0.12 -0.55 3.13 -90.82 -0.28 -0.83 16 22 H 0.13 0.50 8.14 -51.93 -0.42 0.08 16 23 C -0.16 -0.42 6.67 -26.94 -0.18 -0.60 16 24 C 0.53 3.20 8.55 -11.08 -0.09 3.10 16 25 O -0.49 -4.73 18.02 5.61 0.10 -4.63 16 26 N -0.68 -4.02 5.48 -11.39 -0.06 -4.08 16 27 C 0.52 3.88 7.67 -11.09 -0.09 3.79 16 28 O -0.45 -5.19 15.04 5.60 0.08 -5.11 16 29 C -0.12 -1.31 9.68 -39.64 -0.38 -1.70 16 30 C -0.07 -1.02 9.59 -39.19 -0.38 -1.40 16 31 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 2.01 6.81 -51.93 -0.35 1.66 16 33 H 0.03 0.70 7.56 -51.93 -0.39 0.31 16 34 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 35 H 0.05 0.73 7.13 -51.93 -0.37 0.36 16 36 H 0.08 1.39 6.86 -51.93 -0.36 1.03 16 37 H 0.07 1.03 5.11 -51.93 -0.27 0.77 16 38 H 0.15 2.00 4.40 -52.49 -0.23 1.77 16 39 H 0.12 1.18 7.67 -52.49 -0.40 0.78 16 40 H 0.08 0.35 8.08 -51.93 -0.42 -0.07 16 41 H 0.09 0.28 8.08 -51.93 -0.42 -0.14 16 42 H 0.12 0.13 7.74 -51.93 -0.40 -0.27 16 43 H 0.12 0.12 8.14 -51.93 -0.42 -0.30 16 44 H 0.41 2.08 8.96 -40.82 -0.37 1.71 16 45 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 46 H 0.13 1.99 7.83 -52.49 -0.41 1.58 16 LS Contribution 376.39 15.07 5.67 5.67 Total: -1.00 -36.37 376.39 -7.93 -44.30 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -5.94 Total: 1.20 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: -3.03 Total: -1.08 kcal Atomic # 7 Polarization: -42.46 SS G_CDS: 0.12 Total: -42.34 kcal Atomic # 8 Polarization: -24.12 SS G_CDS: 0.27 Total: -23.85 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -36.37 -7.93 -44.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172772474.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.793 kcal (2) G-P(sol) polarization free energy of solvation -36.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds