Wall clock time and date at job start Wed Apr 1 2020 02:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.69779 * 2 1 4 4 C 1.53340 * 109.67290 * 239.48421 * 2 1 3 5 5 C 1.52923 * 108.80852 * 172.81441 * 4 2 1 6 6 N 1.45753 * 110.48255 * 50.67407 * 5 4 2 7 7 C 1.33347 * 124.11121 * 340.89557 * 6 5 4 8 8 O 1.21279 * 118.24644 * 182.22466 * 7 6 5 9 9 C 1.50182 * 123.50558 * 2.25480 * 7 6 5 10 10 H 1.09003 * 109.39344 * 222.36987 * 9 7 6 11 11 N 1.46497 * 109.40017 * 102.54446 * 9 7 6 12 12 C 1.34775 * 120.00549 * 84.99933 * 11 9 7 13 13 O 1.21727 * 119.99360 * 0.02562 * 12 11 9 14 14 C 1.46254 * 120.00507 * 179.97438 * 12 11 9 15 15 C 1.35015 * 120.00084 * 179.97438 * 14 12 11 16 16 C 1.46961 * 119.99930 * 180.02562 * 15 14 12 17 17 C 1.40025 * 120.10071 * 359.72652 * 16 15 14 18 18 C 1.37595 * 119.89724 * 179.74209 * 17 16 15 19 19 C 1.39184 * 120.10195 * 0.51132 * 18 17 16 20 20 O 1.35571 * 119.89891 * 179.74464 * 19 18 17 21 21 C 1.34784 * 116.99832 * 174.46776 * 20 19 18 22 22 H 1.07998 * 119.99916 * 5.05370 * 21 20 19 23 23 C 1.38720 * 119.99675 * 185.05218 * 21 20 19 24 24 N 1.31511 * 119.99939 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99741 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46742 * 90.00248 * 25 23 21 27 27 H 1.48494 * 109.46897 * 209.99998 * 25 23 21 28 28 H 1.48496 * 109.47224 * 330.00264 * 25 23 21 29 29 C 1.39174 * 120.20134 * 359.76259 * 19 18 17 30 30 C 1.37596 * 120.10089 * 359.97438 * 29 19 18 31 31 H 1.08998 * 109.46918 * 180.51693 * 1 2 3 32 32 H 1.09006 * 109.47193 * 300.51655 * 1 2 3 33 33 H 1.08997 * 109.47289 * 60.51705 * 1 2 3 34 34 H 1.09004 * 109.60213 * 52.97981 * 4 2 1 35 35 H 1.09000 * 109.60731 * 292.65333 * 4 2 1 36 36 H 1.09005 * 109.29667 * 170.98330 * 5 4 2 37 37 H 1.09000 * 109.30049 * 290.35576 * 5 4 2 38 38 H 0.97002 * 117.94061 * 160.92503 * 6 5 4 39 39 H 0.97001 * 119.99704 * 264.99503 * 11 9 7 40 40 H 1.07999 * 119.99402 * 0.02562 * 14 12 11 41 41 H 1.07997 * 120.00300 * 359.97438 * 15 14 12 42 42 H 1.07996 * 120.04927 * 359.97438 * 17 16 15 43 43 H 1.07999 * 119.95277 * 180.27479 * 18 17 16 44 44 H 0.97001 * 119.99380 * 180.02562 * 24 23 21 45 45 H 1.07999 * 119.95230 * 179.97438 * 29 19 18 46 46 H 1.08002 * 120.04883 * 179.97438 * 30 29 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0463 -0.7332 -1.2439 5 6 3.5646 -0.5674 -1.3193 6 7 4.1803 -0.9233 -0.0470 7 6 3.5232 -0.9794 1.1120 8 8 4.1501 -1.2480 2.1148 9 6 2.0482 -0.7284 1.2417 10 1 1.8615 -0.1163 2.1241 11 7 1.3472 -2.0074 1.3794 12 6 1.2258 -2.5823 2.5923 13 8 1.6983 -2.0385 3.5735 14 6 0.5255 -3.8589 2.7297 15 6 0.4043 -4.4350 3.9448 16 6 -0.2989 -5.7181 4.0828 17 6 -0.8491 -6.3420 2.9564 18 6 -1.5020 -7.5458 3.0896 19 6 -1.6253 -8.1382 4.3431 20 8 -2.2740 -9.3218 4.4704 21 6 -2.2603 -9.8992 5.6882 22 1 -1.8190 -9.3808 6.5266 23 6 -2.8132 -11.1591 5.8647 24 7 -3.3502 -11.7904 4.8436 25 14 -2.7936 -11.9596 7.5524 26 1 -4.0270 -11.5875 8.2910 27 1 -2.7346 -13.4355 7.3995 28 1 -1.6040 -11.4922 8.3082 29 6 -1.0850 -7.5189 5.4663 30 6 -0.4257 -6.3176 5.3418 31 1 -0.3633 -1.0276 0.0093 32 1 -0.3634 0.5219 0.8854 33 1 -0.3634 0.5058 -0.8945 34 1 1.5872 -0.3074 -2.1362 35 1 1.7970 -1.7920 -1.1742 36 1 3.9590 -1.2135 -2.1036 37 1 3.8025 0.4693 -1.5573 38 1 5.1276 -1.1320 -0.0431 39 1 0.9703 -2.4404 0.5975 40 1 0.1059 -4.3410 1.8591 41 1 0.8250 -3.9535 4.8151 42 1 -0.7579 -5.8809 1.9841 43 1 -1.9229 -8.0300 2.2208 44 1 -3.7371 -12.6713 4.9671 45 1 -1.1834 -7.9818 6.4370 46 1 -0.0071 -5.8375 6.2140 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194246608.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:23:45 Heat of formation + Delta-G solvation = -61.578601 kcal Electronic energy + Delta-G solvation = -28514.242105 eV Core-core repulsion = 24369.629372 eV Total energy + Delta-G solvation = -4144.612734 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.13008 -39.28111 -38.91429 -37.31753 -36.86647 -35.18701 -33.20222 -32.83405 -32.26275 -30.42479 -29.72785 -28.56916 -27.54710 -25.66598 -24.23615 -23.22481 -22.16955 -21.87634 -21.02784 -19.54191 -19.20795 -18.21791 -17.61755 -17.12816 -17.03751 -16.78410 -16.17748 -15.57081 -15.09003 -14.81152 -14.77619 -14.48311 -14.22004 -14.09570 -13.84384 -13.81237 -13.73047 -13.42316 -13.08805 -13.02531 -12.86204 -12.58341 -12.34131 -11.92596 -11.76189 -11.75934 -11.70677 -11.42470 -11.17633 -11.12281 -11.04864 -10.67386 -10.53376 -10.39559 -9.75690 -9.58568 -9.48574 -9.41087 -9.10658 -8.84709 -8.37444 -7.10740 -6.64723 -4.19507 1.08900 2.14326 2.22098 2.57212 2.90863 3.04527 3.05705 3.10322 3.33429 3.61696 3.82881 4.02927 4.11783 4.15261 4.27273 4.52062 4.72258 4.82280 4.91843 4.92911 5.00816 5.04886 5.13402 5.22605 5.24089 5.29233 5.32379 5.47606 5.54241 5.60300 5.66635 5.68719 5.80174 6.01870 6.12720 6.23007 6.44396 6.47179 6.49391 6.61275 6.80066 6.92416 6.98092 7.13831 7.24456 7.28720 7.47531 7.64666 7.80795 7.97189 8.35932 8.80204 9.47138 10.51911 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.025465 B = 0.001726 C = 0.001688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.264748 B =16218.327894 C =16583.135730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.105 4.105 3 H 0.091 0.909 4 C -0.136 4.136 5 C 0.110 3.890 6 N -0.723 5.723 7 C 0.503 3.497 8 O -0.526 6.526 9 C 0.145 3.855 10 H 0.118 0.882 11 N -0.720 5.720 12 C 0.554 3.446 13 O -0.534 6.534 14 C -0.282 4.282 15 C 0.040 3.960 16 C -0.198 4.198 17 C -0.043 4.043 18 C -0.200 4.200 19 C 0.167 3.833 20 O -0.163 6.163 21 C -0.393 4.393 22 H 0.097 0.903 23 C 0.041 3.959 24 N -0.852 5.852 25 Si 0.945 3.055 26 H -0.271 1.271 27 H -0.276 1.276 28 H -0.265 1.265 29 C -0.242 4.242 30 C -0.034 4.034 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.090 0.910 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.067 0.933 38 H 0.398 0.602 39 H 0.401 0.599 40 H 0.123 0.877 41 H 0.123 0.877 42 H 0.118 0.882 43 H 0.121 0.879 44 H 0.274 0.726 45 H 0.131 0.869 46 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.262 21.513 -14.539 27.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.124 4.124 3 H 0.110 0.890 4 C -0.173 4.173 5 C -0.015 4.015 6 N -0.377 5.377 7 C 0.287 3.713 8 O -0.400 6.400 9 C 0.036 3.964 10 H 0.136 0.864 11 N -0.376 5.376 12 C 0.346 3.654 13 O -0.412 6.412 14 C -0.303 4.303 15 C 0.020 3.980 16 C -0.199 4.199 17 C -0.061 4.061 18 C -0.219 4.219 19 C 0.110 3.890 20 O -0.064 6.064 21 C -0.468 4.468 22 H 0.115 0.885 23 C -0.165 4.165 24 N -0.485 5.485 25 Si 0.769 3.231 26 H -0.196 1.196 27 H -0.201 1.201 28 H -0.189 1.189 29 C -0.261 4.261 30 C -0.053 4.053 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.109 0.891 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.085 0.915 38 H 0.233 0.767 39 H 0.237 0.763 40 H 0.141 0.859 41 H 0.141 0.859 42 H 0.135 0.865 43 H 0.139 0.861 44 H 0.084 0.916 45 H 0.149 0.851 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 8.415 21.399 -13.478 26.653 hybrid contribution 0.245 -0.714 0.211 0.784 sum 8.660 20.685 -13.267 26.055 Atomic orbital electron populations 1.21782 0.93197 1.02817 1.02473 1.21606 0.97587 1.00023 0.93147 0.89049 1.21999 0.94514 1.01865 0.98962 1.21374 0.93760 1.00907 0.85411 1.45558 1.13493 1.71034 1.07656 1.20698 0.90793 0.77020 0.82837 1.90832 1.67654 1.46240 1.35241 1.20818 0.87436 0.87393 1.00774 0.86432 1.45737 1.58706 1.22729 1.10416 1.18484 0.79013 0.85503 0.82364 1.90836 1.48253 1.64587 1.37492 1.22358 1.10968 0.97672 0.99299 1.22294 0.87901 0.90882 0.96883 1.18461 1.09918 0.97411 0.94134 1.20868 0.94642 0.93455 0.97137 1.20144 1.08203 0.98021 0.95537 1.19614 0.89217 0.86805 0.93320 1.83902 1.60217 1.28141 1.34093 1.21477 1.40405 1.00391 0.84561 0.88533 1.25397 0.95767 0.95375 0.99951 1.70016 1.33986 1.13992 1.30511 0.85645 0.79289 0.78498 0.79695 1.19637 1.20054 1.18936 1.21102 1.07279 0.98309 0.99435 1.21000 0.94737 0.93796 0.95747 0.91915 0.91918 0.91925 0.89149 0.90788 0.90401 0.91518 0.76663 0.76288 0.85939 0.85870 0.86456 0.86148 0.91614 0.85111 0.86776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 8.93 37.16 0.33 -0.37 16 2 C -0.10 -0.54 2.58 -90.44 -0.23 -0.78 16 3 H 0.09 0.40 8.13 -51.93 -0.42 -0.02 16 4 C -0.14 -0.47 5.27 -26.59 -0.14 -0.61 16 5 C 0.11 0.40 7.17 -4.48 -0.03 0.37 16 6 N -0.72 -5.42 5.45 -61.39 -0.33 -5.76 16 7 C 0.50 5.86 7.25 -11.87 -0.09 5.78 16 8 O -0.53 -9.07 17.40 5.56 0.10 -8.97 16 9 C 0.14 1.40 2.28 -69.33 -0.16 1.24 16 10 H 0.12 1.39 7.57 -51.93 -0.39 0.99 16 11 N -0.72 -7.42 4.17 -56.62 -0.24 -7.65 16 12 C 0.55 8.10 7.69 -13.04 -0.10 8.00 16 13 O -0.53 -10.03 15.51 5.16 0.08 -9.95 16 14 C -0.28 -3.93 9.41 -37.51 -0.35 -4.29 16 15 C 0.04 0.63 9.45 -37.20 -0.35 0.28 16 16 C -0.20 -3.43 5.87 -105.02 -0.62 -4.05 16 17 C -0.04 -0.73 9.40 -39.15 -0.37 -1.10 16 18 C -0.20 -4.00 9.97 -39.46 -0.39 -4.39 16 19 C 0.17 3.85 6.66 -38.88 -0.26 3.59 16 20 O -0.16 -4.42 9.74 0.73 0.01 -4.42 16 21 C -0.39 -10.48 9.48 30.91 0.29 -10.18 16 22 H 0.10 2.37 5.18 -52.49 -0.27 2.10 16 23 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 24 N -0.85 -23.89 13.67 55.48 0.76 -23.13 16 25 Si 0.94 19.63 29.55 -169.99 -5.02 14.61 16 26 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 27 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 28 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 29 C -0.24 -5.06 9.14 -39.47 -0.36 -5.42 16 30 C -0.03 -0.62 9.78 -39.15 -0.38 -1.01 16 31 H 0.06 0.32 6.76 -51.93 -0.35 -0.03 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 34 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 35 H 0.07 0.29 6.97 -51.93 -0.36 -0.07 16 36 H 0.08 0.18 8.14 -51.93 -0.42 -0.25 16 37 H 0.07 0.17 8.14 -51.93 -0.42 -0.26 16 38 H 0.40 2.79 8.80 -40.82 -0.36 2.43 16 39 H 0.40 2.96 6.54 -40.82 -0.27 2.70 16 40 H 0.12 1.42 6.07 -52.49 -0.32 1.10 16 41 H 0.12 1.97 7.52 -52.49 -0.39 1.57 16 42 H 0.12 1.61 6.16 -52.49 -0.32 1.29 16 43 H 0.12 2.28 8.06 -52.49 -0.42 1.86 16 44 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 45 H 0.13 2.71 5.62 -52.49 -0.29 2.41 16 46 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 LS Contribution 383.10 15.07 5.77 5.77 Total: -1.00 -35.30 383.10 -8.04 -43.34 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -5.85 Total: 8.09 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: -3.31 Total: -11.94 kcal Atomic # 7 Polarization: -36.73 SS G_CDS: 0.19 Total: -36.54 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: 0.18 Total: -23.33 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.02 Total: 14.61 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.30 -8.04 -43.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194246608.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.240 kcal (2) G-P(sol) polarization free energy of solvation -35.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds