Wall clock time and date at job start Wed Apr 1 2020 02:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.69948 * 2 1 4 4 C 1.53357 * 109.67328 * 120.53332 * 2 1 3 5 5 C 1.52921 * 108.66398 * 187.27716 * 4 2 1 6 6 N 1.45754 * 110.48936 * 309.24304 * 5 4 2 7 7 C 1.33352 * 124.10273 * 19.04431 * 6 5 4 8 8 O 1.21293 * 118.24120 * 177.80519 * 7 6 5 9 9 C 1.50175 * 123.51284 * 357.82687 * 7 6 5 10 10 H 1.08997 * 109.39778 * 257.51492 * 9 7 6 11 11 N 1.46500 * 109.39971 * 137.68713 * 9 7 6 12 12 C 1.34776 * 119.99784 * 85.00157 * 11 9 7 13 13 O 1.21722 * 120.00525 * 359.97438 * 12 11 9 14 14 C 1.46261 * 119.99815 * 180.27468 * 12 11 9 15 15 C 1.35019 * 120.00171 * 179.72881 * 14 12 11 16 16 C 1.46959 * 120.00209 * 180.02562 * 15 14 12 17 17 C 1.40027 * 120.10020 * 359.71654 * 16 15 14 18 18 C 1.37595 * 119.89500 * 179.72161 * 17 16 15 19 19 C 1.39172 * 120.10275 * 0.53902 * 18 17 16 20 20 O 1.35569 * 119.89948 * 179.74102 * 19 18 17 21 21 C 1.34784 * 117.00383 * 174.46485 * 20 19 18 22 22 H 1.08001 * 119.99703 * 5.05527 * 21 20 19 23 23 C 1.38713 * 120.00069 * 185.05807 * 21 20 19 24 24 N 1.31507 * 120.00375 * 359.97438 * 23 21 20 25 25 Si 1.86810 * 119.99659 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.46758 * 90.00008 * 25 23 21 27 27 H 1.48499 * 109.46917 * 209.99899 * 25 23 21 28 28 H 1.48493 * 109.47232 * 329.99850 * 25 23 21 29 29 C 1.39180 * 120.20332 * 359.75681 * 19 18 17 30 30 C 1.37594 * 120.09857 * 359.96564 * 29 19 18 31 31 H 1.09000 * 109.47602 * 180.51551 * 1 2 3 32 32 H 1.09000 * 109.47154 * 300.51528 * 1 2 3 33 33 H 1.08995 * 109.47462 * 60.51494 * 1 2 3 34 34 H 1.09004 * 109.61778 * 67.52301 * 4 2 1 35 35 H 1.08994 * 109.73799 * 307.10636 * 4 2 1 36 36 H 1.08996 * 109.30265 * 188.92649 * 5 4 2 37 37 H 1.09003 * 109.29985 * 69.54762 * 5 4 2 38 38 H 0.96998 * 117.94934 * 199.07856 * 6 5 4 39 39 H 0.96999 * 120.00112 * 265.00130 * 11 9 7 40 40 H 1.08000 * 119.99981 * 359.72341 * 14 12 11 41 41 H 1.08000 * 119.99847 * 359.97438 * 15 14 12 42 42 H 1.08004 * 120.04953 * 359.97438 * 17 16 15 43 43 H 1.08005 * 119.94922 * 180.27654 * 18 17 16 44 44 H 0.96996 * 119.99921 * 179.97438 * 24 23 21 45 45 H 1.08001 * 119.94449 * 179.97438 * 29 19 18 46 46 H 1.08007 * 120.04682 * 180.02562 * 30 29 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0463 -0.7336 1.2438 5 6 3.5642 -0.5639 1.3172 6 7 4.1795 -0.9193 0.0446 7 6 3.5209 -0.9792 -1.1134 8 8 4.1474 -1.2475 -2.1167 9 6 2.0452 -0.7318 -1.2417 10 1 1.5256 -1.6849 -1.3405 11 7 1.7905 0.0867 -2.4298 12 6 1.6673 -0.4986 -3.6375 13 8 1.7681 -1.7072 -3.7414 14 6 1.4190 0.3191 -4.8245 15 6 1.3011 -0.2666 -6.0353 16 6 1.0522 0.5550 -7.2280 17 6 0.9311 1.9451 -7.1104 18 6 0.7038 2.7109 -8.2307 19 6 0.5830 2.1050 -9.4777 20 8 0.3538 2.8630 -10.5781 21 6 0.3611 2.2314 -11.7687 22 1 0.4624 1.1569 -11.8093 23 6 0.2384 2.9613 -12.9418 24 7 0.1145 4.2696 -12.8924 25 14 0.2477 2.0857 -14.5920 26 1 -1.1421 1.7206 -14.9664 27 1 0.8190 2.9851 -15.6263 28 1 1.0737 0.8555 -14.4949 29 6 0.6965 0.7231 -9.5986 30 6 0.9294 -0.0502 -8.4846 31 1 -0.3634 -1.0276 0.0092 32 1 -0.3633 0.5218 0.8853 33 1 -0.3634 0.5058 -0.8945 34 1 1.7998 -1.7931 1.1725 35 1 1.5874 -0.3109 2.1375 36 1 3.9613 -1.2080 2.1017 37 1 3.7997 0.4738 1.5538 38 1 5.1273 -1.1256 0.0397 39 1 1.7106 1.0498 -2.3471 40 1 1.3300 1.3915 -4.7325 41 1 1.3904 -1.3390 -6.1273 42 1 1.0201 2.4157 -6.1423 43 1 0.6147 3.7836 -8.1416 44 1 0.0291 4.7800 -13.7128 45 1 0.6016 0.2572 -10.5683 46 1 1.0178 -1.1225 -8.5795 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194246622.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:23:48 Heat of formation + Delta-G solvation = -90.131528 kcal Electronic energy + Delta-G solvation = -28345.254346 eV Core-core repulsion = 24199.403465 eV Total energy + Delta-G solvation = -4145.850881 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.86157 -40.86238 -40.10543 -38.50059 -37.94652 -36.08116 -34.74245 -34.05288 -33.67613 -31.97703 -30.41500 -29.62013 -28.39525 -27.46706 -25.14401 -24.03252 -23.61777 -22.75297 -21.93982 -20.94526 -20.31403 -19.63649 -18.85670 -18.35442 -18.22995 -17.59364 -17.31872 -16.48906 -16.40700 -16.03604 -15.80024 -15.62898 -15.50832 -15.39686 -15.19369 -14.97114 -14.67508 -14.60277 -14.15372 -14.10761 -13.72530 -13.60673 -13.32720 -13.23587 -13.17071 -12.71149 -12.67521 -12.58856 -12.32802 -12.21894 -12.13426 -11.84524 -11.73233 -11.29367 -11.22232 -11.11615 -10.95746 -10.57825 -10.05614 -10.04621 -9.90066 -8.69102 -8.52506 -6.18615 -0.25386 0.57765 1.12438 1.35454 1.43153 1.46296 1.52613 2.10725 2.15068 2.37214 2.51153 2.86191 3.17127 3.41635 3.44980 3.58749 3.76631 3.79143 3.92291 3.95329 4.07797 4.21359 4.30791 4.36777 4.47058 4.49027 4.53862 4.63269 4.66287 4.86218 4.93583 4.97695 5.01607 5.02522 5.10026 5.18418 5.24779 5.27046 5.32179 5.37614 5.44817 5.57728 5.62957 5.80104 5.83291 5.96962 6.09372 6.28302 6.54147 6.91836 7.17349 7.30205 7.68601 8.69505 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.030241 B = 0.001647 C = 0.001620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.673343 B =16996.149782 C =17275.542154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.091 4.091 3 H 0.101 0.899 4 C -0.128 4.128 5 C 0.101 3.899 6 N -0.711 5.711 7 C 0.494 3.506 8 O -0.593 6.593 9 C 0.142 3.858 10 H 0.098 0.902 11 N -0.701 5.701 12 C 0.554 3.446 13 O -0.583 6.583 14 C -0.243 4.243 15 C 0.014 3.986 16 C -0.170 4.170 17 C -0.037 4.037 18 C -0.205 4.205 19 C 0.130 3.870 20 O -0.219 6.219 21 C -0.418 4.418 22 H 0.105 0.895 23 C -0.018 4.018 24 N -0.913 5.913 25 Si 1.018 2.982 26 H -0.262 1.262 27 H -0.270 1.270 28 H -0.254 1.254 29 C -0.249 4.249 30 C -0.042 4.042 31 H 0.052 0.948 32 H 0.085 0.915 33 H 0.054 0.946 34 H 0.070 0.930 35 H 0.124 0.876 36 H 0.102 0.898 37 H 0.088 0.912 38 H 0.401 0.599 39 H 0.419 0.581 40 H 0.155 0.845 41 H 0.120 0.880 42 H 0.161 0.839 43 H 0.125 0.875 44 H 0.275 0.725 45 H 0.125 0.875 46 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.455 -6.992 33.188 34.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.110 4.110 3 H 0.119 0.881 4 C -0.166 4.166 5 C -0.022 4.022 6 N -0.363 5.363 7 C 0.279 3.721 8 O -0.473 6.473 9 C 0.033 3.967 10 H 0.116 0.884 11 N -0.354 5.354 12 C 0.346 3.654 13 O -0.465 6.465 14 C -0.264 4.264 15 C -0.006 4.006 16 C -0.171 4.171 17 C -0.055 4.055 18 C -0.225 4.225 19 C 0.078 3.922 20 O -0.124 6.124 21 C -0.493 4.493 22 H 0.122 0.878 23 C -0.217 4.217 24 N -0.550 5.550 25 Si 0.837 3.163 26 H -0.187 1.187 27 H -0.195 1.195 28 H -0.178 1.178 29 C -0.268 4.268 30 C -0.060 4.060 31 H 0.071 0.929 32 H 0.104 0.896 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.142 0.858 36 H 0.121 0.879 37 H 0.106 0.894 38 H 0.236 0.764 39 H 0.257 0.743 40 H 0.172 0.828 41 H 0.138 0.862 42 H 0.178 0.822 43 H 0.143 0.857 44 H 0.084 0.916 45 H 0.143 0.857 46 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 2.523 -7.479 32.468 33.414 hybrid contribution 0.481 0.016 -1.281 1.369 sum 3.004 -7.463 31.187 32.207 Atomic orbital electron populations 1.21824 0.92775 1.02466 1.03222 1.21569 0.97716 1.00460 0.91248 0.88069 1.22017 0.94210 1.01761 0.98632 1.21769 0.93903 1.02774 0.83712 1.45625 1.13543 1.69131 1.08005 1.21112 0.91569 0.76283 0.83151 1.90800 1.69053 1.49820 1.37642 1.20902 0.90444 0.97952 0.87421 0.88415 1.45440 1.73088 1.11264 1.05588 1.18563 0.75017 0.87354 0.84496 1.90773 1.52261 1.16789 1.86674 1.22743 1.11133 1.01074 0.91450 1.22156 0.88566 0.98963 0.90924 1.18760 1.11925 0.93505 0.92895 1.21279 0.94001 0.92274 0.97899 1.20423 1.11279 1.00565 0.90194 1.20179 0.92203 0.91238 0.88566 1.83883 1.77879 1.37095 1.13502 1.21895 1.52903 0.93609 0.80925 0.87790 1.26601 0.95508 0.96439 1.03120 1.70144 1.47147 1.07268 1.30402 0.84588 0.79473 0.77895 0.74309 1.18680 1.19494 1.17760 1.21194 1.12085 0.93135 1.00357 1.21303 0.93809 0.99937 0.90915 0.92923 0.89642 0.92727 0.91103 0.85809 0.87946 0.89427 0.76376 0.74347 0.82751 0.86200 0.82174 0.85702 0.91574 0.85728 0.84035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.12 71.98 0.66 -0.24 16 2 C -0.09 -0.61 2.30 -10.65 -0.02 -0.63 16 3 H 0.10 0.41 8.10 -2.39 -0.02 0.39 16 4 C -0.13 -0.30 5.32 30.69 0.16 -0.14 16 5 C 0.10 0.28 7.17 86.49 0.62 0.90 16 6 N -0.71 -8.82 5.45 -467.31 -2.55 -11.37 16 7 C 0.49 10.86 7.44 87.71 0.65 11.51 16 8 O -0.59 -20.47 16.58 -2.18 -0.04 -20.50 16 9 C 0.14 2.47 2.07 44.10 0.09 2.56 16 10 H 0.10 2.13 7.52 -2.39 -0.02 2.12 16 11 N -0.70 -13.67 4.69 -451.17 -2.12 -15.79 16 12 C 0.55 15.75 7.17 86.33 0.62 16.37 16 13 O -0.58 -21.88 15.46 -3.53 -0.05 -21.93 16 14 C -0.24 -6.28 9.41 23.62 0.22 -6.06 16 15 C 0.01 0.41 9.45 23.82 0.23 0.64 16 16 C -0.17 -5.65 5.87 -20.13 -0.12 -5.76 16 17 C -0.04 -1.20 9.40 22.55 0.21 -0.99 16 18 C -0.21 -8.37 9.97 22.34 0.22 -8.14 16 19 C 0.13 6.34 6.66 22.72 0.15 6.49 16 20 O -0.22 -12.82 9.74 -20.29 -0.20 -13.02 16 21 C -0.42 -23.83 9.48 67.93 0.64 -23.19 16 22 H 0.10 5.45 5.18 -2.91 -0.02 5.44 16 23 C -0.02 -0.99 5.49 84.85 0.47 -0.53 16 24 N -0.91 -54.74 13.67 21.62 0.30 -54.44 16 25 Si 1.02 42.11 29.55 68.60 2.03 44.13 16 26 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 27 H -0.27 -10.75 7.11 99.48 0.71 -10.05 16 28 H -0.25 -9.84 7.11 99.48 0.71 -9.13 16 29 C -0.25 -10.78 9.14 22.34 0.20 -10.57 16 30 C -0.04 -1.50 9.78 22.55 0.22 -1.28 16 31 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.08 0.19 8.14 -2.39 -0.02 0.17 16 33 H 0.05 0.46 7.97 -2.39 -0.02 0.44 16 34 H 0.07 0.31 8.12 -2.39 -0.02 0.29 16 35 H 0.12 -0.38 8.14 -2.39 -0.02 -0.40 16 36 H 0.10 -0.11 8.14 -2.39 -0.02 -0.13 16 37 H 0.09 -0.02 8.14 -2.39 -0.02 -0.04 16 38 H 0.40 4.77 8.80 -92.71 -0.82 3.96 16 39 H 0.42 5.22 8.57 -92.71 -0.79 4.43 16 40 H 0.16 2.96 6.07 -2.91 -0.02 2.94 16 41 H 0.12 3.74 7.52 -2.91 -0.02 3.71 16 42 H 0.16 3.78 6.16 -2.91 -0.02 3.77 16 43 H 0.12 4.88 8.06 -2.91 -0.02 4.86 16 44 H 0.28 15.08 8.31 -92.71 -0.77 14.31 16 45 H 0.13 5.45 5.62 -2.91 -0.02 5.43 16 46 H 0.14 4.25 8.06 -2.91 -0.02 4.22 16 Total: -1.00 -86.48 386.48 2.03 -84.45 By element: Atomic # 1 Polarization: 28.11 SS G_CDS: -0.57 Total: 27.54 kcal Atomic # 6 Polarization: -24.30 SS G_CDS: 5.23 Total: -19.07 kcal Atomic # 7 Polarization: -77.23 SS G_CDS: -4.37 Total: -81.60 kcal Atomic # 8 Polarization: -55.16 SS G_CDS: -0.29 Total: -55.45 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.13 kcal Total: -86.48 2.03 -84.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194246622.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.683 kcal (2) G-P(sol) polarization free energy of solvation -86.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds