Wall clock time and date at job start Wed Apr 1 2020 02:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08997 * 109.59660 * 2 1 4 4 C 1.51332 * 109.59968 * 120.47724 * 2 1 3 5 5 O 1.21285 * 120.35326 * 231.51147 * 4 2 1 6 6 N 1.34254 * 119.30222 * 51.49254 * 4 2 1 7 7 C 1.46707 * 120.36966 * 2.83766 * 6 4 2 8 8 C 1.53031 * 109.07002 * 71.31261 * 7 6 4 9 9 C 1.52938 * 110.12422 * 271.23611 * 8 7 6 10 10 N 1.46067 * 111.26346 * 62.80829 * 9 8 7 11 11 C 1.34773 * 119.81123 * 117.08438 * 10 9 8 12 12 O 1.21725 * 119.99878 * 4.95965 * 11 10 9 13 13 C 1.46250 * 120.00050 * 184.68972 * 11 10 9 14 14 C 1.35029 * 120.00016 * 175.39051 * 13 11 10 15 15 C 1.46958 * 119.99940 * 179.97438 * 14 13 11 16 16 C 1.40027 * 120.10149 * 359.72515 * 15 14 13 17 17 C 1.37599 * 119.89637 * 179.71542 * 16 15 14 18 18 C 1.39176 * 120.10072 * 0.56105 * 17 16 15 19 19 O 1.35574 * 119.90124 * 179.69830 * 18 17 16 20 20 C 1.34783 * 117.00082 * 185.59058 * 19 18 17 21 21 H 1.08001 * 119.99868 * 354.93825 * 20 19 18 22 22 C 1.38722 * 119.99902 * 174.94686 * 20 19 18 23 23 N 1.31506 * 119.99906 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00100 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47037 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.47071 * 119.99713 * 24 22 20 27 27 H 1.48495 * 109.47360 * 240.00166 * 24 22 20 28 28 C 1.39182 * 120.20389 * 359.71560 * 18 17 16 29 29 C 1.37594 * 120.09950 * 359.97438 * 28 18 17 30 30 H 1.08999 * 109.46944 * 144.58161 * 1 2 3 31 31 H 1.09002 * 109.46582 * 264.58082 * 1 2 3 32 32 H 1.08998 * 109.46902 * 24.58230 * 1 2 3 33 33 H 0.96999 * 119.81907 * 182.86577 * 6 4 2 34 34 H 1.09000 * 109.53135 * 191.18936 * 7 6 4 35 35 H 1.08999 * 109.53675 * 311.35359 * 7 6 4 36 36 H 1.09004 * 109.35613 * 31.53795 * 8 7 6 37 37 H 1.09001 * 109.35329 * 151.25303 * 8 7 6 38 38 H 1.09003 * 109.18883 * 302.36472 * 9 8 7 39 39 H 1.09000 * 109.20978 * 183.26050 * 9 8 7 40 40 H 1.07996 * 120.00352 * 355.38316 * 13 11 10 41 41 H 1.07996 * 119.99632 * 359.97438 * 14 13 11 42 42 H 1.07996 * 120.05303 * 359.97438 * 16 15 14 43 43 H 1.07992 * 119.94922 * 180.29618 * 17 16 15 44 44 H 0.97001 * 120.00221 * 180.02562 * 23 22 20 45 45 H 1.07996 * 119.94988 * 180.02562 * 28 18 17 46 46 H 1.08002 * 120.04982 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8957 1.0268 0.0000 4 6 2.0377 -0.7231 1.2287 5 8 2.8569 -0.1991 1.9535 6 7 1.5714 -1.9506 1.5082 7 6 0.6273 -2.6101 0.5994 8 6 1.3654 -3.0203 -0.6769 9 6 1.3282 -1.8803 -1.6957 10 7 2.0221 -0.6975 -1.1928 11 6 3.1175 -0.2411 -1.8316 12 8 3.4736 -0.7583 -2.8744 13 6 3.8748 0.8795 -1.2752 14 6 5.0233 1.2768 -1.8638 15 6 5.7840 2.4031 -1.3049 16 6 5.3168 3.0695 -0.1654 17 6 6.0355 4.1198 0.3577 18 6 7.2190 4.5276 -0.2507 19 8 7.9207 5.5668 0.2646 20 6 8.9937 5.9871 -0.4343 21 1 9.3082 5.4491 -1.3163 22 6 9.6943 7.1107 -0.0205 23 7 9.3112 7.7660 1.0533 24 14 11.1820 7.6928 -0.9887 25 1 11.4031 6.7899 -2.1467 26 1 10.9446 9.0748 -1.4775 27 1 12.3804 7.6767 -0.1120 28 6 7.6842 3.8719 -1.3868 29 6 6.9755 2.8165 -1.9133 30 1 -0.3633 -0.8375 -0.5956 31 1 -0.3632 -0.0971 1.0231 32 1 -0.3633 0.9345 -0.4275 33 1 1.8600 -2.4039 2.3157 34 1 0.2146 -3.4958 1.0825 35 1 -0.1799 -1.9215 0.3498 36 1 2.4015 -3.2570 -0.4348 37 1 0.8846 -3.8997 -1.1054 38 1 0.2904 -1.6218 -1.9064 39 1 1.8066 -2.2083 -2.6186 40 1 3.5155 1.3893 -0.3935 41 1 5.3827 0.7668 -2.7453 42 1 4.3961 2.7570 0.3045 43 1 5.6785 4.6313 1.2393 44 1 9.8008 8.5518 1.3425 45 1 8.6032 4.1914 -1.8554 46 1 7.3370 2.3086 -2.7952 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188089174.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:41:21 Heat of formation + Delta-G solvation = -30.434379 kcal Electronic energy + Delta-G solvation = -29355.409092 eV Core-core repulsion = 25212.146873 eV Total energy + Delta-G solvation = -4143.262219 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.26997 -39.27961 -39.00919 -37.22245 -36.76119 -35.06267 -33.31663 -32.54242 -32.15200 -30.73049 -30.36936 -28.36646 -26.42185 -25.55945 -25.24041 -23.41037 -22.18951 -21.53465 -20.93607 -20.07233 -18.93025 -18.25279 -17.65568 -17.37605 -17.12427 -16.63532 -15.91097 -15.37461 -15.17328 -14.76428 -14.60896 -14.42765 -14.35426 -14.11273 -13.81577 -13.77659 -13.51048 -13.42966 -13.15338 -13.03125 -12.69472 -12.51517 -12.42946 -12.32297 -11.85593 -11.72842 -11.64393 -11.47528 -11.12331 -11.04947 -11.01394 -10.60941 -10.49815 -10.35007 -9.80903 -9.57120 -9.45038 -9.41339 -8.93027 -8.79447 -8.32065 -7.06864 -6.61639 -4.16255 1.07116 2.10208 2.19922 2.53662 2.90458 3.00566 3.05830 3.06969 3.12808 3.50288 3.85175 4.04902 4.29576 4.34689 4.38073 4.56245 4.58422 4.70182 4.83831 4.96677 4.98151 5.05971 5.10152 5.13682 5.21638 5.27312 5.35143 5.47968 5.54593 5.60201 5.68565 5.73737 5.79209 6.06561 6.17292 6.20139 6.44594 6.51893 6.53652 6.67352 6.84534 6.87313 6.95587 7.14733 7.20535 7.29050 7.34817 7.69415 7.84074 7.91620 8.16851 8.83233 9.51072 10.55170 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.023845 B = 0.002057 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.972204 B =13610.797694 C =14339.105068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.122 3.878 3 H 0.128 0.872 4 C 0.508 3.492 5 O -0.527 6.527 6 N -0.725 5.725 7 C 0.082 3.918 8 C -0.160 4.160 9 C 0.102 3.898 10 N -0.606 5.606 11 C 0.563 3.437 12 O -0.550 6.550 13 C -0.290 4.290 14 C 0.045 3.955 15 C -0.200 4.200 16 C -0.039 4.039 17 C -0.199 4.199 18 C 0.168 3.832 19 O -0.163 6.163 20 C -0.392 4.392 21 H 0.098 0.902 22 C 0.041 3.959 23 N -0.852 5.852 24 Si 0.945 3.055 25 H -0.265 1.265 26 H -0.274 1.274 27 H -0.274 1.274 28 C -0.243 4.243 29 C -0.034 4.034 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.400 0.600 34 H 0.086 0.914 35 H 0.098 0.902 36 H 0.075 0.925 37 H 0.088 0.912 38 H 0.073 0.927 39 H 0.100 0.900 40 H 0.129 0.871 41 H 0.122 0.878 42 H 0.119 0.881 43 H 0.121 0.879 44 H 0.273 0.727 45 H 0.131 0.869 46 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.698 -18.986 -2.719 27.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.014 3.986 3 H 0.145 0.855 4 C 0.292 3.708 5 O -0.400 6.400 6 N -0.379 5.379 7 C -0.042 4.042 8 C -0.199 4.199 9 C -0.021 4.021 10 N -0.342 5.342 11 C 0.358 3.642 12 O -0.430 6.430 13 C -0.311 4.311 14 C 0.025 3.975 15 C -0.201 4.201 16 C -0.057 4.057 17 C -0.218 4.218 18 C 0.112 3.888 19 O -0.064 6.064 20 C -0.468 4.468 21 H 0.115 0.885 22 C -0.165 4.165 23 N -0.485 5.485 24 Si 0.769 3.231 25 H -0.189 1.189 26 H -0.199 1.199 27 H -0.199 1.199 28 C -0.262 4.262 29 C -0.053 4.053 30 H 0.105 0.895 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.236 0.764 34 H 0.104 0.896 35 H 0.116 0.884 36 H 0.094 0.906 37 H 0.107 0.893 38 H 0.091 0.909 39 H 0.118 0.882 40 H 0.146 0.854 41 H 0.140 0.860 42 H 0.137 0.863 43 H 0.139 0.861 44 H 0.083 0.917 45 H 0.149 0.851 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -19.068 -18.487 -2.705 26.696 hybrid contribution 0.816 -0.055 0.003 0.817 sum -18.252 -18.542 -2.702 26.158 Atomic orbital electron populations 1.22509 0.92875 1.04315 1.03557 1.21648 0.96056 0.98066 0.82803 0.85451 1.21195 0.80933 0.81790 0.86860 1.90822 1.31676 1.66578 1.50971 1.45976 1.47675 1.17732 1.26470 1.22270 0.92558 0.98747 0.90599 1.22453 1.02567 0.98779 0.96102 1.21403 0.97705 0.84658 0.98289 1.47644 1.29380 1.29136 1.27998 1.18491 0.79172 0.83316 0.83260 1.90764 1.68551 1.60511 1.23171 1.22545 1.00423 1.02428 1.05686 1.22294 0.90724 0.90196 0.94306 1.18451 0.99127 1.01456 1.01039 1.20912 0.97769 0.93209 0.93790 1.20156 0.95810 1.01933 1.03881 1.19621 0.90335 0.87914 0.90931 1.83908 1.37075 1.40276 1.45109 1.21524 1.03874 1.11277 1.10094 0.88503 1.25397 0.99293 0.95129 0.96715 1.70025 1.38984 1.17596 1.21888 0.85582 0.79436 0.79017 0.79064 1.18877 1.19933 1.19943 1.21090 1.03731 1.00837 1.00563 1.20975 0.92764 0.94412 0.97111 0.89528 0.90664 0.90470 0.76425 0.89561 0.88409 0.90648 0.89345 0.90916 0.88196 0.85380 0.85988 0.86335 0.86076 0.91679 0.85120 0.86842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.95 7.92 37.16 0.29 -0.66 16 2 C 0.12 1.14 2.68 -68.67 -0.18 0.95 16 3 H 0.13 1.30 5.80 -51.93 -0.30 1.00 16 4 C 0.51 5.65 6.83 -10.91 -0.07 5.58 16 5 O -0.53 -8.32 17.95 5.55 0.10 -8.22 16 6 N -0.72 -5.44 5.29 -60.03 -0.32 -5.76 16 7 C 0.08 0.35 6.32 -3.91 -0.02 0.33 16 8 C -0.16 -0.90 5.94 -26.75 -0.16 -1.05 16 9 C 0.10 0.78 5.61 -4.31 -0.02 0.76 16 10 N -0.61 -6.44 2.58 -169.01 -0.44 -6.88 16 11 C 0.56 8.18 7.58 -13.04 -0.10 8.08 16 12 O -0.55 -9.44 15.54 5.17 0.08 -9.36 16 13 C -0.29 -4.38 8.62 -37.51 -0.32 -4.70 16 14 C 0.04 0.72 9.45 -37.19 -0.35 0.37 16 15 C -0.20 -3.62 5.87 -105.03 -0.62 -4.24 16 16 C -0.04 -0.71 9.40 -39.14 -0.37 -1.08 16 17 C -0.20 -4.20 9.97 -39.47 -0.39 -4.59 16 18 C 0.17 4.01 6.66 -38.88 -0.26 3.75 16 19 O -0.16 -4.52 9.74 0.73 0.01 -4.52 16 20 C -0.39 -10.62 9.48 30.91 0.29 -10.33 16 21 H 0.10 2.42 5.18 -52.49 -0.27 2.15 16 22 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 23 N -0.85 -24.25 13.67 55.48 0.76 -23.49 16 24 Si 0.94 19.88 29.55 -169.99 -5.02 14.85 16 25 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 26 H -0.27 -5.65 7.11 56.52 0.40 -5.24 16 27 H -0.27 -5.66 7.11 56.52 0.40 -5.25 16 28 C -0.24 -5.19 9.14 -39.47 -0.36 -5.56 16 29 C -0.03 -0.64 9.78 -39.15 -0.38 -1.02 16 30 H 0.09 0.34 3.56 -51.93 -0.19 0.15 16 31 H 0.07 0.35 7.51 -51.93 -0.39 -0.04 16 32 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.40 2.71 8.93 -40.82 -0.36 2.34 16 34 H 0.09 0.18 8.14 -51.93 -0.42 -0.25 16 35 H 0.10 0.32 3.65 -51.93 -0.19 0.13 16 36 H 0.07 0.62 8.04 -51.93 -0.42 0.20 16 37 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.07 0.38 6.26 -51.93 -0.33 0.05 16 39 H 0.10 0.96 6.84 -51.93 -0.36 0.60 16 40 H 0.13 1.85 4.10 -52.49 -0.22 1.63 16 41 H 0.12 1.92 7.53 -52.49 -0.40 1.52 16 42 H 0.12 1.92 6.16 -52.49 -0.32 1.59 16 43 H 0.12 2.46 8.06 -52.49 -0.42 2.03 16 44 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 45 H 0.13 2.75 5.62 -52.49 -0.29 2.46 16 46 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 LS Contribution 370.43 15.07 5.58 5.58 Total: -1.00 -34.50 370.43 -7.66 -42.16 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -5.28 Total: 8.06 kcal Atomic # 6 Polarization: -9.30 SS G_CDS: -3.13 Total: -12.43 kcal Atomic # 7 Polarization: -36.13 SS G_CDS: 0.00 Total: -36.13 kcal Atomic # 8 Polarization: -22.28 SS G_CDS: 0.19 Total: -22.09 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.85 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.50 -7.66 -42.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188089174.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.724 kcal (2) G-P(sol) polarization free energy of solvation -34.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds