Wall clock time and date at job start Wed Apr 1 2020 03:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47078 * 2 1 4 4 C 1.50700 * 109.47298 * 239.99660 * 2 1 3 5 5 H 1.08001 * 120.00025 * 245.43107 * 4 2 1 6 6 C 1.37875 * 119.99802 * 65.43206 * 4 2 1 7 7 N 1.31513 * 120.00226 * 8.88268 * 6 4 2 8 8 Si 1.86808 * 119.99627 * 188.88355 * 6 4 2 9 9 H 1.48499 * 109.47214 * 94.98801 * 8 6 4 10 10 H 1.48503 * 109.46714 * 214.98707 * 8 6 4 11 11 H 1.48504 * 109.47057 * 334.98503 * 8 6 4 12 12 N 1.46502 * 109.46790 * 119.99759 * 2 1 3 13 13 C 1.46490 * 120.00271 * 60.00146 * 12 2 1 14 14 C 1.34778 * 119.99665 * 240.00312 * 12 2 1 15 15 O 1.21559 * 120.00144 * 354.79107 * 14 12 2 16 16 C 1.47847 * 120.00038 * 175.07201 * 14 12 2 17 17 C 1.39582 * 120.14104 * 335.59677 * 16 14 12 18 18 C 1.37958 * 119.85187 * 179.78936 * 17 16 14 19 19 C 1.38357 * 120.14265 * 0.48986 * 18 17 16 20 20 C 1.50700 * 119.85266 * 179.71865 * 19 18 17 21 21 C 1.53002 * 109.47263 * 270.02261 * 20 19 18 22 22 H 1.09002 * 110.54158 * 303.60556 * 21 20 19 23 23 C 1.54230 * 110.60729 * 180.58874 * 21 20 19 24 24 C 1.51314 * 103.55556 * 241.48205 * 23 21 20 25 25 O 1.21219 * 125.39773 * 179.97438 * 24 23 21 26 26 N 1.33885 * 109.20466 * 0.02562 * 24 23 21 27 27 C 1.33870 * 114.47662 * 359.97438 * 26 24 23 28 28 O 1.21229 * 125.39563 * 179.97438 * 27 26 24 29 29 C 1.38361 * 120.29458 * 359.74116 * 19 18 17 30 30 C 1.37962 * 120.14551 * 0.02562 * 29 19 18 31 31 H 1.08999 * 109.47705 * 303.30257 * 1 2 3 32 32 H 1.09004 * 109.46904 * 63.30406 * 1 2 3 33 33 H 1.09002 * 109.47348 * 183.29533 * 1 2 3 34 34 H 0.97000 * 119.99772 * 179.97438 * 7 6 4 35 35 H 1.09000 * 109.47132 * 275.48142 * 13 12 2 36 36 H 1.09007 * 109.47217 * 35.47823 * 13 12 2 37 37 H 1.08996 * 109.47376 * 155.48033 * 13 12 2 38 38 H 1.08001 * 120.07020 * 0.02562 * 17 16 14 39 39 H 1.07998 * 119.92812 * 180.23057 * 18 17 16 40 40 H 1.08999 * 109.47102 * 30.02532 * 20 19 18 41 41 H 1.08997 * 109.47092 * 150.02171 * 20 19 18 42 42 H 1.08998 * 110.60544 * 359.97438 * 23 21 20 43 43 H 1.09001 * 110.60589 * 122.96453 * 23 21 20 44 44 H 0.97003 * 122.75838 * 180.02562 * 26 24 23 45 45 H 1.07999 * 119.92752 * 179.97438 * 29 19 18 46 46 H 1.07989 * 120.07092 * 179.97438 * 30 29 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.5790 -1.6369 -1.1337 6 6 1.7941 -0.1778 -2.4796 7 7 1.2859 1.0298 -2.5935 8 14 2.1933 -1.1715 -4.0103 9 1 0.9737 -1.8829 -4.4706 10 1 2.6688 -0.2600 -5.0819 11 1 3.2545 -2.1612 -3.6951 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0930 1.4281 14 6 2.7930 -0.0355 2.0834 15 8 3.1650 1.0971 1.8457 16 6 3.1958 -0.6967 3.3430 17 6 2.4219 -1.7321 3.8696 18 6 2.8056 -2.3478 5.0430 19 6 3.9492 -1.9342 5.7029 20 6 4.3588 -2.6072 6.9876 21 6 3.7189 -1.8790 8.1713 22 1 3.9898 -0.8233 8.1627 23 6 4.1333 -2.5384 9.5026 24 6 2.8199 -3.0056 10.0910 25 8 2.6903 -3.5838 11.1485 26 7 1.8236 -2.6802 9.2579 27 6 2.2149 -2.0434 8.1473 28 8 1.4806 -1.6598 7.2621 29 6 4.7181 -0.9052 5.1888 30 6 4.3482 -0.2843 4.0137 31 1 -0.3634 0.5642 0.8589 32 1 -0.3633 0.4617 -0.9182 33 1 -0.3634 -1.0260 0.0591 34 1 1.1186 1.4047 -3.4724 35 1 0.6899 -2.1464 1.9135 36 1 1.6248 -2.6202 0.4749 37 1 2.4150 -2.5561 2.0685 38 1 1.5268 -2.0531 3.3575 39 1 2.2098 -3.1516 5.4495 40 1 4.0258 -3.6450 6.9763 41 1 5.4439 -2.5749 7.0847 42 1 4.7950 -3.3854 9.3215 43 1 4.6104 -1.8106 10.1590 44 1 0.8946 -2.8881 9.4442 45 1 5.6094 -0.5869 5.7091 46 1 4.9490 0.5190 3.6138 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172772474.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:47 Heat of formation + Delta-G solvation = -85.373388 kcal Electronic energy + Delta-G solvation = -29618.974301 eV Core-core repulsion = 25473.329749 eV Total energy + Delta-G solvation = -4145.644553 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.77634 -41.34631 -39.82243 -39.23891 -37.23817 -36.96134 -35.41069 -34.70315 -32.56345 -31.90940 -30.97509 -28.44128 -27.87958 -27.30130 -26.02330 -24.07768 -23.51450 -22.68536 -22.31631 -21.21506 -20.46850 -18.85231 -18.59908 -18.04249 -17.71252 -17.56616 -17.09487 -16.74322 -16.30091 -16.21227 -15.97352 -15.43787 -15.40137 -15.21390 -15.01364 -14.68506 -14.50269 -14.36222 -14.21400 -13.94989 -13.85273 -13.67182 -13.29849 -13.04307 -12.93008 -12.84680 -12.78155 -12.64969 -12.31587 -12.17920 -12.11448 -12.09228 -11.71165 -11.47749 -11.33191 -11.26721 -10.98407 -10.69975 -10.52608 -9.75885 -9.63849 -9.34226 -8.18796 -6.32821 -0.01209 0.49990 0.58693 1.40217 1.41111 1.52107 1.79656 1.88135 1.94206 2.28659 2.46669 2.90893 3.10143 3.20655 3.31609 3.45317 3.69006 3.93030 4.00378 4.08492 4.09389 4.34985 4.38304 4.53612 4.56776 4.60312 4.68499 4.75922 4.80206 4.84331 4.91187 4.93013 4.95715 4.98933 5.08140 5.16738 5.17389 5.38733 5.42621 5.46939 5.60031 5.63628 5.65121 5.70512 5.95554 6.07064 6.10028 6.35564 6.74569 6.76000 6.90976 7.27058 7.42663 8.88538 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.026520 B = 0.002169 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.571596 B =12908.413649 C =13129.597251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.258 3.742 3 H 0.012 0.988 4 C -0.540 4.540 5 H 0.062 0.938 6 C 0.013 3.987 7 N -0.920 5.920 8 Si 0.968 3.032 9 H -0.267 1.267 10 H -0.286 1.286 11 H -0.267 1.267 12 N -0.593 5.593 13 C 0.070 3.930 14 C 0.531 3.469 15 O -0.606 6.606 16 C -0.148 4.148 17 C -0.108 4.108 18 C -0.097 4.097 19 C -0.066 4.066 20 C -0.061 4.061 21 C -0.113 4.113 22 H 0.142 0.858 23 C -0.138 4.138 24 C 0.530 3.470 25 O -0.529 6.529 26 N -0.683 5.683 27 C 0.521 3.479 28 O -0.502 6.502 29 C -0.110 4.110 30 C -0.087 4.087 31 H 0.022 0.978 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.265 0.735 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.096 0.904 38 H 0.145 0.855 39 H 0.135 0.865 40 H 0.094 0.906 41 H 0.134 0.866 42 H 0.153 0.847 43 H 0.150 0.850 44 H 0.414 0.586 45 H 0.166 0.834 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.488 -13.103 27.059 30.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.156 3.844 3 H 0.030 0.970 4 C -0.578 4.578 5 H 0.080 0.920 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.792 3.208 9 H -0.192 1.192 10 H -0.212 1.212 11 H -0.191 1.191 12 N -0.322 5.322 13 C -0.072 4.072 14 C 0.321 3.679 15 O -0.490 6.490 16 C -0.151 4.151 17 C -0.126 4.126 18 C -0.115 4.115 19 C -0.066 4.066 20 C -0.098 4.098 21 C -0.134 4.134 22 H 0.160 0.840 23 C -0.176 4.176 24 C 0.321 3.679 25 O -0.403 6.403 26 N -0.347 5.347 27 C 0.310 3.690 28 O -0.373 6.373 29 C -0.127 4.127 30 C -0.106 4.106 31 H 0.041 0.959 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.114 0.886 38 H 0.162 0.838 39 H 0.153 0.847 40 H 0.112 0.888 41 H 0.152 0.848 42 H 0.170 0.830 43 H 0.168 0.832 44 H 0.253 0.747 45 H 0.184 0.816 46 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 7.295 -12.472 26.807 30.453 hybrid contribution -1.073 0.304 -1.437 1.819 sum 6.222 -12.167 25.370 28.816 Atomic orbital electron populations 1.21807 0.96972 1.00146 0.99517 1.18606 0.91522 0.92600 0.81694 0.97040 1.21533 1.36523 1.08617 0.91148 0.91960 1.25815 0.94971 0.95549 1.02289 1.70123 1.45233 1.15687 1.24792 0.85408 0.78772 0.78372 0.78250 1.19162 1.21234 1.19149 1.48119 1.48603 1.13151 1.22316 1.22427 1.00872 0.80942 1.02937 1.19229 0.78298 0.85647 0.84710 1.90669 1.57623 1.21531 1.79192 1.19917 0.99621 1.00057 0.95484 1.22071 0.99860 0.93924 0.96726 1.21091 0.96567 1.00344 0.93523 1.20251 0.93998 0.95530 0.96812 1.20703 1.03832 0.98682 0.86606 1.22182 0.89350 1.05436 0.96450 0.83998 1.22700 0.94419 1.05379 0.95149 1.21426 0.88691 0.75552 0.82228 1.90820 1.86689 1.40282 1.22551 1.44942 1.13358 1.54270 1.22120 1.21387 0.93195 0.74757 0.79666 1.90897 1.61937 1.47268 1.37238 1.21253 1.01160 0.95782 0.94553 1.21285 0.94848 0.98716 0.95761 0.95909 0.92773 0.92534 0.92605 0.90979 0.91204 0.88588 0.83754 0.84700 0.88759 0.84770 0.82961 0.83217 0.74680 0.81613 0.86904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.25 9.12 71.98 0.66 -5.59 16 2 C 0.26 14.19 2.50 44.25 0.11 14.30 16 3 H 0.01 0.77 6.86 -2.39 -0.02 0.75 16 4 C -0.54 -30.52 8.06 25.60 0.21 -30.31 16 5 H 0.06 3.41 7.07 -2.91 -0.02 3.39 16 6 C 0.01 0.76 5.19 84.65 0.44 1.20 16 7 N -0.92 -55.39 12.13 21.45 0.26 -55.13 16 8 Si 0.97 43.99 29.55 68.60 2.03 46.02 16 9 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 10 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 11 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 12 N -0.59 -27.44 2.75 -830.22 -2.29 -29.72 16 13 C 0.07 2.39 7.66 127.77 0.98 3.37 16 14 C 0.53 25.02 7.50 86.79 0.65 25.68 16 15 O -0.61 -34.43 15.93 -3.90 -0.06 -34.49 16 16 C -0.15 -5.19 5.50 -20.09 -0.11 -5.31 16 17 C -0.11 -2.99 7.54 22.53 0.17 -2.82 16 18 C -0.10 -1.98 7.43 22.23 0.17 -1.81 16 19 C -0.07 -0.98 4.74 -19.81 -0.09 -1.07 16 20 C -0.06 -0.25 4.69 29.85 0.14 -0.11 16 21 C -0.11 -0.43 3.13 -10.93 -0.03 -0.46 16 22 H 0.14 0.30 8.14 -2.39 -0.02 0.28 16 23 C -0.14 0.04 6.67 30.46 0.20 0.25 16 24 C 0.53 4.71 8.55 87.99 0.75 5.46 16 25 O -0.53 -9.16 18.02 -2.84 -0.05 -9.21 16 26 N -0.68 -6.45 5.48 -427.80 -2.34 -8.80 16 27 C 0.52 6.19 7.67 87.99 0.68 6.86 16 28 O -0.50 -10.64 15.04 -2.87 -0.04 -10.68 16 29 C -0.11 -1.98 9.68 22.23 0.22 -1.76 16 30 C -0.09 -2.57 9.59 22.53 0.22 -2.35 16 31 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.05 2.92 6.81 -2.39 -0.02 2.91 16 33 H 0.06 2.47 7.56 -2.39 -0.02 2.45 16 34 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 35 H 0.07 2.11 7.13 -2.39 -0.02 2.10 16 36 H 0.07 2.48 6.86 -2.38 -0.02 2.47 16 37 H 0.10 2.78 5.11 -2.39 -0.01 2.77 16 38 H 0.15 3.87 4.40 -2.91 -0.01 3.86 16 39 H 0.14 2.28 7.67 -2.91 -0.02 2.25 16 40 H 0.09 0.23 8.08 -2.39 -0.02 0.21 16 41 H 0.13 -0.31 8.08 -2.39 -0.02 -0.33 16 42 H 0.15 -0.75 7.74 -2.39 -0.02 -0.77 16 43 H 0.15 -0.66 8.14 -2.39 -0.02 -0.68 16 44 H 0.41 3.70 8.96 -92.71 -0.83 2.87 16 45 H 0.17 1.58 8.06 -2.91 -0.02 1.56 16 46 H 0.11 3.64 7.83 -2.92 -0.02 3.62 16 Total: -1.00 -88.63 376.39 3.05 -85.59 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: 0.21 Total: 10.90 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: 5.34 Total: 5.52 kcal Atomic # 7 Polarization: -89.28 SS G_CDS: -4.37 Total: -93.65 kcal Atomic # 8 Polarization: -54.22 SS G_CDS: -0.16 Total: -54.38 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -88.63 3.05 -85.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172772474.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.213 kcal (2) G-P(sol) polarization free energy of solvation -88.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds