Wall clock time and date at job start Wed Apr 1 2020 02:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08997 * 109.59660 * 2 1 4 4 C 1.51332 * 109.59968 * 120.47724 * 2 1 3 5 5 O 1.21285 * 120.35326 * 231.51147 * 4 2 1 6 6 N 1.34254 * 119.30222 * 51.49254 * 4 2 1 7 7 C 1.46707 * 120.36966 * 2.83766 * 6 4 2 8 8 C 1.53031 * 109.07002 * 71.31261 * 7 6 4 9 9 C 1.52938 * 110.12422 * 271.23611 * 8 7 6 10 10 N 1.46067 * 111.26346 * 62.80829 * 9 8 7 11 11 C 1.34773 * 119.81123 * 117.08438 * 10 9 8 12 12 O 1.21725 * 119.99878 * 4.95965 * 11 10 9 13 13 C 1.46250 * 120.00050 * 184.68972 * 11 10 9 14 14 C 1.35029 * 120.00016 * 175.39051 * 13 11 10 15 15 C 1.46958 * 119.99940 * 179.97438 * 14 13 11 16 16 C 1.40027 * 120.10149 * 359.72515 * 15 14 13 17 17 C 1.37599 * 119.89637 * 179.71542 * 16 15 14 18 18 C 1.39176 * 120.10072 * 0.56105 * 17 16 15 19 19 O 1.35574 * 119.90124 * 179.69830 * 18 17 16 20 20 C 1.34783 * 117.00082 * 185.59058 * 19 18 17 21 21 H 1.08001 * 119.99868 * 354.93825 * 20 19 18 22 22 C 1.38722 * 119.99902 * 174.94686 * 20 19 18 23 23 N 1.31506 * 119.99906 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00100 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47037 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.47071 * 119.99713 * 24 22 20 27 27 H 1.48495 * 109.47360 * 240.00166 * 24 22 20 28 28 C 1.39182 * 120.20389 * 359.71560 * 18 17 16 29 29 C 1.37594 * 120.09950 * 359.97438 * 28 18 17 30 30 H 1.08999 * 109.46944 * 144.58161 * 1 2 3 31 31 H 1.09002 * 109.46582 * 264.58082 * 1 2 3 32 32 H 1.08998 * 109.46902 * 24.58230 * 1 2 3 33 33 H 0.96999 * 119.81907 * 182.86577 * 6 4 2 34 34 H 1.09000 * 109.53135 * 191.18936 * 7 6 4 35 35 H 1.08999 * 109.53675 * 311.35359 * 7 6 4 36 36 H 1.09004 * 109.35613 * 31.53795 * 8 7 6 37 37 H 1.09001 * 109.35329 * 151.25303 * 8 7 6 38 38 H 1.09003 * 109.18883 * 302.36472 * 9 8 7 39 39 H 1.09000 * 109.20978 * 183.26050 * 9 8 7 40 40 H 1.07996 * 120.00352 * 355.38316 * 13 11 10 41 41 H 1.07996 * 119.99632 * 359.97438 * 14 13 11 42 42 H 1.07996 * 120.05303 * 359.97438 * 16 15 14 43 43 H 1.07992 * 119.94922 * 180.29618 * 17 16 15 44 44 H 0.97001 * 120.00221 * 180.02562 * 23 22 20 45 45 H 1.07996 * 119.94988 * 180.02562 * 28 18 17 46 46 H 1.08002 * 120.04982 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8957 1.0268 0.0000 4 6 2.0377 -0.7231 1.2287 5 8 2.8569 -0.1991 1.9535 6 7 1.5714 -1.9506 1.5082 7 6 0.6273 -2.6101 0.5994 8 6 1.3654 -3.0203 -0.6769 9 6 1.3282 -1.8803 -1.6957 10 7 2.0221 -0.6975 -1.1928 11 6 3.1175 -0.2411 -1.8316 12 8 3.4736 -0.7583 -2.8744 13 6 3.8748 0.8795 -1.2752 14 6 5.0233 1.2768 -1.8638 15 6 5.7840 2.4031 -1.3049 16 6 5.3168 3.0695 -0.1654 17 6 6.0355 4.1198 0.3577 18 6 7.2190 4.5276 -0.2507 19 8 7.9207 5.5668 0.2646 20 6 8.9937 5.9871 -0.4343 21 1 9.3082 5.4491 -1.3163 22 6 9.6943 7.1107 -0.0205 23 7 9.3112 7.7660 1.0533 24 14 11.1820 7.6928 -0.9887 25 1 11.4031 6.7899 -2.1467 26 1 10.9446 9.0748 -1.4775 27 1 12.3804 7.6767 -0.1120 28 6 7.6842 3.8719 -1.3868 29 6 6.9755 2.8165 -1.9133 30 1 -0.3633 -0.8375 -0.5956 31 1 -0.3632 -0.0971 1.0231 32 1 -0.3633 0.9345 -0.4275 33 1 1.8600 -2.4039 2.3157 34 1 0.2146 -3.4958 1.0825 35 1 -0.1799 -1.9215 0.3498 36 1 2.4015 -3.2570 -0.4348 37 1 0.8846 -3.8997 -1.1054 38 1 0.2904 -1.6218 -1.9064 39 1 1.8066 -2.2083 -2.6186 40 1 3.5155 1.3893 -0.3935 41 1 5.3827 0.7668 -2.7453 42 1 4.3961 2.7570 0.3045 43 1 5.6785 4.6313 1.2393 44 1 9.8008 8.5518 1.3425 45 1 8.6032 4.1914 -1.8554 46 1 7.3370 2.3086 -2.7952 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188089174.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:41:20 Heat of formation + Delta-G solvation = -54.759998 kcal Electronic energy + Delta-G solvation = -29356.463930 eV Core-core repulsion = 25212.146873 eV Total energy + Delta-G solvation = -4144.317057 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.10510 -40.88308 -40.19629 -38.59095 -37.96671 -35.85251 -34.81613 -34.09162 -33.11826 -32.01224 -31.46315 -29.79960 -27.65632 -26.99011 -25.90366 -24.64983 -23.76211 -22.68576 -21.65788 -21.27857 -20.12079 -19.70303 -18.86811 -18.76270 -18.21044 -17.60891 -16.88463 -16.51548 -16.44351 -16.11763 -15.97887 -15.67994 -15.64616 -15.43843 -15.08824 -14.74648 -14.69593 -14.47881 -14.23010 -14.12750 -13.79756 -13.64434 -13.39790 -13.35755 -13.09508 -12.99371 -12.82683 -12.74143 -12.61262 -12.22827 -12.10614 -12.05548 -11.67825 -11.23899 -11.16909 -11.12045 -10.94799 -10.61444 -10.07528 -9.93412 -9.77995 -8.72804 -8.53515 -6.19829 -0.33103 0.54717 1.04839 1.25123 1.35217 1.44291 1.53713 2.09751 2.14028 2.16048 2.37566 2.83522 3.14368 3.35804 3.38810 3.46417 3.73104 3.84808 3.90413 3.94435 4.01759 4.06824 4.18862 4.26712 4.40634 4.42803 4.49435 4.59315 4.62296 4.70478 4.74247 4.86534 4.90055 4.95701 4.99432 5.11164 5.16067 5.16945 5.29412 5.35208 5.47388 5.55297 5.59613 5.76137 5.85393 5.95598 6.05906 6.13852 6.19028 6.90467 7.04185 7.14560 7.67145 8.68915 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.023845 B = 0.002057 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.972204 B =13610.797694 C =14339.105068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.117 3.883 3 H 0.116 0.884 4 C 0.502 3.498 5 O -0.586 6.586 6 N -0.714 5.714 7 C 0.078 3.922 8 C -0.153 4.153 9 C 0.092 3.908 10 N -0.595 5.595 11 C 0.555 3.445 12 O -0.578 6.578 13 C -0.263 4.263 14 C 0.025 3.975 15 C -0.175 4.175 16 C -0.038 4.038 17 C -0.207 4.207 18 C 0.134 3.866 19 O -0.218 6.218 20 C -0.417 4.417 21 H 0.107 0.893 22 C -0.020 4.020 23 N -0.914 5.914 24 Si 1.021 2.979 25 H -0.250 1.250 26 H -0.267 1.267 27 H -0.268 1.268 28 C -0.247 4.247 29 C -0.035 4.035 30 H 0.108 0.892 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.404 0.596 34 H 0.120 0.880 35 H 0.117 0.883 36 H 0.046 0.954 37 H 0.121 0.879 38 H 0.109 0.891 39 H 0.080 0.920 40 H 0.136 0.864 41 H 0.132 0.868 42 H 0.145 0.855 43 H 0.120 0.880 44 H 0.275 0.725 45 H 0.129 0.871 46 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.875 -22.419 -4.391 32.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.010 3.990 3 H 0.133 0.867 4 C 0.286 3.714 5 O -0.464 6.464 6 N -0.365 5.365 7 C -0.044 4.044 8 C -0.192 4.192 9 C -0.029 4.029 10 N -0.329 5.329 11 C 0.349 3.651 12 O -0.460 6.460 13 C -0.283 4.283 14 C 0.005 3.995 15 C -0.176 4.176 16 C -0.056 4.056 17 C -0.227 4.227 18 C 0.081 3.919 19 O -0.123 6.123 20 C -0.492 4.492 21 H 0.125 0.875 22 C -0.219 4.219 23 N -0.551 5.551 24 Si 0.840 3.160 25 H -0.173 1.173 26 H -0.192 1.192 27 H -0.193 1.193 28 C -0.266 4.266 29 C -0.053 4.053 30 H 0.126 0.874 31 H 0.106 0.894 32 H 0.105 0.895 33 H 0.240 0.760 34 H 0.138 0.862 35 H 0.135 0.865 36 H 0.065 0.935 37 H 0.140 0.860 38 H 0.127 0.873 39 H 0.099 0.901 40 H 0.154 0.846 41 H 0.150 0.850 42 H 0.163 0.837 43 H 0.138 0.862 44 H 0.085 0.915 45 H 0.147 0.853 46 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -22.349 -22.032 -4.396 31.689 hybrid contribution 1.307 0.482 0.458 1.466 sum -21.042 -21.550 -3.938 30.376 Atomic orbital electron populations 1.22534 0.89247 1.05873 1.04931 1.21786 0.98851 0.97001 0.81375 0.86661 1.21528 0.80336 0.82651 0.86842 1.90797 1.34428 1.68200 1.53014 1.46066 1.47082 1.16529 1.26840 1.22598 0.91869 1.00295 0.89621 1.22434 1.01480 0.99056 0.96262 1.21754 0.98955 0.84086 0.98125 1.47695 1.28021 1.29611 1.27546 1.18430 0.80210 0.83226 0.83258 1.90759 1.69550 1.61278 1.24393 1.22860 0.99406 1.01470 1.04607 1.22231 0.91452 0.90358 0.95442 1.18778 0.98417 1.00657 0.99718 1.21192 0.98310 0.92215 0.93869 1.20359 0.95511 1.02737 1.04049 1.20130 0.91338 0.87961 0.92433 1.83892 1.38668 1.42771 1.47004 1.21975 1.04383 1.12098 1.10791 0.87536 1.26664 1.02492 0.94932 0.97763 1.70161 1.41434 1.18942 1.24526 0.84495 0.75066 0.78652 0.77796 1.17288 1.19223 1.19310 1.21213 1.04008 1.01428 0.99948 1.21320 0.92449 0.93499 0.98010 0.87355 0.89441 0.89505 0.76014 0.86178 0.86542 0.93513 0.86045 0.87289 0.90114 0.84634 0.84979 0.83733 0.86201 0.91547 0.85307 0.83280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.09 7.92 71.99 0.57 -0.52 16 2 C 0.12 1.86 2.68 44.42 0.12 1.98 16 3 H 0.12 2.12 5.80 -2.39 -0.01 2.10 16 4 C 0.50 10.21 6.83 87.94 0.60 10.81 16 5 O -0.59 -18.30 17.95 -3.05 -0.05 -18.35 16 6 N -0.71 -8.63 5.29 -462.53 -2.45 -11.07 16 7 C 0.08 0.29 6.32 86.35 0.55 0.84 16 8 C -0.15 -1.09 5.94 30.58 0.18 -0.91 16 9 C 0.09 1.07 5.61 86.44 0.48 1.55 16 10 N -0.60 -10.98 2.58 -806.83 -2.08 -13.06 16 11 C 0.56 15.00 7.58 86.33 0.65 15.65 16 12 O -0.58 -18.81 15.54 -4.43 -0.07 -18.88 16 13 C -0.26 -7.42 8.62 23.61 0.20 -7.22 16 14 C 0.02 0.76 9.45 23.82 0.23 0.98 16 15 C -0.17 -6.09 5.87 -20.13 -0.12 -6.21 16 16 C -0.04 -1.39 9.40 22.55 0.21 -1.18 16 17 C -0.21 -9.09 9.97 22.34 0.22 -8.87 16 18 C 0.13 6.69 6.66 22.72 0.15 6.85 16 19 O -0.22 -13.05 9.74 -20.32 -0.20 -13.25 16 20 C -0.42 -23.95 9.48 67.94 0.64 -23.31 16 21 H 0.11 5.58 5.18 -2.91 -0.02 5.57 16 22 C -0.02 -1.11 5.49 84.86 0.47 -0.65 16 23 N -0.91 -55.43 13.67 21.62 0.30 -55.13 16 24 Si 1.02 42.24 29.55 68.60 2.03 44.26 16 25 H -0.25 -9.52 7.11 99.48 0.71 -8.81 16 26 H -0.27 -10.60 7.11 99.48 0.71 -9.90 16 27 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 28 C -0.25 -10.78 9.14 22.34 0.20 -10.58 16 29 C -0.03 -1.25 9.78 22.55 0.22 -1.03 16 30 H 0.11 0.21 3.56 -2.39 -0.01 0.20 16 31 H 0.09 0.43 7.51 -2.39 -0.02 0.41 16 32 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.40 4.51 8.93 -92.71 -0.83 3.68 16 34 H 0.12 -0.22 8.14 -2.39 -0.02 -0.24 16 35 H 0.12 0.06 3.65 -2.39 -0.01 0.05 16 36 H 0.05 0.64 8.04 -2.39 -0.02 0.62 16 37 H 0.12 0.15 8.14 -2.39 -0.02 0.13 16 38 H 0.11 0.53 6.26 -2.39 -0.01 0.51 16 39 H 0.08 1.33 6.84 -2.39 -0.02 1.32 16 40 H 0.14 3.64 4.10 -2.91 -0.01 3.63 16 41 H 0.13 3.84 7.53 -2.91 -0.02 3.82 16 42 H 0.15 4.47 6.16 -2.91 -0.02 4.46 16 43 H 0.12 5.16 8.06 -2.91 -0.02 5.13 16 44 H 0.28 15.21 8.31 -92.71 -0.77 14.44 16 45 H 0.13 5.59 5.62 -2.91 -0.02 5.58 16 46 H 0.15 4.28 8.06 -2.91 -0.02 4.25 16 Total: -1.00 -83.14 370.43 3.30 -79.85 By element: Atomic # 1 Polarization: 27.21 SS G_CDS: 0.23 Total: 27.45 kcal Atomic # 6 Polarization: -27.39 SS G_CDS: 5.59 Total: -21.80 kcal Atomic # 7 Polarization: -75.03 SS G_CDS: -4.23 Total: -79.27 kcal Atomic # 8 Polarization: -50.16 SS G_CDS: -0.32 Total: -50.49 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.26 kcal Total: -83.14 3.30 -79.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188089174.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.088 kcal (2) G-P(sol) polarization free energy of solvation -83.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds